Prupe.6G248600_v2.0.a1

Protein SLOW GREEN 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011182
Physical Location & Seq
Reverse (-)
24442138 .. 24443522
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G248600.1

Sequence Viewer

Length: 1074 bp
ATGGAGTCTCTCGCTAAACTTCAACACCGTCACCAACCCTTTAACCTCTCACTCAATCCCCACCGTCCATCATTCCCAAAACCAATTTCTTCCTTCAAACCCCCACGCTCATCACCGCCTTTCAACTTCACTTCCCTCACTATCAGAGCCTCGTCCTCATCCTCTTCACCATCCTCCGCCGACCCACCTCACCAAAACCCCAAAAACCCTAAACCCTCACCCTTCCAAACCCTAGCCCCTCTCGCCTCCCCTCTTCTCAAGACCACTTGCGCCGCCATAGCAGCAGCCGCATTCTTCTTCATGCGCTTCCACAACAGAACCGCCGTGGCCTCCCCCACAGGCGCGCCTTCTACTGTGGAGCCCAGAGAAGAAGTTTCGTCCACTGACAGCGTTACGGTCGAAGAGAAAGAGAGGCTCATTGAAGAGCAATTGAGCCAAAACCCCGACGATGTCGAAGCGCTGAGGTCATTGATGGAGGTTAGGATCAAAGCCCACAAATTGACCGCAGCGATTCAGGTGCTGGACCGCTTGATCGAGCTCGAACCTGAAGACTATGAGTGGCAATTGCTGAAAGCCAATGTTCATAGCTACATGGGTGAGTTTGAACTCGCTACCAGTGAGTTCGAGGAGATTTTGGCCAAAGACCCTTTGCGAGTTGAGGCCTATCATGGTCTTGTGATGTCTGCTTCGCAATCCCCCGAGAAATTGGAGAATGTGGTGACGAGAGTGGAAAAGGCAATGGAGGGTTGCAAGAAGCAGGGGAACAAGTCGGATGTGAGGGATTTTAAGCTGTTAATTGCCCAAATTCGCGTGATGGAGTCAAATTATTCGGAAGCTTTGAAGCTTTATCAAGAGCTTGTGAGGGAAGAACCGAGAGATTTCAGGCCTTATCTGTGTCAAGGAATCATTTATACTGTGTTGAGGAAGAATAAAGAGGCTGAGAAACAGTTTGAAAAGTTCAGAAAGCTTGTTCCCAAGAACCACCCTTATAAAGAGTATTTCGATGACAATATGTTTGCCACAAAGCTTTTCGGGCAGAAGGTGGAGAGGGAGAGAGCAGAGTCGAACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

358

Amino Acids

40.69

Weight (kDa)

7.14

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37400 AT3G53560 AT3G53560
fragaria_vesca FvH4_6g14610
malus_domestica MD12G1136200.v1.1
prunus_persica Prupe.6G248600_v2.0.a1
pyrus_communis pycom04g10840 pycom12g13030
rosa_chinensis RchiOBHm_Chr3g0467701
rosa_laevigata RLG00000024479
rosa_multiflora Rmu_co8106558.1_g000001 Rmu_sc0001793.1_g000008 Rmu_sc0013459.1_g000004
rosa_roxburghii Rroxscaffold_6G00413500
rosa_rugosa Rorug03G0089100
rosa_samantha Rh3AG137600 Rh3BG158900 Rh3CG158800 Rh3DG159400
rosa_wichuraiana Rw3G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 990
AccII CGCG 2 cut(s) 344, 810
AciI CCGC 7 cut(s) 116, 177, 273, 288, 321, 504, 526
AclWI GGATC 1 cut(s) 491
AcoI YGGCCR 1 cut(s) 636
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 1 cut(s) 567
AfeI AGCGCT 1 cut(s) 459
AgsI TTSAA 7 cut(s) 23, 97, 124, 422, 605, 841, 953
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 8 cut(s) 538, 588, 790, 836, 844, 856, 967, 1027
AluI AGCT 8 cut(s) 538, 588, 790, 836, 844, 856, 967, 1027
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 1 cut(s) 491
AlwNI CAGNNNCTG 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 698
Aor51HI AGCGCT 1 cut(s) 459
AoxI GGCC 4 cut(s) 327, 636, 660, 884
ApeKI GCWGC 3 cut(s) 281, 284, 506
ApoI RAATTY 1 cut(s) 804
ArsI GACNNNNNNTTYG 2 cut(s) 998, 1030
AscI GGCGCGCC 1 cut(s) 342
AspLEI GCGC 5 cut(s) 272, 306, 344, 346, 460
AspS9I GGNCC 1 cut(s) 523
AsuHPI GGTGA 7 cut(s) 23, 105, 159, 182, 210, 608, 730
AvaI CYCGRG 1 cut(s) 698
AvaII GGWCC 1 cut(s) 523
BalI TGGCCA 1 cut(s) 638
BanII GRGCYC 2 cut(s) 363, 540
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 540
BbvCI CCTCAGC 1 cut(s) 461
BbvI GCAGC 3 cut(s) 293, 296, 518
BccI CCATC 4 cut(s) 76, 178, 466, 808
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 461
BisI GCNGC 5 cut(s) 273, 282, 285, 288, 507
BlsI GCNGC 5 cut(s) 274, 283, 286, 289, 508
Bme18I GGWCC 1 cut(s) 523
BmeT110I CYCGRG 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 615
Bse3DI GCAATG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 3 cut(s) 158, 170, 778
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 2 cut(s) 452, 930
BseNI ACTGG 1 cut(s) 615
BsePI GCGCGC 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 641
BseXI GCAGC 3 cut(s) 293, 296, 518
Bsh1236I CGCG 2 cut(s) 344, 810
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 4 cut(s) 329, 638, 662, 886
BsiEI CGRYCG 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 698
BsmAI GTCTC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 4 cut(s) 329, 638, 662, 886
BsoBI CYCGRG 1 cut(s) 698
Bsp1286I GDGCHC 2 cut(s) 363, 540
Bsp143I GATC 2 cut(s) 483, 531
BspACI CCGC 7 cut(s) 116, 177, 273, 288, 321, 504, 526
BspANI GGCC 4 cut(s) 329, 638, 662, 886
BspCNI CTCAG 2 cut(s) 453, 931
BspFNI CGCG 2 cut(s) 344, 810
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 491
BspQI GCTCTTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 744
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 1 cut(s) 324
BssHII GCGCGC 1 cut(s) 342
BssMI GATC 2 cut(s) 483, 531
Bst4CI ACNGT 6 cut(s) 29, 65, 355, 397, 916, 948
Bst6I CTCTTC 4 cut(s) 169, 258, 396, 417
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 461, 939
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 158, 170, 778
BstFNI CGCG 2 cut(s) 344, 810
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 5 cut(s) 272, 306, 344, 346, 460
BstKTI GATC 2 cut(s) 486, 534
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 2 cut(s) 483, 531
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 5 cut(s) 242, 278, 281, 287, 1033
BstUI CGCG 2 cut(s) 344, 810
BstV1I GCAGC 3 cut(s) 293, 296, 518
BstV2I GAAGAC 1 cut(s) 555
BsuRI GGCC 4 cut(s) 329, 638, 662, 886
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 3 cut(s) 158, 170, 778
BtsIMutI CAGTG 2 cut(s) 381, 622
Cac8I GCNNGC 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 520
CfoI GCGC 5 cut(s) 272, 306, 344, 346, 460
Cfr13I GGNCC 1 cut(s) 523
CviAII CATG 3 cut(s) 301, 592, 668
DdeI CTNAG 2 cut(s) 461, 939
DpnI GATC 2 cut(s) 485, 533
DpnII GATC 2 cut(s) 483, 531
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 4 cut(s) 169, 258, 396, 417
EarI CTCTTC 4 cut(s) 169, 258, 396, 417
EciI GGCGGA 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 538
Eco147I AGGCCT 2 cut(s) 662, 886
Eco24I GRGCYC 2 cut(s) 363, 540
Eco47I GGWCC 1 cut(s) 523
Eco47III AGCGCT 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 698
EcoICRI GAGCTC 1 cut(s) 538
EcoT38I GRGCYC 2 cut(s) 363, 540
FaeI CATG 3 cut(s) 304, 595, 671
FaiI YATR 9 cut(s) 278, 302, 555, 585, 593, 669, 912, 990, 1013
FatI CATG 3 cut(s) 300, 591, 667
Fnu4HI GCNGC 5 cut(s) 273, 282, 285, 288, 507
FokI GGATG 3 cut(s) 145, 157, 785
FriOI GRGCYC 2 cut(s) 363, 540
Fsp4HI GCNGC 5 cut(s) 273, 282, 285, 288, 507
FspBI CTAG 1 cut(s) 233
GlaI GCGC 5 cut(s) 271, 305, 343, 345, 459
GluI GCNGC 5 cut(s) 273, 282, 285, 288, 507
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 4 cut(s) 329, 638, 662, 886
HhaI GCGC 5 cut(s) 272, 306, 344, 346, 460
Hin1II CATG 3 cut(s) 304, 595, 671
Hin6I GCGC 5 cut(s) 270, 304, 342, 344, 458
HinP1I GCGC 5 cut(s) 270, 304, 342, 344, 458
HindIII AAGCTT 4 cut(s) 834, 842, 965, 1025
HinfI GANTC 5 cut(s) 5, 511, 818, 903, 1061
HphI GGTGA 7 cut(s) 23, 105, 159, 182, 210, 608, 730
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 4 cut(s) 146, 772, 832, 962
Hpy188III TCNNGA 2 cut(s) 259, 851
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 103, 232, 357, 1033
HpyCH4III ACNGT 6 cut(s) 29, 65, 355, 397, 916, 948
HpyCH4V TGCA 1 cut(s) 750
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 278, 281, 287, 1033
HpyF3I CTNAG 2 cut(s) 461, 939
Hsp92II CATG 3 cut(s) 304, 595, 671
HspAI GCGC 5 cut(s) 270, 304, 342, 344, 458
Kzo9I GATC 2 cut(s) 483, 531
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 8 cut(s) 324, 376, 500, 506, 558, 628, 743, 868
Lsp1109I GCAGC 3 cut(s) 293, 296, 518
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 3 cut(s) 29, 391, 718
MalI GATC 2 cut(s) 485, 533
MboI GATC 2 cut(s) 483, 531
MfeI CAATTG 2 cut(s) 428, 563
MhlI GDGCHC 2 cut(s) 363, 540
MlsI TGGCCA 1 cut(s) 638
MluCI AATT 8 cut(s) 84, 428, 497, 563, 704, 795, 804, 823
MluNI TGGCCA 1 cut(s) 638
MlyI GAGTC 3 cut(s) 14, 827, 1070
MmeI TCCRAC 1 cut(s) 750
Mox20I TGGCCA 1 cut(s) 638
MscI TGGCCA 1 cut(s) 638
MseI TTAA 3 cut(s) 42, 786, 794
Msp20I TGGCCA 1 cut(s) 638
MunI CAATTG 2 cut(s) 428, 563
Mva1269I GAATGC 1 cut(s) 290
MvnI CGCG 2 cut(s) 344, 810
MwoI GCNNNNNNNGC 5 cut(s) 242, 278, 281, 287, 1033
NdeII GATC 2 cut(s) 483, 531
NlaIII CATG 3 cut(s) 304, 595, 671
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 29, 718
PalAI GGCGCGCC 1 cut(s) 342
PauI GCGCGC 1 cut(s) 342
PceI AGGCCT 2 cut(s) 662, 886
PciSI GCTCTTC 1 cut(s) 417
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 511, 903
PflFI GACNNNGTC 1 cut(s) 449
PkrI GCNGC 5 cut(s) 274, 283, 286, 289, 508
PleI GAGTC 3 cut(s) 13, 826, 1069
PpsI GAGTC 3 cut(s) 13, 826, 1069
PsiI TTATAA 1 cut(s) 990
Psp124BI GAGCTC 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 520
PsyI GACNNNGTC 1 cut(s) 449
PteI GCGCGC 1 cut(s) 342
SacI GAGCTC 1 cut(s) 540
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 3 cut(s) 42, 786, 794
SatI GCNGC 5 cut(s) 273, 282, 285, 288, 507
Sau3AI GATC 2 cut(s) 483, 531
Sau96I GGNCC 1 cut(s) 523
SchI GAGTC 3 cut(s) 14, 827, 1070
SduI GDGCHC 2 cut(s) 363, 540
SgsI GGCGCGCC 1 cut(s) 342
SinI GGWCC 1 cut(s) 523
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 8 cut(s) 84, 428, 497, 563, 704, 795, 804, 823
SseBI AGGCCT 2 cut(s) 662, 886
SsiI CCGC 7 cut(s) 116, 177, 273, 288, 321, 504, 526
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 540
StuI AGGCCT 2 cut(s) 662, 886
TaaI ACNGT 6 cut(s) 29, 65, 355, 397, 916, 948
TaqI TCGA 7 cut(s) 399, 453, 534, 540, 624, 1002, 1064
TasI AATT 8 cut(s) 84, 428, 497, 563, 704, 795, 804, 823
TauI GCSGC 2 cut(s) 275, 290
TfiI GAWTC 2 cut(s) 511, 903
Tru1I TTAA 3 cut(s) 42, 786, 794
Tru9I TTAA 3 cut(s) 42, 786, 794
TscAI CASTG 2 cut(s) 388, 622
TseFI GTSAC 2 cut(s) 29, 718
TseI GCWGC 3 cut(s) 281, 284, 506
Tsp45I GTSAC 2 cut(s) 29, 718
TspDTI ATGAA 2 cut(s) 289, 572
TspRI CASTG 2 cut(s) 388, 622
Tth111I GACNNNGTC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 523
XapI RAATTY 1 cut(s) 804
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.