Rmu_co8106558.1_g000001

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8106558.1
OG0011182
Physical Location & Seq
Forward (+)
1 .. 606
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8106558.1_g000001.1.cds

Sequence Viewer

Length: 606 bp
ttgaggagcgattgagccgtgacccgaacgatgtcgaagcgcttcggtctctgatggaggtgaaaatcaaagcccacaagctgacggaagcggttgaggtgctggaccggttgatcgagatcgagccggaagactatgagtggcaattgctgaaggccaatgttcatacttatttgggtgagaatgacctagctgctagtgaattcgaggacattttggccaaggaccctcttcgggttgaggcctatcatgggctggtgatgtctgcgtcgcagtccgaagagaaattgaagctcgtgttgaagagggttgagaaggcaatggaggggtgcaagaagcaggggaacacttcggatgtgagggactttaagctgttgattgctcaaattcgagtaatggaggccgaatacaaggatgcattggagctctatcaagagcttgtgagggaggagccgagggatttcaggccgtatctgtgtcagggcatcatatacactctgttgaggaagaagaatgaagctgagaaacaattcgcaacattcaggaagcttgttcccaagaatcatccttacaaggagtacttcgatgataacatgtttgcgacca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

201

Amino Acids

23.6

Weight (kDa)

5.24

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 2 cut(s) 202, 386
AcuI CTGAAG 1 cut(s) 172
AfaI GTAC 1 cut(s) 580
AfeI AGCGCT 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 234, 251
AflIII ACRYGT 1 cut(s) 593
AgeI ACCGGT 1 cut(s) 107
AgsI TTSAA 2 cut(s) 291, 303
AluBI AGCT 8 cut(s) 81, 193, 294, 372, 426, 438, 520, 549
AluI AGCT 8 cut(s) 81, 193, 294, 372, 426, 438, 520, 549
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 1 cut(s) 53
Aor51HI AGCGCT 1 cut(s) 41
AoxI GGCC 5 cut(s) 155, 218, 242, 401, 466
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 2 cut(s) 202, 386
AsiGI ACCGGT 1 cut(s) 107
Asp700I GAANNNNTTC 2 cut(s) 41, 529
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 105, 225
AsuHPI GGTGA 3 cut(s) 72, 190, 270
AvaII GGWCC 2 cut(s) 105, 225
BalI TGGCCA 1 cut(s) 220
BanII GRGCYC 1 cut(s) 428
BauI CACGAG 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 48
BceAI ACGGC 2 cut(s) 2, 453
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 190, 197
BfoI RGCGCY 1 cut(s) 43
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
BmcAI AGTACT 1 cut(s) 580
Bme18I GGWCC 2 cut(s) 105, 225
BmgT120I GGNCC 2 cut(s) 105, 225
BmiI GGNNCC 2 cut(s) 227, 452
BmsI GCATC 2 cut(s) 405, 494
BpiI GAAGAC 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 221, 454
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 251
Bse118I RCCGGY 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 221, 454
BseGI GGATG 3 cut(s) 360, 420, 564
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 234, 251
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 512
BseRI GAGGAG 2 cut(s) 19, 463
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 5 cut(s) 157, 220, 244, 403, 468
BshTI ACCGGT 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 428
BsiSI CCGG 2 cut(s) 108, 127
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 234, 251
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 5 cut(s) 157, 220, 244, 403, 468
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 2 cut(s) 113, 119
BspACI CCGC 1 cut(s) 91
BspANI GGCC 5 cut(s) 157, 220, 244, 403, 468
BspCNI CTCAG 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 227, 452
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 221, 454
BssMI GATC 2 cut(s) 113, 119
BssSI CACGAG 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 295
Bst6I CTCTTC 3 cut(s) 236, 275, 298
BstDEI CTNAG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 360, 420, 564
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 116, 122
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 113, 119
BstNSI RCATGY 1 cut(s) 597
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 5 cut(s) 157, 220, 244, 403, 468
BtsCI GGATG 3 cut(s) 360, 420, 564
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 105, 225
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 579
CspAI ACCGGT 1 cut(s) 107
CviAII CATG 2 cut(s) 250, 594
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 1 cut(s) 521
DpnI GATC 2 cut(s) 115, 121
DpnII GATC 2 cut(s) 113, 119
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 3 cut(s) 236, 275, 298
EarI CTCTTC 3 cut(s) 236, 275, 298
Ecl136II GAGCTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 428
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 105, 225
Eco47III AGCGCT 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 253, 597
FaiI YATR 6 cut(s) 137, 167, 251, 490, 492, 595
FalI AAGNNNNNCTT 2 cut(s) 565, 597
FaqI GGGAC 1 cut(s) 376
FatI CATG 2 cut(s) 249, 593
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 3 cut(s) 367, 427, 551
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 2 cut(s) 190, 197
GlaI GCGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 5 cut(s) 157, 220, 244, 403, 468
HapII CCGG 2 cut(s) 108, 127
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 253, 597
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 1 cut(s) 561
HpaII CCGG 2 cut(s) 108, 127
HphI GGTGA 3 cut(s) 72, 190, 270
Hpy188I TCNGA 3 cut(s) 53, 279, 354
Hpy188III TCNNGA 3 cut(s) 117, 433, 543
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 147, 309
HpyCH4V TGCA 2 cut(s) 332, 418
HpyF3I CTNAG 1 cut(s) 521
Hsp92II CATG 2 cut(s) 253, 597
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 2 cut(s) 113, 119
LmnI GCTCC 3 cut(s) 6, 423, 450
LpnPI CCDG 8 cut(s) 88, 121, 140, 241, 325, 450, 466, 528
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 2 cut(s) 405, 494
MaeI CTAG 2 cut(s) 190, 197
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 115, 121
MboI GATC 2 cut(s) 113, 119
MboII GAAGA 6 cut(s) 142, 223, 292, 315, 519, 522
MfeI CAATTG 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 428
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 5 cut(s) 145, 202, 286, 386, 529
MluNI TGGCCA 1 cut(s) 220
Mox20I TGGCCA 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 420
MroXI GAANNNNTTC 2 cut(s) 41, 529
MscI TGGCCA 1 cut(s) 220
MseI TTAA 1 cut(s) 368
Msp20I TGGCCA 1 cut(s) 220
MspI CCGG 2 cut(s) 108, 127
MunI CAATTG 1 cut(s) 145
NdeII GATC 2 cut(s) 113, 119
NlaIII CATG 2 cut(s) 253, 597
NlaIV GGNNCC 2 cut(s) 227, 452
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 1 cut(s) 597
PceI AGGCCT 1 cut(s) 244
PciI ACATGT 1 cut(s) 593
PdmI GAANNNNTTC 2 cut(s) 41, 529
PfeI GAWTC 1 cut(s) 561
PinAI ACCGGT 1 cut(s) 107
PkrI GCNGC 1 cut(s) 195
PpuMI RGGWCCY 1 cut(s) 225
PscI ACATGT 1 cut(s) 593
Psp124BI GAGCTC 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 227, 452
PspPI GGNCC 2 cut(s) 105, 225
PspPPI RGGWCCY 1 cut(s) 225
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
SacI GAGCTC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 2 cut(s) 113, 119
Sau96I GGNCC 2 cut(s) 105, 225
ScaI AGTACT 1 cut(s) 580
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 2 cut(s) 405, 494
SinI GGWCC 2 cut(s) 105, 225
Sse9I AATT 5 cut(s) 145, 202, 286, 386, 529
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 1 cut(s) 91
SspMI CTAG 2 cut(s) 190, 197
SstI GAGCTC 1 cut(s) 428
StuI AGGCCT 1 cut(s) 244
StyI CCWWGG 1 cut(s) 221
TaqI TCGA 6 cut(s) 35, 116, 122, 206, 390, 584
TaqII GACCGA 1 cut(s) 35
TasI AATT 5 cut(s) 145, 202, 286, 386, 529
TatI WGTACW 1 cut(s) 578
TfiI GAWTC 1 cut(s) 561
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 154, 530
TspGWI ACGGA 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 105, 225
XapI RAATTY 2 cut(s) 202, 386
XceI RCATGY 1 cut(s) 597
XmnI GAANNNNTTC 2 cut(s) 41, 529
XspI CTAG 2 cut(s) 190, 197
ZrmI AGTACT 1 cut(s) 580
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.