pycom04g10840

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0011182
Physical Location & Seq
Reverse (-)
13638689 .. 13640011
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10840.1

Sequence Viewer

Length: 1173 bp
ATGTCGAATTCCTCTGTCCAGCTCCTTCTCGAATGTCCCATTAAGGAAACGACCCTACGACACCGGTTTTACAAAACCCCAGTTCTCTCTCAGTCCATGGAGTCTCTCGCCAAACTTCACCACCGTCACCAACCCCTCACCCTCTCGCTCAATTCCCACTGCCCATCATCCCCAAAACCCCTTTCTTCCTTCATACCCCCGCGCCAATCGCCGCCCTTCAACTTCACCACCCTCGCTGTCAGAGCCTCATCCTCATCGCTTCCGCCGTCCTCGGCCCACCCACCTCACCAAAGCCCACAAAACCCTAATCCCATTTCCTCTTTCAAAACCCTAGCCCCTCTTGCCGCCCCTATCATCAAGACGACCTGCGCCGCCATCGCTGCCGCCACATTATTCTTCATGAGGTTCAATCACCGAACCGCTATGGCCGCCACCGCAGTCGCACCTTCCATGGTTGAGCCAGTGGAGCAAGAATCATCCACTGACAGAGTTCCGTATGAGGAGAAAGAAAGGGTTCTTGAAGAGCAATTGGCCCAGAACCCGGATGATGTCGAATCGCTCAGGAATTTAATGGAGGTCAGGATCAAATCCCACAAGCTGACCGAAGCGATTCAGGTGTTGGAGCGATCGATCGAGCTGGAACCCGAAGACTTTGAGTGGCAATTGCTGAAGGCCAATGTTCACAGCTACATGGGTGAAGTCGAACTCGCTAACGCTGAGTTCGAGGACATTTTGGCGAAAGACCCTTTCAAAGTAGAGGCCTTTCATGGCCTTGTAATGTGCGCTTCACAATCACCGGAGAAATTGAAGAGTGTGACGAAGAGGGTGGAGGAGGCAATGGTGAAGTGTAAGAAGGAAGGGAACATGTCGGATGTGAGGGATTTTAAGCTGTTAGTTGCGCAAATTCGCGTGATGGAGTCGAAGTATTCGGATGCTTTGAAGCTTTATCAAGAGCTTGTGAGGGAAGAACCGAGAGACTTCAGGCCTTATCTGTGTCAAGGAATCATTTATACAATGTTGAGGAAGACTAATGAGGCTGAGAAACAGTTTGAAAAGTTCAGGAAGCTTGTTCCAAAGAACCACCCTTATAAAGAGTATTTTGATGACAATATGTTTGCGACGAAGCTTTTTGGGCAGAAGGTGGAGAGGGAGAGAGCAGCGTCGAAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

391

Amino Acids

44.46

Weight (kDa)

8.11

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 171 - 226 3.5e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1089
Acc16I TGCGCA 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 374
AccII CGCG 2 cut(s) 202, 909
AciI CCGC 9 cut(s) 200, 212, 263, 345, 372, 384, 420, 429, 435
AclWI GGATC 1 cut(s) 590
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 3 cut(s) 7, 565, 903
AcuI CTGAAG 2 cut(s) 689, 964
AfiI CCNNNNNNNGG 1 cut(s) 541
AflIII ACRYGT 1 cut(s) 864
AgeI ACCGGT 1 cut(s) 63
AgsI TTSAA 8 cut(s) 220, 325, 409, 521, 751, 808, 940, 1052
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 9 cut(s) 22, 598, 637, 687, 889, 943, 955, 1066, 1126
AluI AGCT 9 cut(s) 22, 598, 637, 687, 889, 943, 955, 1066, 1126
Alw26I GTCTC 2 cut(s) 108, 969
AlwI GGATC 1 cut(s) 590
AoxI GGCC 7 cut(s) 273, 426, 531, 672, 759, 769, 983
ApeKI GCWGC 2 cut(s) 380, 1157
ApoI RAATTY 3 cut(s) 7, 565, 903
ArsI GACNNNNNNTTYG 2 cut(s) 1097, 1129
AsiGI ACCGGT 1 cut(s) 63
Asp700I GAANNNNTTC 2 cut(s) 513, 609
AspLEI GCGC 4 cut(s) 204, 371, 785, 901
AspS9I GGNCC 2 cut(s) 274, 532
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 9 cut(s) 110, 119, 130, 217, 278, 404, 707, 786, 853
BbsI GAAGAC 2 cut(s) 654, 1031
BbvI GCAGC 2 cut(s) 367, 1169
BccI CCATC 3 cut(s) 172, 383, 907
BceAI ACGGC 1 cut(s) 250
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 2 cut(s) 108, 969
BfaI CTAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 374
BisI GCNGC 7 cut(s) 212, 345, 372, 381, 384, 429, 1158
BlsI GCNGC 7 cut(s) 213, 346, 373, 382, 385, 430, 1159
Bme1390I CCNGG 1 cut(s) 542
BmgT120I GGNCC 2 cut(s) 274, 532
BmiI GGNNCC 1 cut(s) 642
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 922
BmuI ACTGGG 1 cut(s) 74
BpiI GAAGAC 2 cut(s) 654, 1031
Bpu10I CCTNAGC 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 542
Bsa29I ATCGAT 1 cut(s) 629
BsaJI CCNNGG 3 cut(s) 96, 270, 450
BsaWI WCCGGW 2 cut(s) 63, 796
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 80, 461
Bse3DI GCAATG 1 cut(s) 843
BseCI ATCGAT 1 cut(s) 629
BseDI CCNNGG 3 cut(s) 96, 270, 450
BseGI GGATG 6 cut(s) 167, 248, 476, 550, 877, 937
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 4 cut(s) 104, 574, 708, 1029
BseNI ACTGG 2 cut(s) 80, 461
BseRI GAGGAG 2 cut(s) 515, 845
BseXI GCAGC 2 cut(s) 367, 1169
Bsh1236I CGCG 2 cut(s) 202, 909
Bsh1285I CGRYCG 2 cut(s) 629, 633
BshFI GGCC 7 cut(s) 275, 428, 533, 674, 761, 771, 985
BshTI ACCGGT 1 cut(s) 63
BshVI ATCGAT 1 cut(s) 629
BsiEI CGRYCG 2 cut(s) 629, 633
BsiSI CCGG 3 cut(s) 64, 542, 797
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 2 cut(s) 108, 969
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 7 cut(s) 275, 428, 533, 674, 761, 771, 985
Bsp143I GATC 3 cut(s) 582, 626, 630
Bsp19I CCATGG 2 cut(s) 96, 450
BspACI CCGC 9 cut(s) 200, 212, 263, 345, 372, 384, 420, 429, 435
BspANI GGCC 7 cut(s) 275, 428, 533, 674, 761, 771, 985
BspCNI CTCAG 4 cut(s) 103, 573, 709, 1030
BspDI ATCGAT 1 cut(s) 629
BspFNI CGCG 2 cut(s) 202, 909
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 642
BspMI ACCTGC 1 cut(s) 374
BspPI GGATC 1 cut(s) 590
BspQI GCTCTTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 843
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 2 cut(s) 80, 461
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 3 cut(s) 96, 270, 450
BssMI GATC 3 cut(s) 582, 626, 630
BssT1I CCWWGG 2 cut(s) 96, 450
Bst4CI ACNGT 2 cut(s) 125, 1047
Bst6I CTCTTC 3 cut(s) 516, 803, 815
BstDEI CTNAG 4 cut(s) 90, 560, 717, 1038
BstDSI CCRYGG 2 cut(s) 96, 450
BstF5I GGATG 6 cut(s) 167, 248, 476, 550, 877, 937
BstFNI CGCG 2 cut(s) 202, 909
BstHHI GCGC 4 cut(s) 204, 371, 785, 901
BstKTI GATC 3 cut(s) 585, 629, 633
BstMAI GTCTC 2 cut(s) 108, 969
BstMBI GATC 3 cut(s) 582, 626, 630
BstMCI CGRYCG 2 cut(s) 629, 633
BstMWI GCNNNNNNNGC 9 cut(s) 208, 242, 341, 377, 380, 428, 434, 466, 1132
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 1 cut(s) 540
BstUI CGCG 2 cut(s) 202, 909
BstV1I GCAGC 2 cut(s) 367, 1169
BstV2I GAAGAC 2 cut(s) 654, 1031
Bsu15I ATCGAT 1 cut(s) 629
BsuRI GGCC 7 cut(s) 275, 428, 533, 674, 761, 771, 985
BsuTUI ATCGAT 1 cut(s) 629
BtgI CCRYGG 2 cut(s) 96, 450
BtgZI GCGATG 2 cut(s) 240, 361
BtsCI GGATG 6 cut(s) 167, 248, 476, 550, 877, 937
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 157, 468, 480
BveI ACCTGC 1 cut(s) 374
CciI TCATGA 1 cut(s) 399
CfoI GCGC 4 cut(s) 204, 371, 785, 901
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 274, 532
ClaI ATCGAT 1 cut(s) 629
CseI GACGC 1 cut(s) 1149
CspAI ACCGGT 1 cut(s) 63
CviAII CATG 6 cut(s) 97, 400, 451, 691, 767, 865
DdeI CTNAG 4 cut(s) 90, 560, 717, 1038
DpnI GATC 3 cut(s) 584, 628, 632
DpnII GATC 3 cut(s) 582, 626, 630
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 3 cut(s) 516, 803, 815
EarI CTCTTC 3 cut(s) 516, 803, 815
EciI GGCGGA 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 96, 450
Eco147I AGGCCT 2 cut(s) 761, 985
Eco57I CTGAAG 2 cut(s) 689, 964
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 2 cut(s) 96, 450
ErhI CCWWGG 2 cut(s) 96, 450
FaeI CATG 6 cut(s) 100, 403, 454, 694, 770, 868
FaqI GGGAC 1 cut(s) 21
FatI CATG 6 cut(s) 96, 399, 450, 690, 766, 864
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 7 cut(s) 212, 345, 372, 381, 384, 429, 1158
FokI GGATG 6 cut(s) 154, 235, 463, 557, 884, 944
Fsp4HI GCNGC 7 cut(s) 212, 345, 372, 381, 384, 429, 1158
FspBI CTAG 1 cut(s) 332
FspI TGCGCA 1 cut(s) 900
GlaI GCGC 4 cut(s) 203, 370, 784, 900
GluI GCNGC 7 cut(s) 212, 345, 372, 381, 384, 429, 1158
HaeIII GGCC 7 cut(s) 275, 428, 533, 674, 761, 771, 985
HapII CCGG 3 cut(s) 64, 542, 797
HgaI GACGC 1 cut(s) 1149
HhaI GCGC 4 cut(s) 204, 371, 785, 901
Hin1II CATG 6 cut(s) 100, 403, 454, 694, 770, 868
Hin6I GCGC 4 cut(s) 202, 369, 783, 899
HinP1I GCGC 4 cut(s) 202, 369, 783, 899
HindIII AAGCTT 3 cut(s) 941, 1064, 1124
HinfI GANTC 6 cut(s) 101, 473, 554, 610, 917, 1002
HpaII CCGG 3 cut(s) 64, 542, 797
HphI GGTGA 9 cut(s) 110, 119, 130, 217, 278, 404, 707, 786, 853
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 4 cut(s) 242, 871, 931, 1172
Hpy188III TCNNGA 8 cut(s) 29, 358, 400, 518, 562, 580, 950, 1060
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 2 cut(s) 1123, 1165
HpyAV CCTTC 8 cut(s) 35, 199, 226, 456, 664, 847, 851, 1132
HpyCH4III ACNGT 2 cut(s) 125, 1047
HpyF10VI GCNNNNNNNGC 9 cut(s) 208, 242, 341, 377, 380, 428, 434, 466, 1132
HpyF3I CTNAG 4 cut(s) 90, 560, 717, 1038
Hsp92II CATG 6 cut(s) 100, 403, 454, 694, 770, 868
HspAI GCGC 4 cut(s) 202, 369, 783, 899
Kzo9I GATC 3 cut(s) 582, 626, 630
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 27, 466, 622
Lsp1109I GCAGC 2 cut(s) 367, 1169
LweI GCATC 1 cut(s) 922
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 125, 814
MalI GATC 3 cut(s) 584, 628, 632
MboI GATC 3 cut(s) 582, 626, 630
MboII GAAGA 8 cut(s) 177, 388, 533, 659, 820, 832, 977, 1036
MfeI CAATTG 2 cut(s) 527, 662
MluCI AATT 7 cut(s) 7, 151, 527, 565, 662, 803, 903
MlyI GAGTC 2 cut(s) 110, 926
MmeI TCCRAC 2 cut(s) 600, 849
MroXI GAANNNNTTC 2 cut(s) 513, 609
MseI TTAA 3 cut(s) 42, 569, 885
MspI CCGG 3 cut(s) 64, 542, 797
MspR9I CCNGG 1 cut(s) 542
MunI CAATTG 2 cut(s) 527, 662
MvnI CGCG 2 cut(s) 202, 909
MwoI GCNNNNNNNGC 9 cut(s) 208, 242, 341, 377, 380, 428, 434, 466, 1132
NciI CCSGG 1 cut(s) 542
NcoI CCATGG 2 cut(s) 96, 450
NdeII GATC 3 cut(s) 582, 626, 630
NlaIII CATG 6 cut(s) 100, 403, 454, 694, 770, 868
NlaIV GGNNCC 1 cut(s) 642
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 2 cut(s) 125, 814
NsbI TGCGCA 1 cut(s) 900
NspI RCATGY 1 cut(s) 868
PagI TCATGA 1 cut(s) 399
PceI AGGCCT 2 cut(s) 761, 985
PciI ACATGT 1 cut(s) 864
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 2 cut(s) 263, 720
PdmI GAANNNNTTC 2 cut(s) 513, 609
PfeI GAWTC 4 cut(s) 473, 554, 610, 1002
PinAI ACCGGT 1 cut(s) 63
PkrI GCNGC 7 cut(s) 213, 346, 373, 382, 385, 430, 1159
Ple19I CGATCG 2 cut(s) 629, 633
PleI GAGTC 2 cut(s) 109, 925
PpsI GAGTC 2 cut(s) 109, 925
PscI ACATGT 1 cut(s) 864
PsiI TTATAA 1 cut(s) 1089
PspN4I GGNNCC 1 cut(s) 642
PspPI GGNCC 2 cut(s) 274, 532
PvuI CGATCG 2 cut(s) 629, 633
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 42, 569, 885
SatI GCNGC 7 cut(s) 212, 345, 372, 381, 384, 429, 1158
Sau3AI GATC 3 cut(s) 582, 626, 630
Sau96I GGNCC 2 cut(s) 274, 532
SchI GAGTC 2 cut(s) 110, 926
ScrFI CCNGG 1 cut(s) 542
SfaNI GCATC 1 cut(s) 922
Sse9I AATT 7 cut(s) 7, 151, 527, 565, 662, 803, 903
SseBI AGGCCT 2 cut(s) 761, 985
SsiI CCGC 9 cut(s) 200, 212, 263, 345, 372, 384, 420, 429, 435
SspMI CTAG 1 cut(s) 332
StuI AGGCCT 2 cut(s) 761, 985
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 96, 450
TaaI ACNGT 2 cut(s) 125, 1047
TaqI TCGA 9 cut(s) 5, 30, 552, 629, 633, 702, 723, 920, 1163
TaqII GACCGA 1 cut(s) 617
TasI AATT 7 cut(s) 7, 151, 527, 565, 662, 803, 903
TauI GCSGC 5 cut(s) 214, 347, 374, 386, 431
TfiI GAWTC 4 cut(s) 473, 554, 610, 1002
Tru1I TTAA 3 cut(s) 42, 569, 885
Tru9I TTAA 3 cut(s) 42, 569, 885
TscAI CASTG 3 cut(s) 164, 468, 487
TseFI GTSAC 2 cut(s) 125, 814
TseI GCWGC 2 cut(s) 380, 1157
Tsp45I GTSAC 2 cut(s) 125, 814
TspDTI ATGAA 3 cut(s) 181, 388, 755
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 3 cut(s) 164, 468, 487
XapI RAATTY 3 cut(s) 7, 565, 903
XceI RCATGY 1 cut(s) 868
XmnI GAANNNNTTC 2 cut(s) 513, 609
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.