FvH4_6g14610

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011182
Physical Location & Seq
Forward (+)
8978130 .. 8979749
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14610.t1

Sequence Viewer

Length: 996 bp
ATGGAGTCCCTCTCTAAACTCAACCTCCGCCACCAACCCCTCCACCTCTCCATCAATCCCCACCGTCCATCTTCCCTCATCCCCATTTCCTCCTTCCGCCCCCTTCGCTCCTCCTCCTTCTCCTCCCTCAAAATCCGCGCCTCCTCCGCGGACCCACCTCACCAAGCCCCCCAAAACCCTAAACCCTCCTTCCTCCAAACCCTATCCCCTCTCGCCTGCGCCGCCGTCGCCGCCGCCGCGTTCTTCACCATGCGCTTCCACCCCACCAAACCCGCCTTCGCCGCCCCAACCTCCACGGTGGAGCCCGCGAAGGTGACGTATGAGGATGAGGAGAGACAAATTGAGGAGCAACTGAGCCGTGACCCGAACGACGTCGAGGCGCTGAGGTCTCTGATGGAGGTGAGAATCAAAGCCCACAAGCTGACCGAGGCGGTTCAGGTGCTGGACCGGTTGATCGAGGTCGAACCGGAAGACTTTGAGTGGCAGCTGTTGAAGGCCAATGTTCATACTTACATGGGTGAGTATGATTTAGCTACTAGTGAATTTGAAGACATTTTGGCCAAGGACCCTCTTCGAGTTGAGGCCTATCATGGGCTGGTGATGTCTGCGTCGCAATCGGAAGAGAAGCTGGAGCTTGTGTTGAAGAGGGTTGAGAAGGCAATGGAGGCGTGCAAGAAGCAGGGGAACACTTCGGATGTGAGGGACTTTAAGCTGTTGATTGCGCAAATTCGGGTGATGGAGGCTGAGTACAAGGATGCATTGGAGCTTTATCAAGAGCTTGTGAAGGAAGAGCCCAGGGATTTCAGGCCGTATCTGTGTCAGGGAATTATATACACTCTGTTGAGGAAGAAGAATGAGGCTGAGAAACATTTTGCGACGTTCAGGAAGCTTGTTCCCAAGAATCATCCTTACAAGGAGTACTTTGATGATAACATGTTTGCGACCAAGCTTTTTGGGGCAAAGGTGGAGAGGGAGGCGGCTGGATCGAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

332

Amino Acids

37.8

Weight (kDa)

6.24

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 115 - 167 4.2e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
Acc16I TGCGCA 1 cut(s) 723
AccII CGCG 4 cut(s) 138, 149, 239, 308
AclWI GGATC 1 cut(s) 991
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 2 cut(s) 542, 726
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 749, 920
AfiI CCNNNNNNNGG 1 cut(s) 591
AflIII ACRYGT 1 cut(s) 933
AgeI ACCGGT 1 cut(s) 447
AgsI TTSAA 3 cut(s) 493, 548, 643
AhlI ACTAGT 1 cut(s) 536
AjnI CCWGG 1 cut(s) 794
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
Alw26I GTCTC 2 cut(s) 328, 393
AlwI GGATC 1 cut(s) 991
AlwNI CAGNNNCTG 1 cut(s) 442
AoxI GGCC 4 cut(s) 495, 558, 582, 806
ApeKI GCWGC 1 cut(s) 484
ApoI RAATTY 2 cut(s) 542, 726
AsiGI ACCGGT 1 cut(s) 447
AspLEI GCGC 5 cut(s) 140, 221, 255, 382, 724
AspS9I GGNCC 3 cut(s) 151, 445, 565
AsuHPI GGTGA 7 cut(s) 152, 238, 325, 412, 530, 610, 745
AvaII GGWCC 3 cut(s) 151, 445, 565
BalI TGGCCA 1 cut(s) 560
BanII GRGCYC 2 cut(s) 306, 795
BbsI GAAGAC 2 cut(s) 477, 555
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 496
BccI CCATC 4 cut(s) 59, 76, 388, 730
BceAI ACGGC 3 cut(s) 209, 342, 793
BciT130I CCWGG 1 cut(s) 796
BcoDI GTCTC 2 cut(s) 328, 393
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 1 cut(s) 537
BfoI RGCGCY 1 cut(s) 383
BisI GCNGC 7 cut(s) 222, 231, 234, 237, 282, 485, 978
BlsI GCNGC 7 cut(s) 223, 232, 235, 238, 283, 486, 979
BmcAI AGTACT 1 cut(s) 920
Bme1390I CCNGG 1 cut(s) 796
Bme18I GGWCC 3 cut(s) 151, 445, 565
BmgT120I GGNCC 3 cut(s) 151, 445, 565
BmiI GGNNCC 3 cut(s) 153, 303, 567
BmrFI CCNGG 1 cut(s) 796
BmsI GCATC 1 cut(s) 745
BpiI GAAGAC 2 cut(s) 477, 555
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 650
Bpu10I CCTNAGC 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 6 cut(s) 147, 294, 426, 561, 794, 795
BsaWI WCCGGW 2 cut(s) 447, 466
BsaXI ACNNNNNCTCC 6 cut(s) 9, 39, 623, 653, 731, 761
Bsc4I CCNNNNNNNGG 1 cut(s) 591
Bse118I RCCGGY 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 1 cut(s) 796
BseDI CCNNGG 6 cut(s) 147, 294, 426, 561, 794, 795
BseGI GGATG 5 cut(s) 78, 331, 700, 760, 904
BseLI CCNNNNNNNGG 1 cut(s) 591
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 4 cut(s) 344, 374, 735, 852
BseRI GAGGAG 6 cut(s) 100, 103, 112, 133, 344, 359
BseXI GCAGC 1 cut(s) 496
Bsh1236I CGCG 4 cut(s) 138, 149, 239, 308
BshFI GGCC 4 cut(s) 497, 560, 584, 808
BshTI ACCGGT 1 cut(s) 447
BsiSI CCGG 2 cut(s) 448, 467
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 1 cut(s) 591
BsmAI GTCTC 2 cut(s) 328, 393
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 4 cut(s) 497, 560, 584, 808
Bso31I GGTCTC 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 306, 795
Bsp143I GATC 2 cut(s) 453, 983
BspANI GGCC 4 cut(s) 497, 560, 584, 808
BspCNI CTCAG 4 cut(s) 345, 375, 736, 853
BspFNI CGCG 4 cut(s) 138, 149, 239, 308
BspLI GGNNCC 3 cut(s) 153, 303, 567
BspPI GGATC 1 cut(s) 991
BspQI GCTCTTC 1 cut(s) 783
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 447
BssAI RCCGGY 1 cut(s) 447
BssECI CCNNGG 6 cut(s) 147, 294, 426, 561, 794, 795
BssMI GATC 2 cut(s) 453, 983
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 796
Bst4CI ACNGT 2 cut(s) 65, 298
Bst6I CTCTTC 4 cut(s) 576, 615, 638, 783
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 217, 306, 670
BstDEI CTNAG 4 cut(s) 353, 383, 744, 861
BstDSI CCRYGG 2 cut(s) 147, 294
BstF5I GGATG 5 cut(s) 78, 331, 700, 760, 904
BstFNI CGCG 4 cut(s) 138, 149, 239, 308
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 5 cut(s) 140, 221, 255, 382, 724
BstKTI GATC 2 cut(s) 456, 986
BstMAI GTCTC 2 cut(s) 328, 393
BstMBI GATC 2 cut(s) 453, 983
BstMWI GCNNNNNNNGC 8 cut(s) 105, 146, 221, 227, 230, 236, 281, 665
BstNI CCWGG 1 cut(s) 796
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 1 cut(s) 794
BstUI CGCG 4 cut(s) 138, 149, 239, 308
BstV1I GCAGC 1 cut(s) 496
BstV2I GAAGAC 2 cut(s) 477, 555
BsuRI GGCC 4 cut(s) 497, 560, 584, 808
BtgI CCRYGG 2 cut(s) 147, 294
BtsCI GGATG 5 cut(s) 78, 331, 700, 760, 904
Cac8I GCNNGC 3 cut(s) 217, 306, 670
CaiI CAGNNNCTG 1 cut(s) 442
CfoI GCGC 5 cut(s) 140, 221, 255, 382, 724
Cfr10I RCCGGY 1 cut(s) 447
Cfr13I GGNCC 3 cut(s) 151, 445, 565
Cfr42I CCGCGG 1 cut(s) 150
CseI GACGC 1 cut(s) 597
Csp6I GTAC 2 cut(s) 748, 919
CspAI ACCGGT 1 cut(s) 447
CviAII CATG 4 cut(s) 250, 514, 590, 934
CviQI GTAC 2 cut(s) 748, 919
DdeI CTNAG 4 cut(s) 353, 383, 744, 861
DpnI GATC 2 cut(s) 455, 985
DpnII GATC 2 cut(s) 453, 983
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 4 cut(s) 576, 615, 638, 783
EarI CTCTTC 4 cut(s) 576, 615, 638, 783
EciI GGCGGA 2 cut(s) 17, 86
Eco130I CCWWGG 1 cut(s) 561
Eco147I AGGCCT 1 cut(s) 584
Eco24I GRGCYC 2 cut(s) 306, 795
Eco31I GGTCTC 1 cut(s) 393
Eco47I GGWCC 3 cut(s) 151, 445, 565
EcoO109I RGGNCCY 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 794
EcoT14I CCWWGG 1 cut(s) 561
EcoT22I ATGCAT 1 cut(s) 760
EcoT38I GRGCYC 2 cut(s) 306, 795
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 4 cut(s) 253, 517, 593, 937
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 1 cut(s) 716
FatI CATG 4 cut(s) 249, 513, 589, 933
FauI CCCGC 2 cut(s) 280, 313
Fnu4HI GCNGC 7 cut(s) 222, 231, 234, 237, 282, 485, 978
FokI GGATG 5 cut(s) 65, 338, 707, 767, 891
FriOI GRGCYC 2 cut(s) 306, 795
Fsp4HI GCNGC 7 cut(s) 222, 231, 234, 237, 282, 485, 978
FspBI CTAG 1 cut(s) 537
FspI TGCGCA 1 cut(s) 723
GlaI GCGC 5 cut(s) 139, 220, 254, 381, 723
GluI GCNGC 7 cut(s) 222, 231, 234, 237, 282, 485, 978
GsuI CTGGAG 1 cut(s) 650
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 4 cut(s) 497, 560, 584, 808
HapII CCGG 2 cut(s) 448, 467
HgaI GACGC 1 cut(s) 597
HhaI GCGC 5 cut(s) 140, 221, 255, 382, 724
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 4 cut(s) 253, 517, 593, 937
Hin6I GCGC 5 cut(s) 138, 219, 253, 380, 722
HinP1I GCGC 5 cut(s) 138, 219, 253, 380, 722
HindIII AAGCTT 2 cut(s) 887, 947
HinfI GANTC 3 cut(s) 5, 405, 901
HpaII CCGG 2 cut(s) 448, 467
HphI GGTGA 7 cut(s) 152, 238, 325, 412, 530, 610, 745
Hpy188I TCNGA 3 cut(s) 393, 619, 694
Hpy188III TCNNGA 2 cut(s) 773, 883
Hpy99I CGWCG 5 cut(s) 230, 374, 377, 613, 880
HpyAV CCTTC 9 cut(s) 103, 113, 127, 199, 286, 304, 487, 649, 778
HpyCH4III ACNGT 2 cut(s) 65, 298
HpyCH4IV ACGT 3 cut(s) 317, 372, 878
HpyCH4V TGCA 2 cut(s) 672, 758
HpyF10VI GCNNNNNNNGC 8 cut(s) 105, 146, 221, 227, 230, 236, 281, 665
HpyF3I CTNAG 4 cut(s) 353, 383, 744, 861
HpySE526I ACGT 3 cut(s) 317, 372, 878
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 4 cut(s) 253, 517, 593, 937
HspAI GCGC 5 cut(s) 138, 219, 253, 380, 722
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 2 cut(s) 453, 983
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 5 cut(s) 113, 301, 346, 631, 763
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 1 cut(s) 745
MaeI CTAG 1 cut(s) 537
MaeII ACGT 3 cut(s) 317, 372, 878
MaeIII GTNAC 2 cut(s) 313, 359
MalI GATC 2 cut(s) 455, 985
MboI GATC 2 cut(s) 453, 983
MhlI GDGCHC 2 cut(s) 306, 795
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 4 cut(s) 339, 542, 726, 825
MluNI TGGCCA 1 cut(s) 560
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 560
Mph1103I ATGCAT 1 cut(s) 760
MscI TGGCCA 1 cut(s) 560
MseI TTAA 1 cut(s) 708
Msp20I TGGCCA 1 cut(s) 560
MspA1I CMGCKG 2 cut(s) 149, 487
MspI CCGG 2 cut(s) 448, 467
MspR9I CCNGG 1 cut(s) 796
MvaI CCWGG 1 cut(s) 796
MvnI CGCG 4 cut(s) 138, 149, 239, 308
MwoI GCNNNNNNNGC 8 cut(s) 105, 146, 221, 227, 230, 236, 281, 665
NdeII GATC 2 cut(s) 453, 983
NlaIII CATG 4 cut(s) 253, 517, 593, 937
NlaIV GGNNCC 3 cut(s) 153, 303, 567
NmuCI GTSAC 2 cut(s) 313, 359
NsbI TGCGCA 1 cut(s) 723
NsiI ATGCAT 1 cut(s) 760
NspI RCATGY 1 cut(s) 937
PasI CCCWGGG 1 cut(s) 795
PceI AGGCCT 1 cut(s) 584
PciI ACATGT 1 cut(s) 933
PciSI GCTCTTC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 405, 901
PinAI ACCGGT 1 cut(s) 447
PkrI GCNGC 7 cut(s) 223, 232, 235, 238, 283, 486, 979
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 565
PscI ACATGT 1 cut(s) 933
Psp5II RGGWCCY 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 794
PspGI CCWGG 1 cut(s) 794
PspN4I GGNNCC 3 cut(s) 153, 303, 567
PspPI GGNCC 3 cut(s) 151, 445, 565
PspPPI RGGWCCY 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 442
PvuII CAGCTG 1 cut(s) 487
RsaI GTAC 2 cut(s) 749, 920
RsaNI GTAC 2 cut(s) 748, 919
SacII CCGCGG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 708
SatI GCNGC 7 cut(s) 222, 231, 234, 237, 282, 485, 978
Sau3AI GATC 2 cut(s) 453, 983
Sau96I GGNCC 3 cut(s) 151, 445, 565
ScaI AGTACT 1 cut(s) 920
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 796
SduI GDGCHC 2 cut(s) 306, 795
SfaNI GCATC 1 cut(s) 745
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 3 cut(s) 151, 445, 565
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 4 cut(s) 339, 542, 726, 825
SseBI AGGCCT 1 cut(s) 584
SspMI CTAG 1 cut(s) 537
StuI AGGCCT 1 cut(s) 584
StyD4I CCNGG 1 cut(s) 794
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 2 cut(s) 65, 298
TaiI ACGT 3 cut(s) 320, 375, 881
TaqI TCGA 5 cut(s) 375, 456, 462, 574, 986
TaqII GACCGA 1 cut(s) 440
TasI AATT 4 cut(s) 339, 542, 726, 825
TatI WGTACW 2 cut(s) 747, 918
TauI GCSGC 6 cut(s) 224, 233, 236, 239, 284, 980
TfiI GAWTC 2 cut(s) 405, 901
Tru1I TTAA 1 cut(s) 708
Tru9I TTAA 1 cut(s) 708
TseFI GTSAC 2 cut(s) 313, 359
TseI GCWGC 1 cut(s) 484
Tsp45I GTSAC 2 cut(s) 313, 359
TspDTI ATGAA 1 cut(s) 494
VpaK11BI GGWCC 3 cut(s) 151, 445, 565
XapI RAATTY 2 cut(s) 542, 726
XceI RCATGY 1 cut(s) 937
XspI CTAG 1 cut(s) 537
ZraI GACGTC 1 cut(s) 373
ZrmI AGTACT 1 cut(s) 920
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.