Rmu_sc0013459.1_g000004

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013459.1
OG0011182
Physical Location & Seq
Reverse (-)
26961 .. 27992
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013459.1_g000004.1.cds

Sequence Viewer

Length: 1032 bp
atggagtccctcgctaaactcaaccaccgtcaccaacctctccacctctccatcaatccccaccgtccatctttccctaaccccatttcttccttccggccgccgcgctcctcctcacccctcaacttctcccccctcaaaatccgagccacctcctcctcctcctccgccgacccacctcgtcaaaccccccaaaaaccctcgttcctccaaaccctatcccctctcgcctgcgccgccatagccgccgccgcattcttcaccatgcggttccaccccaccaagcccgctgtcgccgccccaatcgcgccggccacggtggagcccagggaagaaaccgccgggaaattgccgtatgaggacgcggagagacaaattgaggagcgattgagccgtgacccgaacgatgtcgaagcgcttcggtctctgatggaggtgaaaatcaaagcccacaagctgacggaagcggttgaggtgctggaccggttgatcgagatcgagccggaagactatgagtggcaattgctgaaggccaatgttcatacttatttgggtgagaatgacctagctgctagtgaattcgaggacattttggccaaggaccctcttcgggttgaggcctatcatgggctggtgatgtctgcgtcgcagtccgaagagaaattgaagctcgtgttgaagagggttgagaaggcaatggaggggtgcaagaagcaggggaacacttcggatgtgagggactttaagctgttgattgctcaaattcgagtaatggaggccgaatacaaggatgcattggagctctatcaagagcttgtgagggaggagccgagggatttcaggccgtatctgtgtcagggcatcatatacactctgttgaggaagaagaatgaagctgagaaacaattcgcaacattcaggaagcttgttcccaagaatcatccttacaaggagtacttcgatgataacatgtttgcgaccaagctttttggggcaaaggtggacagggagacagcggggtcgaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

343

Amino Acids

39.02

Weight (kDa)

6.78

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1018
AccII CGCG 3 cut(s) 106, 308, 365
AcoI YGGCCR 3 cut(s) 98, 312, 594
AcsI RAATTY 2 cut(s) 578, 762
AcuI CTGAAG 1 cut(s) 548
AfaI GTAC 1 cut(s) 956
AfeI AGCGCT 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 610, 627
AflIII ACRYGT 2 cut(s) 969, 1026
AgeI ACCGGT 1 cut(s) 483
AgsI TTSAA 2 cut(s) 667, 679
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 9 cut(s) 457, 569, 670, 748, 802, 814, 896, 925, 985
AluI AGCT 9 cut(s) 457, 569, 670, 748, 802, 814, 896, 925, 985
Alw21I GWGCWC 1 cut(s) 804
Alw26I GTCTC 3 cut(s) 364, 429, 1004
Aor51HI AGCGCT 1 cut(s) 417
AoxI GGCC 7 cut(s) 98, 312, 531, 594, 618, 777, 842
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 578, 762
AsiGI ACCGGT 1 cut(s) 483
Asp700I GAANNNNTTC 2 cut(s) 417, 905
AspLEI GCGC 4 cut(s) 108, 236, 310, 418
AspS9I GGNCC 2 cut(s) 481, 601
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 6 cut(s) 23, 108, 253, 448, 566, 646
AvaII GGWCC 2 cut(s) 481, 601
BalI TGGCCA 1 cut(s) 596
BanII GRGCYC 2 cut(s) 327, 804
BauI CACGAG 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 804
BbvI GCAGC 1 cut(s) 556
BccI CCATC 3 cut(s) 59, 76, 424
BceAI ACGGC 3 cut(s) 337, 378, 829
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 364, 429, 1004
BfaI CTAG 2 cut(s) 566, 573
BfoI RGCGCY 1 cut(s) 419
BisI GCNGC 8 cut(s) 101, 104, 237, 246, 249, 252, 297, 570
BlsI GCNGC 8 cut(s) 102, 105, 238, 247, 250, 253, 298, 571
BmcAI AGTACT 1 cut(s) 956
Bme1390I CCNGG 2 cut(s) 328, 343
Bme18I GGWCC 2 cut(s) 481, 601
BmgT120I GGNCC 2 cut(s) 481, 601
BmiI GGNNCC 4 cut(s) 272, 324, 603, 828
BmrFI CCNGG 2 cut(s) 328, 343
BmsI GCATC 2 cut(s) 781, 870
BpiI GAAGAC 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 5 cut(s) 315, 326, 327, 597, 830
BsaWI WCCGGW 1 cut(s) 483
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 627
Bse118I RCCGGY 2 cut(s) 310, 483
Bse3DI GCAATG 1 cut(s) 702
Bse8I GATNNNNATC 1 cut(s) 494
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 5 cut(s) 315, 326, 327, 597, 830
BseGI GGATG 3 cut(s) 736, 796, 940
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 610, 627
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 1 cut(s) 888
BseRI GAGGAG 8 cut(s) 100, 103, 145, 148, 151, 154, 395, 839
BseX3I CGGCCG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 556
Bsh1236I CGCG 3 cut(s) 106, 308, 365
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 7 cut(s) 100, 314, 533, 596, 620, 779, 844
BshTI ACCGGT 1 cut(s) 483
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 804
BsiSI CCGG 5 cut(s) 97, 311, 342, 484, 503
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 2 cut(s) 610, 627
BsmAI GTCTC 3 cut(s) 364, 429, 1004
BsmFI GGGAC 1 cut(s) 752
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 7 cut(s) 100, 314, 533, 596, 620, 779, 844
Bso31I GGTCTC 1 cut(s) 429
Bsp1286I GDGCHC 2 cut(s) 327, 804
Bsp143I GATC 2 cut(s) 489, 495
BspANI GGCC 7 cut(s) 100, 314, 533, 596, 620, 779, 844
BspCNI CTCAG 1 cut(s) 889
BspFNI CGCG 3 cut(s) 106, 308, 365
BspLI GGNNCC 4 cut(s) 272, 324, 603, 828
BspTNI GGTCTC 1 cut(s) 429
BsrDI GCAATG 1 cut(s) 702
BsrFI RCCGGY 2 cut(s) 310, 483
BssAI RCCGGY 2 cut(s) 310, 483
BssECI CCNNGG 5 cut(s) 315, 326, 327, 597, 830
BssMI GATC 2 cut(s) 489, 495
BssSI CACGAG 1 cut(s) 671
BssT1I CCWWGG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 671
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 29, 65, 319
Bst6I CTCTTC 3 cut(s) 612, 651, 674
BstC8I GCNNGC 3 cut(s) 232, 288, 312
BstDEI CTNAG 1 cut(s) 897
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 3 cut(s) 736, 796, 940
BstFNI CGCG 3 cut(s) 106, 308, 365
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 4 cut(s) 108, 236, 310, 418
BstKTI GATC 2 cut(s) 492, 498
BstMAI GTCTC 3 cut(s) 364, 429, 1004
BstMBI GATC 2 cut(s) 489, 495
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 6 cut(s) 236, 242, 245, 251, 296, 305
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 2 cut(s) 973, 1030
BstSCI CCNGG 2 cut(s) 326, 341
BstUI CGCG 3 cut(s) 106, 308, 365
BstV1I GCAGC 1 cut(s) 556
BstV2I GAAGAC 1 cut(s) 513
BstZI CGGCCG 1 cut(s) 98
BsuRI GGCC 7 cut(s) 100, 314, 533, 596, 620, 779, 844
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 3 cut(s) 736, 796, 940
Cac8I GCNNGC 3 cut(s) 232, 288, 312
CfoI GCGC 4 cut(s) 108, 236, 310, 418
Cfr10I RCCGGY 2 cut(s) 310, 483
Cfr13I GGNCC 2 cut(s) 481, 601
CseI GACGC 2 cut(s) 371, 633
Csp6I GTAC 1 cut(s) 955
CspAI ACCGGT 1 cut(s) 483
CviAII CATG 4 cut(s) 265, 626, 970, 1027
CviQI GTAC 1 cut(s) 955
DdeI CTNAG 1 cut(s) 897
DpnI GATC 2 cut(s) 491, 497
DpnII GATC 2 cut(s) 489, 495
DrdI GACNNNNNNGTC 1 cut(s) 1018
DseDI GACNNNNNNGTC 1 cut(s) 1018
EaeI YGGCCR 3 cut(s) 98, 312, 594
EagI CGGCCG 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 612, 651, 674
EarI CTCTTC 3 cut(s) 612, 651, 674
EciI GGCGGA 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 802
EclXI CGGCCG 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 620
Eco24I GRGCYC 2 cut(s) 327, 804
Eco31I GGTCTC 1 cut(s) 429
Eco47I GGWCC 2 cut(s) 481, 601
Eco47III AGCGCT 1 cut(s) 417
Eco52I CGGCCG 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 597
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 2 cut(s) 327, 804
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 4 cut(s) 268, 629, 973, 1030
FalI AAGNNNNNCTT 2 cut(s) 941, 973
FaqI GGGAC 1 cut(s) 752
FatI CATG 4 cut(s) 264, 625, 969, 1026
FauI CCCGC 2 cut(s) 295, 1009
Fnu4HI GCNGC 8 cut(s) 101, 104, 237, 246, 249, 252, 297, 570
FokI GGATG 3 cut(s) 743, 803, 927
FriOI GRGCYC 2 cut(s) 327, 804
Fsp4HI GCNGC 8 cut(s) 101, 104, 237, 246, 249, 252, 297, 570
FspBI CTAG 2 cut(s) 566, 573
GlaI GCGC 4 cut(s) 107, 235, 309, 417
GluI GCNGC 8 cut(s) 101, 104, 237, 246, 249, 252, 297, 570
HaeII RGCGCY 1 cut(s) 419
HaeIII GGCC 7 cut(s) 100, 314, 533, 596, 620, 779, 844
HapII CCGG 5 cut(s) 97, 311, 342, 484, 503
HgaI GACGC 2 cut(s) 371, 633
HhaI GCGC 4 cut(s) 108, 236, 310, 418
Hin1II CATG 4 cut(s) 268, 629, 973, 1030
Hin6I GCGC 4 cut(s) 106, 234, 308, 416
HinP1I GCGC 4 cut(s) 106, 234, 308, 416
HindIII AAGCTT 2 cut(s) 923, 983
HinfI GANTC 2 cut(s) 5, 937
HpaII CCGG 5 cut(s) 97, 311, 342, 484, 503
HphI GGTGA 6 cut(s) 23, 108, 253, 448, 566, 646
Hpy166II GTNNAC 1 cut(s) 1003
Hpy188I TCNGA 4 cut(s) 146, 429, 655, 730
Hpy188III TCNNGA 3 cut(s) 493, 809, 919
Hpy8I GTNNAC 1 cut(s) 1003
Hpy99I CGWCG 1 cut(s) 649
HpyAV CCTTC 3 cut(s) 103, 523, 685
HpyCH4III ACNGT 3 cut(s) 29, 65, 319
HpyCH4V TGCA 2 cut(s) 708, 794
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 242, 245, 251, 296, 305
HpyF3I CTNAG 1 cut(s) 897
Hsp92II CATG 4 cut(s) 268, 629, 973, 1030
HspAI GCGC 4 cut(s) 106, 234, 308, 416
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 489, 495
LmnI GCTCC 5 cut(s) 113, 322, 382, 799, 826
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 2 cut(s) 781, 870
MaeI CTAG 2 cut(s) 566, 573
MaeIII GTNAC 2 cut(s) 29, 395
MalI GATC 2 cut(s) 491, 497
MboI GATC 2 cut(s) 489, 495
MboII GAAGA 9 cut(s) 81, 250, 344, 518, 599, 668, 691, 895, 898
MfeI CAATTG 1 cut(s) 521
MhlI GDGCHC 2 cut(s) 327, 804
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 7 cut(s) 347, 375, 521, 578, 662, 762, 905
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 796
MroNI GCCGGC 1 cut(s) 310
MroXI GAANNNNTTC 2 cut(s) 417, 905
MscI TGGCCA 1 cut(s) 596
MseI TTAA 1 cut(s) 744
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 2 cut(s) 290, 1016
MspI CCGG 5 cut(s) 97, 311, 342, 484, 503
MspR9I CCNGG 2 cut(s) 328, 343
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 3 cut(s) 106, 308, 365
MwoI GCNNNNNNNGC 6 cut(s) 236, 242, 245, 251, 296, 305
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 1 cut(s) 343
NdeII GATC 2 cut(s) 489, 495
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 4 cut(s) 268, 629, 973, 1030
NlaIV GGNNCC 4 cut(s) 272, 324, 603, 828
NmeAIII GCCGAG 1 cut(s) 855
NmuCI GTSAC 2 cut(s) 29, 395
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 2 cut(s) 973, 1030
PasI CCCWGGG 1 cut(s) 327
PceI AGGCCT 1 cut(s) 620
PciI ACATGT 2 cut(s) 969, 1026
PctI GAATGC 1 cut(s) 254
PdiI GCCGGC 1 cut(s) 312
PdmI GAANNNNTTC 2 cut(s) 417, 905
PfeI GAWTC 1 cut(s) 937
PinAI ACCGGT 1 cut(s) 483
PkrI GCNGC 8 cut(s) 102, 105, 238, 247, 250, 253, 298, 571
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 601
PscI ACATGT 2 cut(s) 969, 1026
Psp124BI GAGCTC 1 cut(s) 804
Psp5II RGGWCCY 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 4 cut(s) 272, 324, 603, 828
PspPI GGNCC 2 cut(s) 481, 601
PspPPI RGGWCCY 1 cut(s) 601
RsaI GTAC 1 cut(s) 956
RsaNI GTAC 1 cut(s) 955
SacI GAGCTC 1 cut(s) 804
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 8 cut(s) 101, 104, 237, 246, 249, 252, 297, 570
Sau3AI GATC 2 cut(s) 489, 495
Sau96I GGNCC 2 cut(s) 481, 601
ScaI AGTACT 1 cut(s) 956
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 328, 343
SduI GDGCHC 2 cut(s) 327, 804
SfaNI GCATC 2 cut(s) 781, 870
SinI GGWCC 2 cut(s) 481, 601
Sse9I AATT 7 cut(s) 347, 375, 521, 578, 662, 762, 905
SseBI AGGCCT 1 cut(s) 620
SspMI CTAG 2 cut(s) 566, 573
SstI GAGCTC 1 cut(s) 804
StuI AGGCCT 1 cut(s) 620
StyD4I CCNGG 2 cut(s) 326, 341
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 29, 65, 319
TaqI TCGA 7 cut(s) 411, 492, 498, 582, 766, 960, 1022
TaqII GACCGA 1 cut(s) 411
TasI AATT 7 cut(s) 347, 375, 521, 578, 662, 762, 905
TatI WGTACW 1 cut(s) 954
TauI GCSGC 7 cut(s) 103, 106, 239, 248, 251, 254, 299
TfiI GAWTC 1 cut(s) 937
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TseFI GTSAC 2 cut(s) 29, 395
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 2 cut(s) 29, 395
TspDTI ATGAA 2 cut(s) 530, 906
TspGWI ACGGA 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 481, 601
XapI RAATTY 2 cut(s) 578, 762
XceI RCATGY 2 cut(s) 973, 1030
XmnI GAANNNNTTC 2 cut(s) 417, 905
XspI CTAG 2 cut(s) 566, 573
ZrmI AGTACT 1 cut(s) 956
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.