Rroxscaffold_6G00413500

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011182
Physical Location & Seq
Reverse (-)
35871872 .. 35872900
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413500.1

Sequence Viewer

Length: 1029 bp
ATGGAGTCCCTCGCTAAACTTAACCACCGTCACCAACCCCTCCACCTCTCAATCAATCCCAACCCTCCATCTTTCCCTAACCCCATTTCTTCCTTCCGGCCGCCGCGCCCCTCCTCACCTTCCAACTTCTCCTCCCTCAAAATCCGAGCCTCCTCCTCGGCGGACCCACCTCATCAAACTCCCCAAAACCCTAAACCCTCGTTCCTCCAAACCCTTTCCCCTCTCGCCTGCGCCGCCATAGCCGCCGCCGCATTCTTCACCATGCGATTCCACCCCACCAAGCCCGCCGTGGCCGCCACAATCGCGCCGGCCACGGTGGAGCCCAGAGAAGAAACCGCCGGGAAATTGCCGTATGAGGAGGCGGAGAGACAAATTGAGGAGCGATTGAGCCGTGACCCGAACGATGTCGAAGCGCTTCGGTCTCTGATGGAGGTGAAAATCAAAGCCCACAAGCTAACCGAAGCGGTTCAGGTGCTGGACCGGTTGATCGAGATCGAACCGGAAGACTATGAGTGGCAATTGCTGAAGGCCAATGTTCATACTTATTTGGGTGAGAATGACCTAGCTGCTAGTGAATTCGAGGACATTTTGGCCAAGGACCCTCTTCGGGTTGAGGCCTATCATGGGCTGGTGATGTCTGCGTCGCAGTCCGAAGAGAAATTGAAGCTCGTGTTGAAGAGGGTTGAGAAGGCAATGGAGGGCTGCAAGAAGCAGGGGAACACTTCCGATGTGAGGGACTTTAAGCTGTTGATTGCTCAAATTCGAGTAATGGAGGCCGAATACAAGGATGCATTGGAGCTCTATCAAGAGCTTGTGAGGGAGGAGCCGAGGGATTTCAGGCCGTATCTGTGTCAGGGCATCATATACACTCTGTTGAGGAAGAAGAATGAGGCTGAGAAACAATTCGCAACATTCAGGAAGCTTGTTCCCAAGAATCATCCTTACAAGGAGTACTTTGATGATAACATGTTTGCGACCAAGCTTTTTGGGGCAAAGGTGGACAGGGAGACAGCCGGGTCGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

342

Amino Acids

38.84

Weight (kDa)

6.54

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 118 - 178 1.8e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1015
AccII CGCG 2 cut(s) 106, 305
AcoI YGGCCR 4 cut(s) 98, 291, 309, 591
AcsI RAATTY 2 cut(s) 575, 759
AcuI CTGAAG 1 cut(s) 545
AfaI GTAC 1 cut(s) 953
AfeI AGCGCT 1 cut(s) 414
AfiI CCNNNNNNNGG 3 cut(s) 607, 624, 732
AflIII ACRYGT 2 cut(s) 966, 1023
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 2 cut(s) 664, 676
AluBI AGCT 8 cut(s) 454, 566, 667, 745, 799, 811, 922, 982
AluI AGCT 8 cut(s) 454, 566, 667, 745, 799, 811, 922, 982
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 3 cut(s) 361, 426, 1001
AlwNI CAGNNNCTG 1 cut(s) 475
Aor51HI AGCGCT 1 cut(s) 414
AoxI GGCC 8 cut(s) 98, 291, 309, 528, 591, 615, 774, 839
ApeKI GCWGC 2 cut(s) 566, 702
ApoI RAATTY 2 cut(s) 575, 759
AsiGI ACCGGT 1 cut(s) 480
Asp700I GAANNNNTTC 3 cut(s) 414, 465, 902
AspLEI GCGC 4 cut(s) 108, 233, 307, 415
AspS9I GGNCC 3 cut(s) 163, 478, 598
AsuC2I CCSGG 2 cut(s) 340, 1015
AsuHPI GGTGA 6 cut(s) 23, 108, 250, 445, 563, 643
AvaII GGWCC 3 cut(s) 163, 478, 598
BalI TGGCCA 1 cut(s) 593
BanII GRGCYC 2 cut(s) 324, 801
BauI CACGAG 1 cut(s) 668
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 2 cut(s) 553, 689
BccI CCATC 2 cut(s) 76, 421
BceAI ACGGC 4 cut(s) 272, 334, 375, 826
BcnI CCSGG 2 cut(s) 340, 1015
BcoDI GTCTC 3 cut(s) 361, 426, 1001
BfaI CTAG 2 cut(s) 563, 570
BfoI RGCGCY 1 cut(s) 416
BisI GCNGC 9 cut(s) 101, 104, 234, 243, 246, 249, 294, 567, 703
BlsI GCNGC 9 cut(s) 102, 105, 235, 244, 247, 250, 295, 568, 704
BmcAI AGTACT 1 cut(s) 953
Bme1390I CCNGG 2 cut(s) 340, 1015
Bme18I GGWCC 3 cut(s) 163, 478, 598
BmgT120I GGNCC 3 cut(s) 163, 478, 598
BmiI GGNNCC 4 cut(s) 165, 321, 600, 825
BmrFI CCNGG 2 cut(s) 340, 1015
BmsI GCATC 2 cut(s) 778, 867
BpiI GAAGAC 1 cut(s) 510
BpuMI CCSGG 2 cut(s) 340, 1015
BsaBI GATNNNNATC 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 5 cut(s) 156, 288, 312, 594, 827
BsaWI WCCGGW 2 cut(s) 480, 499
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 3 cut(s) 607, 624, 732
Bse118I RCCGGY 2 cut(s) 307, 480
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 491
BseDI CCNNGG 5 cut(s) 156, 288, 312, 594, 827
BseGI GGATG 2 cut(s) 793, 937
BseJI GATNNNNATC 1 cut(s) 491
BseLI CCNNNNNNNGG 3 cut(s) 607, 624, 732
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 885
BseRI GAGGAG 7 cut(s) 103, 121, 142, 145, 371, 392, 836
BseX3I CGGCCG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 553, 689
Bsh1236I CGCG 2 cut(s) 106, 305
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 8 cut(s) 100, 293, 311, 530, 593, 617, 776, 841
BshTI ACCGGT 1 cut(s) 480
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 801
BsiSI CCGG 6 cut(s) 97, 308, 339, 481, 500, 1014
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 3 cut(s) 607, 624, 732
BsmAI GTCTC 3 cut(s) 361, 426, 1001
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 8 cut(s) 100, 293, 311, 530, 593, 617, 776, 841
Bso31I GGTCTC 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 324, 801
Bsp143I GATC 2 cut(s) 486, 492
BspANI GGCC 8 cut(s) 100, 293, 311, 530, 593, 617, 776, 841
BspCNI CTCAG 1 cut(s) 886
BspFNI CGCG 2 cut(s) 106, 305
BspLI GGNNCC 4 cut(s) 165, 321, 600, 825
BspTNI GGTCTC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 307, 480
BssAI RCCGGY 2 cut(s) 307, 480
BssECI CCNNGG 5 cut(s) 156, 288, 312, 594, 827
BssMI GATC 2 cut(s) 486, 492
BssSI CACGAG 1 cut(s) 668
BssT1I CCWWGG 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 668
Bst4CI ACNGT 2 cut(s) 29, 316
Bst6I CTCTTC 3 cut(s) 609, 648, 671
BstC8I GCNNGC 3 cut(s) 229, 285, 309
BstDEI CTNAG 1 cut(s) 894
BstDSI CCRYGG 2 cut(s) 288, 312
BstF5I GGATG 2 cut(s) 793, 937
BstFNI CGCG 2 cut(s) 106, 305
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 4 cut(s) 108, 233, 307, 415
BstKTI GATC 2 cut(s) 489, 495
BstMAI GTCTC 3 cut(s) 361, 426, 1001
BstMBI GATC 2 cut(s) 486, 492
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 6 cut(s) 233, 239, 242, 248, 293, 302
BstNSI RCATGY 2 cut(s) 970, 1027
BstSCI CCNGG 2 cut(s) 338, 1013
BstUI CGCG 2 cut(s) 106, 305
BstV1I GCAGC 2 cut(s) 553, 689
BstV2I GAAGAC 1 cut(s) 510
BstZI CGGCCG 1 cut(s) 98
BsuRI GGCC 8 cut(s) 100, 293, 311, 530, 593, 617, 776, 841
BtgI CCRYGG 2 cut(s) 288, 312
BtsCI GGATG 2 cut(s) 793, 937
Cac8I GCNNGC 3 cut(s) 229, 285, 309
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 4 cut(s) 108, 233, 307, 415
Cfr10I RCCGGY 2 cut(s) 307, 480
Cfr13I GGNCC 3 cut(s) 163, 478, 598
CseI GACGC 1 cut(s) 630
Csp6I GTAC 1 cut(s) 952
CspAI ACCGGT 1 cut(s) 480
CviAII CATG 4 cut(s) 262, 623, 967, 1024
CviQI GTAC 1 cut(s) 952
DdeI CTNAG 1 cut(s) 894
DpnI GATC 2 cut(s) 488, 494
DpnII GATC 2 cut(s) 486, 492
DrdI GACNNNNNNGTC 1 cut(s) 1015
DseDI GACNNNNNNGTC 1 cut(s) 1015
EaeI YGGCCR 4 cut(s) 98, 291, 309, 591
EagI CGGCCG 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 609, 648, 671
EarI CTCTTC 3 cut(s) 609, 648, 671
EciI GGCGGA 2 cut(s) 176, 377
Ecl136II GAGCTC 1 cut(s) 799
EclXI CGGCCG 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 617
Eco24I GRGCYC 2 cut(s) 324, 801
Eco31I GGTCTC 1 cut(s) 426
Eco47I GGWCC 3 cut(s) 163, 478, 598
Eco47III AGCGCT 1 cut(s) 414
Eco52I CGGCCG 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 799
Eco57I CTGAAG 1 cut(s) 545
EcoICRI GAGCTC 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 575
EcoT14I CCWWGG 1 cut(s) 594
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 2 cut(s) 324, 801
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 4 cut(s) 265, 626, 970, 1027
FalI AAGNNNNNCTT 2 cut(s) 938, 970
FaqI GGGAC 1 cut(s) 749
FatI CATG 4 cut(s) 261, 622, 966, 1023
FauI CCCGC 1 cut(s) 292
Fnu4HI GCNGC 9 cut(s) 101, 104, 234, 243, 246, 249, 294, 567, 703
FokI GGATG 2 cut(s) 800, 924
FriOI GRGCYC 2 cut(s) 324, 801
Fsp4HI GCNGC 9 cut(s) 101, 104, 234, 243, 246, 249, 294, 567, 703
FspBI CTAG 2 cut(s) 563, 570
GlaI GCGC 4 cut(s) 107, 232, 306, 414
GluI GCNGC 9 cut(s) 101, 104, 234, 243, 246, 249, 294, 567, 703
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 8 cut(s) 100, 293, 311, 530, 593, 617, 776, 841
HapII CCGG 6 cut(s) 97, 308, 339, 481, 500, 1014
HgaI GACGC 1 cut(s) 630
HhaI GCGC 4 cut(s) 108, 233, 307, 415
Hin1II CATG 4 cut(s) 265, 626, 970, 1027
Hin6I GCGC 4 cut(s) 106, 231, 305, 413
HinP1I GCGC 4 cut(s) 106, 231, 305, 413
HindIII AAGCTT 2 cut(s) 920, 980
HinfI GANTC 3 cut(s) 5, 267, 934
HpaII CCGG 6 cut(s) 97, 308, 339, 481, 500, 1014
HphI GGTGA 6 cut(s) 23, 108, 250, 445, 563, 643
Hpy166II GTNNAC 1 cut(s) 1000
Hpy188I TCNGA 4 cut(s) 146, 426, 652, 727
Hpy188III TCNNGA 3 cut(s) 490, 806, 916
Hpy8I GTNNAC 1 cut(s) 1000
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 4 cut(s) 103, 129, 520, 682
HpyCH4III ACNGT 2 cut(s) 29, 316
HpyCH4V TGCA 2 cut(s) 705, 791
HpyF10VI GCNNNNNNNGC 6 cut(s) 233, 239, 242, 248, 293, 302
HpyF3I CTNAG 1 cut(s) 894
Hsp92II CATG 4 cut(s) 265, 626, 970, 1027
HspAI GCGC 4 cut(s) 106, 231, 305, 413
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 486, 492
LmnI GCTCC 4 cut(s) 319, 379, 796, 823
Lsp1109I GCAGC 2 cut(s) 553, 689
LweI GCATC 2 cut(s) 778, 867
MaeI CTAG 2 cut(s) 563, 570
MaeIII GTNAC 2 cut(s) 29, 392
MalI GATC 2 cut(s) 488, 494
MboI GATC 2 cut(s) 486, 492
MboII GAAGA 9 cut(s) 81, 247, 341, 515, 596, 665, 688, 892, 895
MfeI CAATTG 1 cut(s) 518
MhlI GDGCHC 2 cut(s) 324, 801
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 7 cut(s) 344, 372, 518, 575, 659, 759, 902
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 593
Mph1103I ATGCAT 1 cut(s) 793
MroNI GCCGGC 1 cut(s) 307
MroXI GAANNNNTTC 3 cut(s) 414, 465, 902
MscI TGGCCA 1 cut(s) 593
MseI TTAA 2 cut(s) 21, 741
Msp20I TGGCCA 1 cut(s) 593
MspI CCGG 6 cut(s) 97, 308, 339, 481, 500, 1014
MspR9I CCNGG 2 cut(s) 340, 1015
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 251
MvnI CGCG 2 cut(s) 106, 305
MwoI GCNNNNNNNGC 6 cut(s) 233, 239, 242, 248, 293, 302
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 2 cut(s) 340, 1015
NdeII GATC 2 cut(s) 486, 492
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 4 cut(s) 265, 626, 970, 1027
NlaIV GGNNCC 4 cut(s) 165, 321, 600, 825
NmeAIII GCCGAG 2 cut(s) 137, 852
NmuCI GTSAC 2 cut(s) 29, 392
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 2 cut(s) 970, 1027
PceI AGGCCT 1 cut(s) 617
PciI ACATGT 2 cut(s) 966, 1023
PctI GAATGC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 309
PdmI GAANNNNTTC 3 cut(s) 414, 465, 902
PfeI GAWTC 2 cut(s) 267, 934
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 9 cut(s) 102, 105, 235, 244, 247, 250, 295, 568, 704
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 598
PscI ACATGT 2 cut(s) 966, 1023
Psp124BI GAGCTC 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 598
PspN4I GGNNCC 4 cut(s) 165, 321, 600, 825
PspPI GGNCC 3 cut(s) 163, 478, 598
PspPPI RGGWCCY 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 475
RsaI GTAC 1 cut(s) 953
RsaNI GTAC 1 cut(s) 952
SacI GAGCTC 1 cut(s) 801
SaqAI TTAA 2 cut(s) 21, 741
SatI GCNGC 9 cut(s) 101, 104, 234, 243, 246, 249, 294, 567, 703
Sau3AI GATC 2 cut(s) 486, 492
Sau96I GGNCC 3 cut(s) 163, 478, 598
ScaI AGTACT 1 cut(s) 953
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 340, 1015
SduI GDGCHC 2 cut(s) 324, 801
SfaNI GCATC 2 cut(s) 778, 867
SinI GGWCC 3 cut(s) 163, 478, 598
Sse9I AATT 7 cut(s) 344, 372, 518, 575, 659, 759, 902
SseBI AGGCCT 1 cut(s) 617
SspMI CTAG 2 cut(s) 563, 570
SstI GAGCTC 1 cut(s) 801
StuI AGGCCT 1 cut(s) 617
StyD4I CCNGG 2 cut(s) 338, 1013
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 2 cut(s) 29, 316
TaqI TCGA 6 cut(s) 408, 489, 495, 579, 763, 1019
TaqII GACCGA 1 cut(s) 408
TasI AATT 7 cut(s) 344, 372, 518, 575, 659, 759, 902
TatI WGTACW 1 cut(s) 951
TauI GCSGC 7 cut(s) 103, 106, 236, 245, 248, 251, 296
TfiI GAWTC 2 cut(s) 267, 934
Tru1I TTAA 2 cut(s) 21, 741
Tru9I TTAA 2 cut(s) 21, 741
TseFI GTSAC 2 cut(s) 29, 392
TseI GCWGC 2 cut(s) 566, 702
Tsp45I GTSAC 2 cut(s) 29, 392
TspDTI ATGAA 1 cut(s) 527
VpaK11BI GGWCC 3 cut(s) 163, 478, 598
XapI RAATTY 2 cut(s) 575, 759
XceI RCATGY 2 cut(s) 970, 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XmnI GAANNNNTTC 3 cut(s) 414, 465, 902
XspI CTAG 2 cut(s) 563, 570
ZrmI AGTACT 1 cut(s) 953
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.