AT2G37400

chloroplast lumen common family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011182
Physical Location & Seq
Reverse (-)
15695988 .. 15697457
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37400.1

Sequence Viewer

Length: 1002 bp
ATGGAGTCTCTAGGGAAGCTACAGCTTCATCAGCAACCAAATCACCTCTCTTTCACTCATTTCTCTTCATCTTTCCCCAAAAAGCCTTCGTCTTTCTCTCTCAGATCCTTACCCAGATCAACATCATCCTTCAAATGCATTTCAATCAAAGCTTCCTCATCCAAGTCTCAAGACTCGAAGCTCTCAATCCTCAAATCCACATGCGTCAGCTTCACTGCGGCAGCAGCACTGTTCCTTGTGAATCTCCAGCTCAAACCTTCACCGGCGATTGCGGCTCCTGTGGCGGCGACGCCGTTAATGGAATCTCTCAAACAAAGTAACGGAAACGTTTCATTTGAAGAAGAAGAGAGATCACTCGAAGAGTATCTTGCTTCTCACCCTGATGATGTTGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTCGAAAGCTTCTAGAAGCTATAGAATTGATTGATAGGTTGATTGAATTGGAACCAGAGGAGAAGGAATGGCCAATGTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCTGCTAAAACTGGTTTTGAAGAGATTCTAGTCAAAGATCCGCTTCGTGTCGAGGCTTATCACGGTTTAGTTATGGCTTATTCTGATTCTGGTGATGATTTGAATGCTGTGGAGAAGAGAATTGAGGAGGCAATGGTTAGGTGCAAGAAGGAGAAGAATCGTAAGGACTTGAGAGATTTTAAGCTACTAGTGGCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAGTTGTATGAGGAGCTTGTGAAGGAAGAGCCGAGAGATTTCAGGCCGTATCTATGTCAAGGGATTATATACACAGTGTTGAAGAAGGAGAATGAGGCGGAGAAACAGTTTGAGAAGTTTAGGAGACTTGTCCCGAAGAATCATCCTTATAGAGAGTATTTTATGGATAATATGGTTGCTTCGAAGCTCTTTGCCGAGAAGGTACAGCGAGAGATGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

333

Amino Acids

38.16

Weight (kDa)

6.7

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 218, 272, 284, 584, 875
AclI AACGTT 1 cut(s) 327
AclWI GGATC 3 cut(s) 99, 428, 575
AcoI YGGCCR 1 cut(s) 497
AcsI RAATTY 1 cut(s) 741
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 1 cut(s) 981
AhlI ACTAGT 1 cut(s) 730
Alw26I GTCTC 3 cut(s) 12, 171, 895
AlwI GGATC 3 cut(s) 99, 428, 575
AoxI GGCC 2 cut(s) 497, 821
ApeKI GCWGC 2 cut(s) 221, 224
ApoI RAATTY 1 cut(s) 741
Asp700I GAANNNNTTC 2 cut(s) 328, 567
AspLEI GCGC 1 cut(s) 739
AsuHPI GGTGA 4 cut(s) 35, 252, 368, 647
AsuII TTCGAA 1 cut(s) 959
BalI TGGCCA 1 cut(s) 499
BbvI GCAGC 2 cut(s) 233, 236
BccI CCATC 1 cut(s) 985
BceAI ACGGC 2 cut(s) 277, 808
BcoDI GTCTC 3 cut(s) 12, 171, 895
BcuI ACTAGT 1 cut(s) 730
BfaI CTAG 4 cut(s) 11, 440, 572, 731
BfmI CTRYAG 2 cut(s) 20, 447
BisI GCNGC 5 cut(s) 219, 222, 225, 273, 285
BlsI GCNGC 5 cut(s) 220, 223, 226, 274, 286
BmiI GGNNCC 2 cut(s) 276, 480
BpmI CTGGAG 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 959
BpuEI CTTGAG 2 cut(s) 153, 733
BsaBI GATNNNNATC 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 869, 899
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 121
BseGI GGATG 3 cut(s) 125, 158, 919
BseJI GATNNNNATC 1 cut(s) 121
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 3 cut(s) 500, 683, 803
BseXI GCAGC 2 cut(s) 233, 236
BshFI GGCC 2 cut(s) 499, 823
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 893
BsmAI GTCTC 3 cut(s) 12, 171, 895
BsmFI GGGAC 1 cut(s) 893
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 2 cut(s) 499, 823
Bsp119I TTCGAA 1 cut(s) 959
Bsp143I GATC 6 cut(s) 104, 116, 350, 401, 420, 580
BspACI CCGC 5 cut(s) 218, 272, 284, 584, 875
BspANI GGCC 2 cut(s) 499, 823
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 276, 480
BspPI GGATC 3 cut(s) 99, 428, 575
BspQI GCTCTTC 1 cut(s) 798
BspT104I TTCGAA 1 cut(s) 959
BsrDI GCAATG 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 262
BssMI GATC 6 cut(s) 104, 116, 350, 401, 420, 580
BssNI GRCGYC 1 cut(s) 290
Bst4CI ACNGT 5 cut(s) 231, 530, 608, 853, 885
Bst6I CTCTTC 6 cut(s) 70, 339, 354, 558, 653, 798
BstACI GRCGYC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 959
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 125, 158, 919
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 6 cut(s) 107, 119, 353, 404, 423, 583
BstMAI GTCTC 3 cut(s) 12, 171, 895
BstMBI GATC 6 cut(s) 104, 116, 350, 401, 420, 580
BstMWI GCNNNNNNNGC 4 cut(s) 31, 224, 272, 281
BstNSI RCATGY 1 cut(s) 204
BstSFI CTRYAG 2 cut(s) 20, 447
BstV1I GCAGC 2 cut(s) 233, 236
BstX2I RGATCY 2 cut(s) 104, 580
BstYI RGATCY 2 cut(s) 104, 580
BsuRI GGCC 2 cut(s) 499, 823
BtsCI GGATG 3 cut(s) 125, 158, 919
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 4 cut(s) 213, 227, 535, 858
CfoI GCGC 1 cut(s) 739
Cfr10I RCCGGY 1 cut(s) 262
CseI GACGC 2 cut(s) 193, 298
Csp6I GTAC 1 cut(s) 980
CviAII CATG 1 cut(s) 201
CviQI GTAC 1 cut(s) 980
DdeI CTNAG 1 cut(s) 101
DpnI GATC 6 cut(s) 106, 118, 352, 403, 422, 582
DpnII GATC 6 cut(s) 104, 116, 350, 401, 420, 580
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 6 cut(s) 70, 339, 354, 558, 653, 798
EarI CTCTTC 6 cut(s) 70, 339, 354, 558, 653, 798
EciI GGCGGA 1 cut(s) 890
EcoT22I ATGCAT 1 cut(s) 140
FaeI CATG 1 cut(s) 204
FalI AAGNNNNNCTT 4 cut(s) 351, 383, 570, 602
FaqI GGGAC 1 cut(s) 893
FatI CATG 1 cut(s) 200
Fnu4HI GCNGC 5 cut(s) 219, 222, 225, 273, 285
FokI GGATG 3 cut(s) 112, 145, 906
Fsp4HI GCNGC 5 cut(s) 219, 222, 225, 273, 285
FspBI CTAG 4 cut(s) 11, 440, 572, 731
GlaI GCGC 1 cut(s) 738
GluI GCNGC 5 cut(s) 219, 222, 225, 273, 285
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 2 cut(s) 499, 823
HapII CCGG 1 cut(s) 263
HgaI GACGC 2 cut(s) 193, 298
HhaI GCGC 1 cut(s) 739
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 1 cut(s) 204
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HindIII AAGCTT 2 cut(s) 150, 434
HinfI GANTC 9 cut(s) 5, 173, 241, 302, 542, 568, 629, 700, 916
HpaII CCGG 1 cut(s) 263
HphI GGTGA 4 cut(s) 35, 252, 368, 647
Hpy188I TCNGA 2 cut(s) 104, 628
Hpy188III TCNNGA 4 cut(s) 170, 429, 440, 910
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 9 cut(s) 96, 139, 267, 484, 685, 749, 793, 856, 970
HpyCH4III ACNGT 5 cut(s) 231, 530, 608, 853, 885
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 2 cut(s) 138, 687
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 224, 272, 281
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 1 cut(s) 204
HspAI GCGC 1 cut(s) 737
Kzo9I GATC 6 cut(s) 104, 116, 350, 401, 420, 580
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 2 cut(s) 280, 790
LpnPI CCDG 9 cut(s) 127, 260, 276, 291, 393, 495, 540, 618, 805
Lsp1109I GCAGC 2 cut(s) 233, 236
MaeI CTAG 4 cut(s) 11, 440, 572, 731
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 2 cut(s) 317, 524
MalI GATC 6 cut(s) 106, 118, 352, 403, 422, 582
MboI GATC 6 cut(s) 104, 116, 350, 401, 420, 580
MflI RGATCY 2 cut(s) 104, 580
MlsI TGGCCA 1 cut(s) 499
MluCI AATT 4 cut(s) 452, 473, 663, 741
MluNI TGGCCA 1 cut(s) 499
MlyI GAGTC 3 cut(s) 14, 167, 551
Mox20I TGGCCA 1 cut(s) 499
Mph1103I ATGCAT 1 cut(s) 140
MroXI GAANNNNTTC 2 cut(s) 328, 567
MscI TGGCCA 1 cut(s) 499
MseI TTAA 3 cut(s) 296, 407, 723
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 499
MspI CCGG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 652
MwoI GCNNNNNNNGC 4 cut(s) 31, 224, 272, 281
NdeII GATC 6 cut(s) 104, 116, 350, 401, 420, 580
NlaIII CATG 1 cut(s) 204
NlaIV GGNNCC 2 cut(s) 276, 480
NmeAIII GCCGAG 2 cut(s) 834, 997
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 1 cut(s) 204
NspV TTCGAA 1 cut(s) 959
PciSI GCTCTTC 1 cut(s) 798
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 2 cut(s) 328, 567
PfeI GAWTC 6 cut(s) 241, 302, 568, 629, 700, 916
PkrI GCNGC 5 cut(s) 220, 223, 226, 274, 286
PleI GAGTC 3 cut(s) 13, 167, 550
PpsI GAGTC 3 cut(s) 13, 167, 550
Psp1406I AACGTT 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 276, 480
PsuI RGATCY 2 cut(s) 104, 580
RsaI GTAC 1 cut(s) 981
RsaNI GTAC 1 cut(s) 980
RseI CAYNNNNRTG 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 3 cut(s) 296, 407, 723
SatI GCNGC 5 cut(s) 219, 222, 225, 273, 285
Sau3AI GATC 6 cut(s) 104, 116, 350, 401, 420, 580
SchI GAGTC 3 cut(s) 14, 167, 551
SfcI CTRYAG 2 cut(s) 20, 447
SfuI TTCGAA 1 cut(s) 959
SgrAI CRCCGGYG 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 2 cut(s) 168, 712
SmoI CTYRAG 2 cut(s) 168, 712
SpeI ACTAGT 1 cut(s) 730
Sse9I AATT 4 cut(s) 452, 473, 663, 741
SsiI CCGC 5 cut(s) 218, 272, 284, 584, 875
SspMI CTAG 4 cut(s) 11, 440, 572, 731
TaaI ACNGT 5 cut(s) 231, 530, 608, 853, 885
TaiI ACGT 1 cut(s) 330
TaqI TCGA 5 cut(s) 176, 357, 430, 594, 959
TasI AATT 4 cut(s) 452, 473, 663, 741
TauI GCSGC 3 cut(s) 221, 275, 287
TfiI GAWTC 6 cut(s) 241, 302, 568, 629, 700, 916
Tru1I TTAA 3 cut(s) 296, 407, 723
Tru9I TTAA 3 cut(s) 296, 407, 723
TscAI CASTG 4 cut(s) 220, 234, 535, 858
TseI GCWGC 2 cut(s) 221, 224
TspDTI ATGAA 4 cut(s) 17, 57, 321, 783
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 4 cut(s) 220, 234, 535, 858
XapI RAATTY 1 cut(s) 741
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 1 cut(s) 204
XmnI GAANNNNTTC 2 cut(s) 328, 567
XspI CTAG 4 cut(s) 11, 440, 572, 731
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.