pycom12g13030

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011182
Physical Location & Seq
Reverse (-)
15518322 .. 15519398
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13030.1

Sequence Viewer

Length: 1077 bp
ATGGAGTCTCTCGCCAAACTTCACCTCCGCCACCAACCCCTCACCCTCTCGCTCAATCCACACTGTTCCTCGTTCCCAAAACCCCTTTCTTCCTTCAGACCTCCGCGCCAATCGCCGGCCTTCAACTTCACCACCCTCACTATCAGAGCCTCATCCTCATCGCTTCCGCCGTCCTCCGCCCACCCACCTCACCAAAACCCCCCAAACCCTAAACCCATTTCCTCTTTCAAAACCCTAGCCCCTCTCGCCGCCCCTATCATCAAGACGACCTGCGCCGCCATCGCTGCCGCCGTATTCTTCTTCATGAGGTTCAATCACCGAACCGCTATGGCCGCCACCGCAGTCGCACCTTCCATGGTGGAGCCAGTGGAACAAGAATCTCCCGCTGACAGCGTTTCGTATGAAGAGAAAGAGAGGGTACTTGAAGAGCAATTGTCACAGAACCCGGACGATGTCGAAGCTCTGAGGAATTTAATGGAGGTCAGGATCAAATCCAACAAGCTGGCCGAAGCGATTCAGGTGCTCGAGCGCTTGATCGAGCTGGAACCCGAAGACTTTGAGTGGCAATTGCTGAAGGCCAATGTTCATAGCTACATGGGTGAGGTAGATCTCGCAAACGCCGATTTCGAGGACATTTTGTCGAAAGACCCTTTCAAAGTTGAGGCCTTTCATGGCCTTGTAATGTCCGCTTCGCAATCACCGGAGAAATTGAATAGTGTGATGAAGAGGGTGGAGGAGGCAATGGTGAAGTGTAAAAAGGATGGGAATATGTCGGATGTGAGGGATTTTAAGCTGTTAGTTGCGCAAATTCGCGTGATGGAGTCGAAGTATTCGGATGCTTTGAAGCTTTATCAAGAGCTTGTGAGGGAAGAACCGAGAGACTTCAGGCCTTATCTGTGTCAAGGAATAATTTATACAATGTTGAGGAAGACTAATGAGGCTGAGAAACAGTTTGAAAAGTTCAGGAAGCTTGTTCCAAAGAACCACCCTTATAAAGAGTATTTCGATGACAATATGTTTGCGACAAAGCTTTTTGGGCAGAAGATGGAGAGGGAAACAGCAGCGTCGAACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

359

Amino Acids

40.72

Weight (kDa)

6.53

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 139 - 194 3e-09 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 993
Acc16I TGCGCA 1 cut(s) 804
Acc36I ACCTGC 1 cut(s) 278
AccII CGCG 2 cut(s) 106, 813
AclWI GGATC 1 cut(s) 494
AcoI YGGCCR 2 cut(s) 330, 504
AcsI RAATTY 2 cut(s) 469, 807
AcuI CTGAAG 3 cut(s) 79, 593, 868
AfaI GTAC 1 cut(s) 420
AfeI AGCGCT 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 8 cut(s) 124, 229, 313, 425, 655, 712, 844, 956
AhdI GACNNNNNGTC 1 cut(s) 637
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 9 cut(s) 461, 502, 541, 591, 793, 847, 859, 970, 1030
AluI AGCT 9 cut(s) 461, 502, 541, 591, 793, 847, 859, 970, 1030
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 12, 873
AlwI GGATC 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 524
Aor51HI AGCGCT 1 cut(s) 530
AoxI GGCC 7 cut(s) 117, 330, 504, 576, 663, 673, 887
ApeKI GCWGC 2 cut(s) 284, 1061
ApoI RAATTY 2 cut(s) 469, 807
ArsI GACNNNNNNTTYG 2 cut(s) 1001, 1033
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 4 cut(s) 108, 275, 531, 805
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 8 cut(s) 14, 34, 121, 182, 308, 611, 690, 757
AvaI CYCGRG 1 cut(s) 524
BbsI GAAGAC 2 cut(s) 558, 935
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 271, 1073
BccI CCATC 4 cut(s) 287, 755, 811, 1039
BceAI ACGGC 2 cut(s) 154, 275
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 12, 873
BfaI CTAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 607
BisI GCNGC 6 cut(s) 249, 276, 285, 288, 333, 1062
BlsI GCNGC 6 cut(s) 250, 277, 286, 289, 334, 1063
Bme1390I CCNGG 1 cut(s) 446
BmeRI GACNNNNNGTC 1 cut(s) 637
BmeT110I CYCGRG 1 cut(s) 524
BmiI GGNNCC 2 cut(s) 363, 546
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 1 cut(s) 826
BpiI GAAGAC 2 cut(s) 558, 935
BpuMI CCSGG 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 700
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 812, 842
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 747
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 4 cut(s) 152, 766, 781, 841
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 2 cut(s) 455, 933
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 2 cut(s) 271, 1073
Bsh1236I CGCG 2 cut(s) 106, 813
BshFI GGCC 7 cut(s) 119, 332, 506, 578, 665, 675, 889
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 3 cut(s) 116, 446, 701
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 2 cut(s) 12, 873
BsnI GGCC 7 cut(s) 119, 332, 506, 578, 665, 675, 889
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 3 cut(s) 486, 534, 607
Bsp19I CCATGG 1 cut(s) 354
BspANI GGCC 7 cut(s) 119, 332, 506, 578, 665, 675, 889
BspCNI CTCAG 2 cut(s) 456, 934
BspFNI CGCG 2 cut(s) 106, 813
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 363, 546
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 494
BspQI GCTCTTC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 747
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 1 cut(s) 365
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 3 cut(s) 486, 534, 607
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 65, 951
Bst6I CTCTTC 3 cut(s) 399, 420, 719
BstC8I GCNNGC 2 cut(s) 117, 504
BstDEI CTNAG 2 cut(s) 464, 942
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 4 cut(s) 152, 766, 781, 841
BstFNI CGCG 2 cut(s) 106, 813
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 4 cut(s) 108, 275, 531, 805
BstKTI GATC 3 cut(s) 489, 537, 610
BstMAI GTCTC 2 cut(s) 12, 873
BstMBI GATC 3 cut(s) 486, 534, 607
BstMWI GCNNNNNNNGC 7 cut(s) 112, 245, 281, 284, 332, 338, 1036
BstSCI CCNGG 1 cut(s) 444
BstUI CGCG 2 cut(s) 106, 813
BstV1I GCAGC 2 cut(s) 271, 1073
BstV2I GAAGAC 2 cut(s) 558, 935
BstX2I RGATCY 1 cut(s) 607
BstXI CCANNNNNNTGG 1 cut(s) 502
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 7 cut(s) 119, 332, 506, 578, 665, 675, 889
BtgI CCRYGG 1 cut(s) 354
BtgZI GCGATG 2 cut(s) 144, 265
BtsCI GGATG 4 cut(s) 152, 766, 781, 841
BtsIMutI CAGTG 2 cut(s) 61, 372
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 117, 504
CciI TCATGA 1 cut(s) 303
CfoI GCGC 4 cut(s) 108, 275, 531, 805
Cfr10I RCCGGY 1 cut(s) 115
CseI GACGC 1 cut(s) 1053
Csp6I GTAC 1 cut(s) 419
CviAII CATG 4 cut(s) 304, 355, 595, 671
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 2 cut(s) 464, 942
DpnI GATC 3 cut(s) 488, 536, 609
DpnII GATC 3 cut(s) 486, 534, 607
DriI GACNNNNNGTC 1 cut(s) 637
EaeI YGGCCR 2 cut(s) 330, 504
Eam1104I CTCTTC 3 cut(s) 399, 420, 719
Eam1105I GACNNNNNGTC 1 cut(s) 637
EarI CTCTTC 3 cut(s) 399, 420, 719
EciI GGCGGA 3 cut(s) 17, 156, 166
Eco130I CCWWGG 1 cut(s) 354
Eco147I AGGCCT 2 cut(s) 665, 889
Eco47III AGCGCT 1 cut(s) 530
Eco57I CTGAAG 3 cut(s) 79, 593, 868
Eco88I CYCGRG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 4 cut(s) 307, 358, 598, 674
FatI CATG 4 cut(s) 303, 354, 594, 670
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 6 cut(s) 249, 276, 285, 288, 333, 1062
FokI GGATG 4 cut(s) 139, 773, 788, 848
Fsp4HI GCNGC 6 cut(s) 249, 276, 285, 288, 333, 1062
FspBI CTAG 1 cut(s) 236
FspI TGCGCA 1 cut(s) 804
GlaI GCGC 4 cut(s) 107, 274, 530, 804
GluI GCNGC 6 cut(s) 249, 276, 285, 288, 333, 1062
HaeII RGCGCY 1 cut(s) 532
HaeIII GGCC 7 cut(s) 119, 332, 506, 578, 665, 675, 889
HapII CCGG 3 cut(s) 116, 446, 701
HgaI GACGC 1 cut(s) 1053
HhaI GCGC 4 cut(s) 108, 275, 531, 805
Hin1II CATG 4 cut(s) 307, 358, 598, 674
Hin6I GCGC 4 cut(s) 106, 273, 529, 803
HinP1I GCGC 4 cut(s) 106, 273, 529, 803
HindIII AAGCTT 3 cut(s) 845, 968, 1028
HinfI GANTC 4 cut(s) 5, 377, 514, 821
HpaII CCGG 3 cut(s) 116, 446, 701
HphI GGTGA 8 cut(s) 14, 34, 121, 182, 308, 611, 690, 757
Hpy188I TCNGA 6 cut(s) 98, 146, 465, 775, 835, 1076
Hpy188III TCNNGA 5 cut(s) 262, 304, 484, 854, 964
Hpy99I CGWCG 1 cut(s) 1069
HpyAV CCTTC 4 cut(s) 103, 130, 360, 568
HpyCH4III ACNGT 2 cut(s) 65, 951
HpyCH4IV ACGT 1 cut(s) 1071
HpyF10VI GCNNNNNNNGC 7 cut(s) 112, 245, 281, 284, 332, 338, 1036
HpyF3I CTNAG 2 cut(s) 464, 942
HpySE526I ACGT 1 cut(s) 1071
Hsp92II CATG 4 cut(s) 307, 358, 598, 674
HspAI GCGC 4 cut(s) 106, 273, 529, 803
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
Kzo9I GATC 3 cut(s) 486, 534, 607
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 2 cut(s) 271, 1073
LweI GCATC 1 cut(s) 826
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 1071
MaeIII GTNAC 1 cut(s) 435
MalI GATC 3 cut(s) 488, 536, 609
MboI GATC 3 cut(s) 486, 534, 607
MfeI CAATTG 2 cut(s) 431, 566
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 6 cut(s) 431, 469, 566, 707, 807, 909
MlyI GAGTC 2 cut(s) 14, 830
MmeI TCCRAC 2 cut(s) 519, 753
MroNI GCCGGC 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 2 cut(s) 473, 789
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 116, 446, 701
MspR9I CCNGG 1 cut(s) 446
MunI CAATTG 2 cut(s) 431, 566
MvnI CGCG 2 cut(s) 106, 813
MwoI GCNNNNNNNGC 7 cut(s) 112, 245, 281, 284, 332, 338, 1036
NaeI GCCGGC 1 cut(s) 117
NciI CCSGG 1 cut(s) 446
NcoI CCATGG 1 cut(s) 354
NdeII GATC 3 cut(s) 486, 534, 607
NgoMIV GCCGGC 1 cut(s) 115
NlaIII CATG 4 cut(s) 307, 358, 598, 674
NlaIV GGNNCC 2 cut(s) 363, 546
NmuCI GTSAC 1 cut(s) 435
NsbI TGCGCA 1 cut(s) 804
PaeR7I CTCGAG 1 cut(s) 524
PagI TCATGA 1 cut(s) 303
PceI AGGCCT 2 cut(s) 665, 889
PciSI GCTCTTC 1 cut(s) 420
PcsI WCGNNNNNNNCGW 4 cut(s) 167, 288, 618, 624
PdiI GCCGGC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 377, 514
PflFI GACNNNGTC 1 cut(s) 452
PkrI GCNGC 6 cut(s) 250, 277, 286, 289, 334, 1063
PleI GAGTC 2 cut(s) 13, 829
PpsI GAGTC 2 cut(s) 13, 829
PsiI TTATAA 1 cut(s) 993
PspN4I GGNNCC 2 cut(s) 363, 546
PspXI VCTCGAGB 1 cut(s) 524
PsuI RGATCY 1 cut(s) 607
PsyI GACNNNGTC 1 cut(s) 452
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 2 cut(s) 473, 789
SatI GCNGC 6 cut(s) 249, 276, 285, 288, 333, 1062
Sau3AI GATC 3 cut(s) 486, 534, 607
SchI GAGTC 2 cut(s) 14, 830
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 1 cut(s) 525
SfaNI GCATC 1 cut(s) 826
Sfr274I CTCGAG 1 cut(s) 524
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 6 cut(s) 431, 469, 566, 707, 807, 909
SseBI AGGCCT 2 cut(s) 665, 889
SspMI CTAG 1 cut(s) 236
StuI AGGCCT 2 cut(s) 665, 889
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 65, 951
TaiI ACGT 1 cut(s) 1074
TaqI TCGA 8 cut(s) 456, 525, 537, 627, 641, 824, 1005, 1067
TasI AATT 6 cut(s) 431, 469, 566, 707, 807, 909
TauI GCSGC 4 cut(s) 251, 278, 290, 335
TfiI GAWTC 2 cut(s) 377, 514
Tru1I TTAA 2 cut(s) 473, 789
Tru9I TTAA 2 cut(s) 473, 789
TscAI CASTG 2 cut(s) 68, 372
TseFI GTSAC 1 cut(s) 435
TseI GCWGC 2 cut(s) 284, 1061
Tsp45I GTSAC 1 cut(s) 435
TspDTI ATGAA 5 cut(s) 292, 417, 575, 659, 737
TspRI CASTG 2 cut(s) 68, 372
Tth111I GACNNNGTC 1 cut(s) 452
XapI RAATTY 2 cut(s) 469, 807
XhoI CTCGAG 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.