AT3G53560

chloroplast lumen common family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011182
Physical Location & Seq
Reverse (-)
19859585 .. 19861178
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53560.1

Sequence Viewer

Length: 1023 bp
ATGGAGTCTCTGGGGAAGCTACAGCTACATCACCAGCCATTTCACCTTTCCTTCACTCACACCTCTTCTTCAACATTCCCCAAAAACCTCTTCAAATCCTCAATTCAACCAATTTCATCTCTCAAATCCGCTTCAATTAAAGCTTCGTCCTCCAAATTTCAAAACTCTATCACCCCTCTCCCAAAGTCCACACCTTTCCGTCTCTTCAAATCCACATGCATCACTCTAACAACCGCCGCGGCTCTGCTTTTGGCGAATCTCCATCTCAAATCGCCGGCGATTGCAGCTCCCATCGCGCCTCCGCCGTCAGTTGAAAGCAAAGAAAACGTTACCTTGGAAGAAGAAGAGAGAGCGCTTGATGAGCATTTGATTACTCACCCTTCTGATGTCGACGCTCTTCGTTCATTGATGGAGGTAAAGATCAAATCTCGAAAGCTTACAGAAGCAGTAGAAGTGATCGATCGTTTGATAAAATTGGAACCTGAAGAAAAAGAATGGCCAGTTTTGAAAGCTAACATCTTTACCTACAGTGGAGATCTAGACTTGGCTAAAACTGGATTTGAAGAGATTCTGGCTAAAGATCCGCTTCGTGTTGAAGCTTATCACGGCTTGCTTATGGCTTATTCAGATGCAGGTCTTGATTTGAAAGAGGTGGAGAGTAGAATTGAGGAAGCAATGTTGAAGTGCAAAAAGGAGAATAATCAAAACGATTTTCGGGATTTTAAGCTACTCGTGGCGCAGATTCGGGTCATTGAAGGAAAACATAGTGAAGCATTGAAGCTTTATCAAGAGCTTGTAAAGGAGGAACCAAGAGATTTTAGGCCGTATCTTTGTCAGGGAATTATATACACATTGCTGAAGAAGAAAGACAAGGCAGAAGAACAGTTTGATAACTTTCGGAAACTTGTTCCAAAGAATCATCCTTATAGAGAGTATTTTATGGATAATATGATAGCAACAAAGCTTTTTTCCGAGAAGGCGCAGCGTGAGATGGCTGAGGAGATGGCTGGATCAACTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19

Protein Analysis

340

Amino Acids

38.66

Weight (kDa)

6.58

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 623
AccI GTMKAC 1 cut(s) 390
AccII CGCG 2 cut(s) 239, 296
AciI CCGC 6 cut(s) 129, 234, 237, 239, 302, 584
AclI AACGTT 1 cut(s) 327
AclWI GGATC 2 cut(s) 575, 1018
AcoI YGGCCR 1 cut(s) 497
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 2 cut(s) 504, 878
AfeI AGCGCT 1 cut(s) 354
AhlI ACTAGT 1 cut(s) 1016
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
Alw26I GTCTC 2 cut(s) 12, 206
AlwI GGATC 2 cut(s) 575, 1018
Aor51HI AGCGCT 1 cut(s) 354
AoxI GGCC 2 cut(s) 497, 821
ApeKI GCWGC 2 cut(s) 284, 982
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 4 cut(s) 298, 355, 739, 982
AsuHPI GGTGA 4 cut(s) 23, 35, 163, 368
BalI TGGCCA 1 cut(s) 499
BauI CACGAG 1 cut(s) 731
BbvCI CCTCAGC 1 cut(s) 996
BbvI GCAGC 2 cut(s) 296, 994
BccI CCATC 5 cut(s) 270, 299, 403, 985, 997
BceAI ACGGC 3 cut(s) 289, 622, 808
BcoDI GTCTC 2 cut(s) 12, 206
BcuI ACTAGT 1 cut(s) 1016
BfaI CTAG 2 cut(s) 539, 1017
BfmI CTRYAG 2 cut(s) 20, 526
BfoI RGCGCY 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 623
BglII AGATCT 1 cut(s) 535
BisI GCNGC 4 cut(s) 237, 240, 285, 983
BlsI GCNGC 4 cut(s) 238, 241, 286, 984
BmiI GGNNCC 2 cut(s) 480, 807
BmsI GCATC 2 cut(s) 228, 619
Bpu10I CCTNAGC 1 cut(s) 996
Bsa29I ATCGAT 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 237, 333
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 500, 559
Bse3DI GCAATG 2 cut(s) 681, 851
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 2 cut(s) 237, 333
BseGI GGATG 1 cut(s) 919
BseMI GCAATG 2 cut(s) 681, 851
BseMII CTCAG 1 cut(s) 987
BseNI ACTGG 2 cut(s) 500, 559
BseRI GAGGAG 1 cut(s) 1013
BseXI GCAGC 2 cut(s) 296, 994
Bsh1236I CGCG 2 cut(s) 239, 296
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 2 cut(s) 499, 823
BshVI ATCGAT 1 cut(s) 459
BsiEI CGRYCG 1 cut(s) 463
BsiSI CCGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 12, 206
BsmBI CGTCTC 1 cut(s) 206
BsnI GGCC 2 cut(s) 499, 823
Bsp143I GATC 6 cut(s) 420, 456, 460, 535, 580, 1010
BspACI CCGC 6 cut(s) 129, 234, 237, 239, 302, 584
BspANI GGCC 2 cut(s) 499, 823
BspCNI CTCAG 1 cut(s) 988
BspDI ATCGAT 1 cut(s) 459
BspFNI CGCG 2 cut(s) 239, 296
BspLI GGNNCC 2 cut(s) 480, 807
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 2 cut(s) 575, 1018
BspQI GCTCTTC 1 cut(s) 402
BsrDI GCAATG 2 cut(s) 681, 851
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 2 cut(s) 500, 559
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 237, 333
BssMI GATC 6 cut(s) 420, 456, 460, 535, 580, 1010
BssSI CACGAG 1 cut(s) 731
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 731
Bst4CI ACNGT 2 cut(s) 530, 885
Bst6I CTCTTC 6 cut(s) 70, 95, 209, 339, 402, 558
BstC8I GCNNGC 2 cut(s) 276, 611
BstDEI CTNAG 1 cut(s) 996
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 919
BstFNI CGCG 2 cut(s) 239, 296
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 4 cut(s) 298, 355, 739, 982
BstKTI GATC 6 cut(s) 423, 459, 463, 538, 583, 1013
BstMAI GTCTC 2 cut(s) 12, 206
BstMBI GATC 6 cut(s) 420, 456, 460, 535, 580, 1010
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 3 cut(s) 284, 293, 361
BstNSI RCATGY 1 cut(s) 219
BstSFI CTRYAG 2 cut(s) 20, 526
BstUI CGCG 2 cut(s) 239, 296
BstV1I GCAGC 2 cut(s) 296, 994
BstX2I RGATCY 2 cut(s) 535, 580
BstYI RGATCY 2 cut(s) 535, 580
Bsu15I ATCGAT 1 cut(s) 459
BsuRI GGCC 2 cut(s) 499, 823
BsuTUI ATCGAT 1 cut(s) 459
BtgI CCRYGG 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 277
BtsCI GGATG 1 cut(s) 919
BtsIMutI CAGTG 1 cut(s) 535
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 2 cut(s) 276, 611
CfoI GCGC 4 cut(s) 298, 355, 739, 982
Cfr10I RCCGGY 1 cut(s) 274
Cfr42I CCGCGG 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 459
CseI GACGC 1 cut(s) 401
CviAII CATG 1 cut(s) 216
DdeI CTNAG 1 cut(s) 996
DpnI GATC 6 cut(s) 422, 458, 462, 537, 582, 1012
DpnII GATC 6 cut(s) 420, 456, 460, 535, 580, 1010
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 6 cut(s) 70, 95, 209, 339, 402, 558
EarI CTCTTC 6 cut(s) 70, 95, 209, 339, 402, 558
EciI GGCGGA 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 333
Eco47III AGCGCT 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 504, 878
EcoT14I CCWWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 1 cut(s) 219
FaiI YATR 8 cut(s) 217, 617, 765, 845, 847, 927, 941, 950
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FatI CATG 1 cut(s) 215
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 4 cut(s) 237, 240, 285, 983
FokI GGATG 1 cut(s) 906
Fsp4HI GCNGC 4 cut(s) 237, 240, 285, 983
FspBI CTAG 2 cut(s) 539, 1017
GlaI GCGC 4 cut(s) 297, 354, 738, 981
GluI GCNGC 4 cut(s) 237, 240, 285, 983
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 2 cut(s) 499, 823
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 401
HhaI GCGC 4 cut(s) 298, 355, 739, 982
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 4 cut(s) 296, 353, 737, 980
HinP1I GCGC 4 cut(s) 296, 353, 737, 980
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 5 cut(s) 141, 434, 597, 779, 962
HinfI GANTC 5 cut(s) 5, 256, 568, 742, 916
HpaII CCGG 1 cut(s) 275
HphI GGTGA 4 cut(s) 23, 35, 163, 368
Hpy166II GTNNAC 2 cut(s) 189, 391
Hpy188I TCNGA 4 cut(s) 385, 628, 900, 973
Hpy188III TCNNGA 5 cut(s) 429, 539, 638, 716, 788
Hpy8I GTNNAC 2 cut(s) 189, 391
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 4 cut(s) 61, 390, 749, 970
HpyCH4III ACNGT 2 cut(s) 530, 885
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 219, 284, 632, 687
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 293, 361
HpyF3I CTNAG 1 cut(s) 996
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 4 cut(s) 296, 353, 737, 980
KroI GCCGGC 1 cut(s) 274
KroNI GCCGGC 1 cut(s) 276
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 6 cut(s) 420, 456, 460, 535, 580, 1010
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 9 cut(s) 47, 288, 495, 513, 540, 557, 618, 821, 993
Lsp1109I GCAGC 2 cut(s) 296, 994
LweI GCATC 2 cut(s) 228, 619
MaeI CTAG 2 cut(s) 539, 1017
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 328
MalI GATC 6 cut(s) 422, 458, 462, 537, 582, 1012
MboI GATC 6 cut(s) 420, 456, 460, 535, 580, 1010
MflI RGATCY 2 cut(s) 535, 580
MlsI TGGCCA 1 cut(s) 499
MluCI AATT 7 cut(s) 102, 111, 135, 155, 473, 663, 840
MluNI TGGCCA 1 cut(s) 499
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 499
Mph1103I ATGCAT 1 cut(s) 221
MreI CGCCGGCG 1 cut(s) 274
MroNI GCCGGC 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 499
MseI TTAA 2 cut(s) 138, 723
Msp20I TGGCCA 1 cut(s) 499
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 275
MvnI CGCG 2 cut(s) 239, 296
MwoI GCNNNNNNNGC 3 cut(s) 284, 293, 361
NaeI GCCGGC 1 cut(s) 276
NdeII GATC 6 cut(s) 420, 456, 460, 535, 580, 1010
NgoMIV GCCGGC 1 cut(s) 274
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 2 cut(s) 480, 807
NsiI ATGCAT 1 cut(s) 221
NspI RCATGY 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 402
PdiI GCCGGC 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 4 cut(s) 256, 568, 742, 916
PkrI GCNGC 4 cut(s) 238, 241, 286, 984
Ple19I CGATCG 1 cut(s) 463
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 480, 807
PsuI RGATCY 2 cut(s) 535, 580
PvuI CGATCG 1 cut(s) 463
SacII CCGCGG 1 cut(s) 240
SalI GTCGAC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 138, 723
SatI GCNGC 4 cut(s) 237, 240, 285, 983
Sau3AI GATC 6 cut(s) 420, 456, 460, 535, 580, 1010
SchI GAGTC 1 cut(s) 14
SfaNI GCATC 2 cut(s) 228, 619
SfcI CTRYAG 2 cut(s) 20, 526
Sfr303I CCGCGG 1 cut(s) 240
SgrAI CRCCGGYG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 240
SpeI ACTAGT 1 cut(s) 1016
Sse9I AATT 7 cut(s) 102, 111, 135, 155, 473, 663, 840
SsiI CCGC 6 cut(s) 129, 234, 237, 239, 302, 584
SspMI CTAG 2 cut(s) 539, 1017
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 530, 885
TaiI ACGT 1 cut(s) 330
TaqI TCGA 3 cut(s) 390, 430, 459
TasI AATT 7 cut(s) 102, 111, 135, 155, 473, 663, 840
TauI GCSGC 2 cut(s) 239, 242
TfiI GAWTC 4 cut(s) 256, 568, 742, 916
Tru1I TTAA 2 cut(s) 138, 723
Tru9I TTAA 2 cut(s) 138, 723
TscAI CASTG 1 cut(s) 535
TseI GCWGC 2 cut(s) 284, 982
TspDTI ATGAA 2 cut(s) 105, 393
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 535
XapI RAATTY 1 cut(s) 155
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 539, 1017
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.