MD12G1136200.v1.1

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0011182
Physical Location & Seq
Reverse (-)
21273714 .. 21275983
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1136200.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGGAGTCTCTCGCCAAACTTCACCTCCGCCACCAACCCCTCACCCTCTCGCTCAATCCCCACTGTTCCTCGTTCCCAAAACCCCTTTCTTCCTTCAGACCTCTGTGCCAATCGCCGACCTTCAACTTCACCACCCTCACTATCAGAGCCTCATCCTCATCGCTTCCGCCACCGTCCTCCGCCCACCCACCTCACCAAAACCCCCCAAACCCTAAACCCACTTCCTCTTTCAAAACCCTGGCCCCTCTCGCCGCCCCTATCATCAAGGCGACCTGCGCCGCCATTGCTGCCGCCGCATTCTTCTTCATGAGGTTCAATCACCGAACCGCTATGGCCGCCACCGCAGTCGCACCTTCCACGGTGGAGCCAGTGGAACAAGAATCTCCCGCTGACAGCGTTTCGTATGAAGAGAAAGAAAGGGTACTTGAAGAGCAATTGTCACAGAACCCAGACGATGTCGAAGCTCTGAGGAATTTAATGGAGGTCAGGATCAAATCCAACAAGCTGGCCGAAGCGATTCAGGTGCTGGAGCGCTTGATCGAGCTGGAACCCGAAGACTTTGAGTGGCAATTGCTGAAGGCCAATGTTCATAGCTACATGGGTGAGGTAGATCTCGCTAACTCCGAGTTTGAGGACATTTTGTCGAAAAACCCTTTCAAAGTTGAGGCCTTTCATGGCCTTGTAATGTCCGCTTCGCAATCACCTGAGAAATTGAAGAGTGTGATGAAGAGGGTGGAGGAGGCAATGGTGAAGTGTAAGAAGGATGGGAATATGTCGGATGTGAGGGATTTTAAGCTGTTAGTTGCGCAAATTCGCGTGATGGAGTCGAAGTATTCGGATGCTTTGAAGCTTTATCAAGAGCTTGTGAGGGAAGAACCAAGAGACTTCAGGCCTTATCTGTGTCAAGGAATAATTTATACAATGTTGAGGAAGACTAATGAGGCTGAGAAACAGTTTGAAAAGTTCAGGAAGCTTGTTCCAAAGAACCACCCTTATAAAGAGTATTTCGATGACAATATGTTTGCGACAAAGCTTTTTGGGCAGAAGATGGAGAGGGAAACAGCAGCGTCGAACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

360

Amino Acids

40.75

Weight (kDa)

6.78

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 140 - 195 3e-09 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
Acc16I TGCGCA 1 cut(s) 807
Acc36I ACCTGC 1 cut(s) 281
AccII CGCG 1 cut(s) 816
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 2 cut(s) 333, 507
AcsI RAATTY 2 cut(s) 472, 810
AcuI CTGAAG 3 cut(s) 79, 596, 871
AfaI GTAC 1 cut(s) 423
AfeI AGCGCT 1 cut(s) 533
AgsI TTSAA 8 cut(s) 124, 232, 316, 428, 658, 715, 847, 959
AhdI GACNNNNNGTC 1 cut(s) 640
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 9 cut(s) 464, 505, 544, 594, 796, 850, 862, 973, 1033
AluI AGCT 9 cut(s) 464, 505, 544, 594, 796, 850, 862, 973, 1033
Alw26I GTCTC 2 cut(s) 12, 876
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 526
Aor51HI AGCGCT 1 cut(s) 533
AoxI GGCC 7 cut(s) 240, 333, 507, 579, 666, 676, 890
ApeKI GCWGC 2 cut(s) 287, 1064
ApoI RAATTY 2 cut(s) 472, 810
ArsI GACNNNNNNTTYG 2 cut(s) 1004, 1036
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 3 cut(s) 278, 534, 808
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 8 cut(s) 14, 34, 121, 185, 311, 614, 693, 760
BbsI GAAGAC 2 cut(s) 561, 938
BbvI GCAGC 2 cut(s) 274, 1076
BccI CCATC 3 cut(s) 758, 814, 1042
BcgI CGANNNNNNTGC 2 cut(s) 505, 539
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 12, 876
BfoI RGCGCY 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 281
BglII AGATCT 1 cut(s) 610
BisI GCNGC 7 cut(s) 252, 279, 288, 291, 294, 336, 1065
BlsI GCNGC 7 cut(s) 253, 280, 289, 292, 295, 337, 1066
Bme1390I CCNGG 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 640
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 3 cut(s) 243, 366, 549
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 829
BpiI GAAGAC 2 cut(s) 561, 938
BpmI CTGGAG 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 237, 357
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 815, 845
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 2 cut(s) 282, 750
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 237, 357
BseGI GGATG 4 cut(s) 152, 769, 784, 844
BseMI GCAATG 2 cut(s) 282, 750
BseMII CTCAG 3 cut(s) 458, 696, 936
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 2 cut(s) 274, 1076
Bsh1236I CGCG 1 cut(s) 816
BshFI GGCC 7 cut(s) 242, 335, 509, 581, 668, 678, 892
BsmAI GTCTC 2 cut(s) 12, 876
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 7 cut(s) 242, 335, 509, 581, 668, 678, 892
Bsp143I GATC 3 cut(s) 489, 537, 610
BspANI GGCC 7 cut(s) 242, 335, 509, 581, 668, 678, 892
BspCNI CTCAG 3 cut(s) 459, 697, 937
BspFNI CGCG 1 cut(s) 816
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 3 cut(s) 243, 366, 549
BspMI ACCTGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 497
BspQI GCTCTTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 282, 750
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 2 cut(s) 237, 357
BssMI GATC 3 cut(s) 489, 537, 610
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 4 cut(s) 65, 174, 361, 954
Bst6I CTCTTC 4 cut(s) 402, 423, 710, 722
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 3 cut(s) 467, 705, 945
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 4 cut(s) 152, 769, 784, 844
BstFNI CGCG 1 cut(s) 816
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 3 cut(s) 278, 534, 808
BstKTI GATC 3 cut(s) 492, 540, 613
BstMAI GTCTC 2 cut(s) 12, 876
BstMBI GATC 3 cut(s) 489, 537, 610
BstMWI GCNNNNNNNGC 8 cut(s) 248, 275, 284, 287, 293, 335, 341, 1039
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 274, 1076
BstV2I GAAGAC 2 cut(s) 561, 938
BstX2I RGATCY 1 cut(s) 610
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 7 cut(s) 242, 335, 509, 581, 668, 678, 892
BtgI CCRYGG 1 cut(s) 357
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 4 cut(s) 152, 769, 784, 844
BtsIMutI CAGTG 2 cut(s) 61, 375
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 526
CciI TCATGA 1 cut(s) 306
CfoI GCGC 3 cut(s) 278, 534, 808
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 1 cut(s) 1056
Csp6I GTAC 1 cut(s) 422
CviAII CATG 3 cut(s) 307, 598, 674
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 3 cut(s) 467, 705, 945
DpnI GATC 3 cut(s) 491, 539, 612
DpnII GATC 3 cut(s) 489, 537, 610
DriI GACNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 333, 507
Eam1104I CTCTTC 4 cut(s) 402, 423, 710, 722
Eam1105I GACNNNNNGTC 1 cut(s) 640
EarI CTCTTC 4 cut(s) 402, 423, 710, 722
EciI GGCGGA 3 cut(s) 17, 156, 169
Eco147I AGGCCT 2 cut(s) 668, 892
Eco47III AGCGCT 1 cut(s) 533
Eco57I CTGAAG 3 cut(s) 79, 596, 871
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 3 cut(s) 310, 601, 677
FatI CATG 3 cut(s) 306, 597, 673
FauI CCCGC 1 cut(s) 394
Fnu4HI GCNGC 7 cut(s) 252, 279, 288, 291, 294, 336, 1065
FokI GGATG 4 cut(s) 139, 776, 791, 851
Fsp4HI GCNGC 7 cut(s) 252, 279, 288, 291, 294, 336, 1065
FspI TGCGCA 1 cut(s) 807
GlaI GCGC 3 cut(s) 277, 533, 807
GluI GCNGC 7 cut(s) 252, 279, 288, 291, 294, 336, 1065
GsuI CTGGAG 1 cut(s) 548
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 7 cut(s) 242, 335, 509, 581, 668, 678, 892
HgaI GACGC 1 cut(s) 1056
HhaI GCGC 3 cut(s) 278, 534, 808
Hin1II CATG 3 cut(s) 310, 601, 677
Hin6I GCGC 3 cut(s) 276, 532, 806
HinP1I GCGC 3 cut(s) 276, 532, 806
HindIII AAGCTT 3 cut(s) 848, 971, 1031
HinfI GANTC 4 cut(s) 5, 380, 517, 824
HphI GGTGA 8 cut(s) 14, 34, 121, 185, 311, 614, 693, 760
Hpy188I TCNGA 7 cut(s) 98, 146, 468, 625, 778, 838, 1079
Hpy188III TCNNGA 4 cut(s) 307, 487, 857, 967
Hpy99I CGWCG 1 cut(s) 1072
HpyAV CCTTC 5 cut(s) 103, 130, 363, 571, 754
HpyCH4III ACNGT 4 cut(s) 65, 174, 361, 954
HpyCH4IV ACGT 1 cut(s) 1074
HpyF10VI GCNNNNNNNGC 8 cut(s) 248, 275, 284, 287, 293, 335, 341, 1039
HpyF3I CTNAG 3 cut(s) 467, 705, 945
HpySE526I ACGT 1 cut(s) 1074
Hsp92II CATG 3 cut(s) 310, 601, 677
HspAI GCGC 3 cut(s) 276, 532, 806
Kzo9I GATC 3 cut(s) 489, 537, 610
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 2 cut(s) 364, 529
Lsp1109I GCAGC 2 cut(s) 274, 1076
LweI GCATC 1 cut(s) 829
MaeII ACGT 1 cut(s) 1074
MaeIII GTNAC 1 cut(s) 438
MalI GATC 3 cut(s) 491, 539, 612
MboI GATC 3 cut(s) 489, 537, 610
MfeI CAATTG 2 cut(s) 434, 569
MflI RGATCY 1 cut(s) 610
MluCI AATT 6 cut(s) 434, 472, 569, 710, 810, 912
MlyI GAGTC 2 cut(s) 14, 833
MmeI TCCRAC 2 cut(s) 522, 756
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 2 cut(s) 476, 792
MspA1I CMGCKG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 239
MunI CAATTG 2 cut(s) 434, 569
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 8 cut(s) 248, 275, 284, 287, 293, 335, 341, 1039
NdeII GATC 3 cut(s) 489, 537, 610
NlaIII CATG 3 cut(s) 310, 601, 677
NlaIV GGNNCC 3 cut(s) 243, 366, 549
NmuCI GTSAC 1 cut(s) 438
NsbI TGCGCA 1 cut(s) 807
PagI TCATGA 1 cut(s) 306
PceI AGGCCT 2 cut(s) 668, 892
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PctI GAATGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 380, 517
PflFI GACNNNGTC 1 cut(s) 455
PkrI GCNGC 7 cut(s) 253, 280, 289, 292, 295, 337, 1066
PleI GAGTC 2 cut(s) 13, 832
PpsI GAGTC 2 cut(s) 13, 832
PsiI TTATAA 1 cut(s) 996
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 243, 366, 549
PspPI GGNCC 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 526
PsuI RGATCY 1 cut(s) 610
PsyI GACNNNGTC 1 cut(s) 455
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 476, 792
SatI GCNGC 7 cut(s) 252, 279, 288, 291, 294, 336, 1065
Sau3AI GATC 3 cut(s) 489, 537, 610
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 2 cut(s) 14, 833
ScrFI CCNGG 1 cut(s) 239
SfaNI GCATC 1 cut(s) 829
Sse9I AATT 6 cut(s) 434, 472, 569, 710, 810, 912
SseBI AGGCCT 2 cut(s) 668, 892
StuI AGGCCT 2 cut(s) 668, 892
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 4 cut(s) 65, 174, 361, 954
TaiI ACGT 1 cut(s) 1077
TaqI TCGA 6 cut(s) 459, 540, 644, 827, 1008, 1070
TasI AATT 6 cut(s) 434, 472, 569, 710, 810, 912
TauI GCSGC 5 cut(s) 254, 281, 293, 296, 338
TfiI GAWTC 2 cut(s) 380, 517
Tru1I TTAA 2 cut(s) 476, 792
Tru9I TTAA 2 cut(s) 476, 792
TscAI CASTG 2 cut(s) 68, 375
TseFI GTSAC 1 cut(s) 438
TseI GCWGC 2 cut(s) 287, 1064
Tsp45I GTSAC 1 cut(s) 438
TspDTI ATGAA 5 cut(s) 295, 420, 578, 662, 740
TspRI CASTG 2 cut(s) 68, 375
Tth111I GACNNNGTC 1 cut(s) 455
XapI RAATTY 2 cut(s) 472, 810
XmnI GAANNNNTTC 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.