Rh3BG158900

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011182
Physical Location & Seq
Forward (+)
13612450 .. 13614926
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG158900.1

Sequence Viewer

Length: 1035 bp
ATGGAGTCCCTCGCTAAACTCAACCACCGTCACCAACCTCTCCACCTCTCCATCAATCCCCACCGTCCATCTTTCCCTAACCCCATTTCTTCCTTCCGGCCGCCGCGCTCCTCCTCACCCCTCAACTTCTCCCCCCTCAAAATCCGAGCCACCTCCTCCTCCTCCGCCGACCCACCTCGTCGAACCCCCCAAAACCCTAAACCCTCGTTCCTCCAAACCCTATCCCCTCTCGCCTGCGCTGCCATAGCCACCGCCGCATTCTTCACCATGCGATTCCACCCCACCAAGCCAGCCGTCGCCGCCCCAATCGCGCCGGCCACGGTGGAGCCCAGGGAAGAAACCGCCGGGAAATTGCCGTATGAGGACGCGGAGAGACAAATTGAGGAGCGATTGAGCCGTGACCCGAACGATGTCGAAGCGCTTCGGTCTCTGATGGAGGTGAAAATCAAAGCCCACAAGCTGACGGAAGCGGTTCAGGTGCTGGACCGGTTGATCGAGATCGAGCCGGAAGACTATGAGTGGCAATTGCTGAAGGCCAATGTTCATACTTATTTGGGTGAGAATGACCTAGCTGCTAGTGAATTCGAGGACATTTTGGCCAAGGACCCTCTTCGGGTTGAGGCCTATCATGGGCTGGTGATGTCTGCGTCGCAGTCCGAAGAGAAATTGAAGCTCGTGTTGAAGAGGGTTGAGAAGGCAATGGAGGGGTGCAAGAAGCAGGGGAACACTTCGGATGTGAGGGACTTTAAGCTGTTGATTGCTCAAATTCGAGTAATGGAGGCCGAATACAAGGATGCATTGGAGCTCTATCAAGAGCTTGTGAGGGAGGAGCCGAGGGATTTCAGGCCGTATCTGTGTCAGGGCATCATATACACTCTGTTGAGGAAGAAGAATGAAGCTGAGAAACAATTCGCAACATTCAGGAAGCTTGTTCCCAAGAATCATCCTTACAAGGAGTACTTCGATGATAACATGTTTGCGACCAAGCTTTTTGGGGCAAAGGTGGACAGGGAGACAGCGGGGTCGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

344

Amino Acids

39.2

Weight (kDa)

7.72

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 120 - 180 2.6e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1021
AccII CGCG 3 cut(s) 106, 311, 368
AcoI YGGCCR 3 cut(s) 98, 315, 597
AcsI RAATTY 2 cut(s) 581, 765
AcuI CTGAAG 1 cut(s) 551
AfaI GTAC 1 cut(s) 959
AfeI AGCGCT 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 613, 630
AflIII ACRYGT 2 cut(s) 972, 1029
AgeI ACCGGT 1 cut(s) 486
AgsI TTSAA 2 cut(s) 670, 682
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 9 cut(s) 460, 572, 673, 751, 805, 817, 899, 928, 988
AluI AGCT 9 cut(s) 460, 572, 673, 751, 805, 817, 899, 928, 988
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 3 cut(s) 367, 432, 1007
AlwNI CAGNNNCTG 1 cut(s) 481
Aor51HI AGCGCT 1 cut(s) 420
AoxI GGCC 7 cut(s) 98, 315, 534, 597, 621, 780, 845
ApeKI GCWGC 2 cut(s) 239, 572
ApoI RAATTY 2 cut(s) 581, 765
AsiGI ACCGGT 1 cut(s) 486
Asp700I GAANNNNTTC 3 cut(s) 420, 471, 908
AspLEI GCGC 4 cut(s) 108, 239, 313, 421
AspS9I GGNCC 2 cut(s) 484, 604
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 6 cut(s) 23, 108, 256, 451, 569, 649
AvaII GGWCC 2 cut(s) 484, 604
BalI TGGCCA 1 cut(s) 599
BanII GRGCYC 2 cut(s) 330, 807
BauI CACGAG 1 cut(s) 674
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 2 cut(s) 226, 559
BccI CCATC 3 cut(s) 59, 76, 427
BceAI ACGGC 4 cut(s) 278, 340, 381, 832
BciT130I CCWGG 1 cut(s) 331
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 367, 432, 1007
BfaI CTAG 2 cut(s) 569, 576
BfoI RGCGCY 1 cut(s) 422
BisI GCNGC 6 cut(s) 101, 104, 240, 255, 300, 573
BlsI GCNGC 6 cut(s) 102, 105, 241, 256, 301, 574
BmcAI AGTACT 1 cut(s) 959
Bme1390I CCNGG 2 cut(s) 331, 346
Bme18I GGWCC 2 cut(s) 484, 604
BmgT120I GGNCC 2 cut(s) 484, 604
BmiI GGNNCC 3 cut(s) 327, 606, 831
BmrFI CCNGG 2 cut(s) 331, 346
BmsI GCATC 2 cut(s) 784, 873
BpiI GAAGAC 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 346
BsaBI GATNNNNATC 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 5 cut(s) 318, 329, 330, 600, 833
BsaWI WCCGGW 1 cut(s) 486
Bsc4I CCNNNNNNNGG 2 cut(s) 613, 630
Bse118I RCCGGY 2 cut(s) 313, 486
Bse3DI GCAATG 1 cut(s) 705
Bse8I GATNNNNATC 1 cut(s) 497
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 5 cut(s) 318, 329, 330, 600, 833
BseGI GGATG 3 cut(s) 739, 799, 943
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 2 cut(s) 613, 630
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 1 cut(s) 891
BseRI GAGGAG 7 cut(s) 100, 103, 145, 148, 151, 398, 842
BseX3I CGGCCG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 226, 559
Bsh1236I CGCG 3 cut(s) 106, 311, 368
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 7 cut(s) 100, 317, 536, 599, 623, 782, 847
BshTI ACCGGT 1 cut(s) 486
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 807
BsiSI CCGG 5 cut(s) 97, 314, 345, 487, 506
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 2 cut(s) 613, 630
BsmAI GTCTC 3 cut(s) 367, 432, 1007
BsmFI GGGAC 1 cut(s) 755
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 7 cut(s) 100, 317, 536, 599, 623, 782, 847
Bso31I GGTCTC 1 cut(s) 432
Bsp1286I GDGCHC 2 cut(s) 330, 807
Bsp143I GATC 2 cut(s) 492, 498
BspANI GGCC 7 cut(s) 100, 317, 536, 599, 623, 782, 847
BspCNI CTCAG 1 cut(s) 892
BspFNI CGCG 3 cut(s) 106, 311, 368
BspLI GGNNCC 3 cut(s) 327, 606, 831
BspTNI GGTCTC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 705
BsrFI RCCGGY 2 cut(s) 313, 486
BssAI RCCGGY 2 cut(s) 313, 486
BssECI CCNNGG 5 cut(s) 318, 329, 330, 600, 833
BssMI GATC 2 cut(s) 492, 498
BssSI CACGAG 1 cut(s) 674
BssT1I CCWWGG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 3 cut(s) 29, 65, 322
Bst6I CTCTTC 3 cut(s) 615, 654, 677
BstC8I GCNNGC 3 cut(s) 235, 291, 315
BstDEI CTNAG 1 cut(s) 900
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 3 cut(s) 739, 799, 943
BstFNI CGCG 3 cut(s) 106, 311, 368
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 4 cut(s) 108, 239, 313, 421
BstKTI GATC 2 cut(s) 495, 501
BstMAI GTCTC 3 cut(s) 367, 432, 1007
BstMBI GATC 2 cut(s) 492, 498
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 5 cut(s) 239, 245, 254, 299, 308
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 2 cut(s) 976, 1033
BstSCI CCNGG 2 cut(s) 329, 344
BstUI CGCG 3 cut(s) 106, 311, 368
BstV1I GCAGC 2 cut(s) 226, 559
BstV2I GAAGAC 1 cut(s) 516
BstZI CGGCCG 1 cut(s) 98
BsuRI GGCC 7 cut(s) 100, 317, 536, 599, 623, 782, 847
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 3 cut(s) 739, 799, 943
Cac8I GCNNGC 3 cut(s) 235, 291, 315
CaiI CAGNNNCTG 1 cut(s) 481
CfoI GCGC 4 cut(s) 108, 239, 313, 421
Cfr10I RCCGGY 2 cut(s) 313, 486
Cfr13I GGNCC 2 cut(s) 484, 604
CseI GACGC 2 cut(s) 374, 636
Csp6I GTAC 1 cut(s) 958
CspAI ACCGGT 1 cut(s) 486
CviAII CATG 4 cut(s) 268, 629, 973, 1030
CviQI GTAC 1 cut(s) 958
DdeI CTNAG 1 cut(s) 900
DpnI GATC 2 cut(s) 494, 500
DpnII GATC 2 cut(s) 492, 498
DrdI GACNNNNNNGTC 1 cut(s) 1021
DseDI GACNNNNNNGTC 1 cut(s) 1021
EaeI YGGCCR 3 cut(s) 98, 315, 597
EagI CGGCCG 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 615, 654, 677
EarI CTCTTC 3 cut(s) 615, 654, 677
EciI GGCGGA 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 805
EclXI CGGCCG 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 600
Eco147I AGGCCT 1 cut(s) 623
Eco24I GRGCYC 2 cut(s) 330, 807
Eco31I GGTCTC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 484, 604
Eco47III AGCGCT 1 cut(s) 420
Eco52I CGGCCG 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 805
Eco57I CTGAAG 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 600
EcoT22I ATGCAT 1 cut(s) 799
EcoT38I GRGCYC 2 cut(s) 330, 807
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 4 cut(s) 271, 632, 976, 1033
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FaqI GGGAC 1 cut(s) 755
FatI CATG 4 cut(s) 267, 628, 972, 1029
FauI CCCGC 1 cut(s) 1012
Fnu4HI GCNGC 6 cut(s) 101, 104, 240, 255, 300, 573
FokI GGATG 3 cut(s) 746, 806, 930
FriOI GRGCYC 2 cut(s) 330, 807
Fsp4HI GCNGC 6 cut(s) 101, 104, 240, 255, 300, 573
FspBI CTAG 2 cut(s) 569, 576
GlaI GCGC 4 cut(s) 107, 238, 312, 420
GluI GCNGC 6 cut(s) 101, 104, 240, 255, 300, 573
HaeII RGCGCY 1 cut(s) 422
HaeIII GGCC 7 cut(s) 100, 317, 536, 599, 623, 782, 847
HapII CCGG 5 cut(s) 97, 314, 345, 487, 506
HgaI GACGC 2 cut(s) 374, 636
HhaI GCGC 4 cut(s) 108, 239, 313, 421
Hin1II CATG 4 cut(s) 271, 632, 976, 1033
Hin6I GCGC 4 cut(s) 106, 237, 311, 419
HinP1I GCGC 4 cut(s) 106, 237, 311, 419
HindIII AAGCTT 2 cut(s) 926, 986
HinfI GANTC 3 cut(s) 5, 273, 940
HpaII CCGG 5 cut(s) 97, 314, 345, 487, 506
HphI GGTGA 6 cut(s) 23, 108, 256, 451, 569, 649
Hpy166II GTNNAC 1 cut(s) 1006
Hpy188I TCNGA 4 cut(s) 146, 432, 658, 733
Hpy188III TCNNGA 3 cut(s) 496, 812, 922
Hpy8I GTNNAC 1 cut(s) 1006
Hpy99I CGWCG 3 cut(s) 183, 299, 652
HpyAV CCTTC 3 cut(s) 103, 526, 688
HpyCH4III ACNGT 3 cut(s) 29, 65, 322
HpyCH4V TGCA 2 cut(s) 711, 797
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 245, 254, 299, 308
HpyF3I CTNAG 1 cut(s) 900
Hsp92II CATG 4 cut(s) 271, 632, 976, 1033
HspAI GCGC 4 cut(s) 106, 237, 311, 419
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 2 cut(s) 492, 498
LmnI GCTCC 5 cut(s) 113, 325, 385, 802, 829
Lsp1109I GCAGC 2 cut(s) 226, 559
LweI GCATC 2 cut(s) 784, 873
MaeI CTAG 2 cut(s) 569, 576
MaeIII GTNAC 2 cut(s) 29, 398
MalI GATC 2 cut(s) 494, 500
MboI GATC 2 cut(s) 492, 498
MboII GAAGA 9 cut(s) 81, 253, 347, 521, 602, 671, 694, 898, 901
MfeI CAATTG 1 cut(s) 524
MhlI GDGCHC 2 cut(s) 330, 807
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 7 cut(s) 350, 378, 524, 581, 665, 765, 908
MluNI TGGCCA 1 cut(s) 599
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 599
Mph1103I ATGCAT 1 cut(s) 799
MroNI GCCGGC 1 cut(s) 313
MroXI GAANNNNTTC 3 cut(s) 420, 471, 908
MscI TGGCCA 1 cut(s) 599
MseI TTAA 1 cut(s) 747
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 1019
MspI CCGG 5 cut(s) 97, 314, 345, 487, 506
MspR9I CCNGG 2 cut(s) 331, 346
MunI CAATTG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 3 cut(s) 106, 311, 368
MwoI GCNNNNNNNGC 5 cut(s) 239, 245, 254, 299, 308
NaeI GCCGGC 1 cut(s) 315
NciI CCSGG 1 cut(s) 346
NdeII GATC 2 cut(s) 492, 498
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 4 cut(s) 271, 632, 976, 1033
NlaIV GGNNCC 3 cut(s) 327, 606, 831
NmeAIII GCCGAG 1 cut(s) 858
NmuCI GTSAC 2 cut(s) 29, 398
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 2 cut(s) 976, 1033
PasI CCCWGGG 1 cut(s) 330
PceI AGGCCT 1 cut(s) 623
PciI ACATGT 2 cut(s) 972, 1029
PctI GAATGC 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 315
PdmI GAANNNNTTC 3 cut(s) 420, 471, 908
PfeI GAWTC 2 cut(s) 273, 940
PinAI ACCGGT 1 cut(s) 486
PkrI GCNGC 6 cut(s) 102, 105, 241, 256, 301, 574
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 604
PscI ACATGT 2 cut(s) 972, 1029
Psp124BI GAGCTC 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 3 cut(s) 327, 606, 831
PspPI GGNCC 2 cut(s) 484, 604
PspPPI RGGWCCY 1 cut(s) 604
PstNI CAGNNNCTG 1 cut(s) 481
RsaI GTAC 1 cut(s) 959
RsaNI GTAC 1 cut(s) 958
SacI GAGCTC 1 cut(s) 807
SaqAI TTAA 1 cut(s) 747
SatI GCNGC 6 cut(s) 101, 104, 240, 255, 300, 573
Sau3AI GATC 2 cut(s) 492, 498
Sau96I GGNCC 2 cut(s) 484, 604
ScaI AGTACT 1 cut(s) 959
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 331, 346
SduI GDGCHC 2 cut(s) 330, 807
SfaNI GCATC 2 cut(s) 784, 873
SinI GGWCC 2 cut(s) 484, 604
Sse9I AATT 7 cut(s) 350, 378, 524, 581, 665, 765, 908
SseBI AGGCCT 1 cut(s) 623
SspMI CTAG 2 cut(s) 569, 576
SstI GAGCTC 1 cut(s) 807
StuI AGGCCT 1 cut(s) 623
StyD4I CCNGG 2 cut(s) 329, 344
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 3 cut(s) 29, 65, 322
TaqI TCGA 8 cut(s) 181, 414, 495, 501, 585, 769, 963, 1025
TaqII GACCGA 1 cut(s) 414
TasI AATT 7 cut(s) 350, 378, 524, 581, 665, 765, 908
TatI WGTACW 1 cut(s) 957
TauI GCSGC 4 cut(s) 103, 106, 257, 302
TfiI GAWTC 2 cut(s) 273, 940
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TseFI GTSAC 2 cut(s) 29, 398
TseI GCWGC 2 cut(s) 239, 572
Tsp45I GTSAC 2 cut(s) 29, 398
TspDTI ATGAA 2 cut(s) 533, 909
TspGWI ACGGA 1 cut(s) 479
VpaK11BI GGWCC 2 cut(s) 484, 604
XapI RAATTY 2 cut(s) 581, 765
XceI RCATGY 2 cut(s) 976, 1033
XmnI GAANNNNTTC 3 cut(s) 420, 471, 908
XspI CTAG 2 cut(s) 569, 576
ZrmI AGTACT 1 cut(s) 959
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.