Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005476

Physical Location & Seq

Genomic Coordinates Forward (+)

15980848 .. 15981612

Gene Structure 765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGCATTACCTTCCTCACGGTTATCATCTTCTCACTCTGAAACTGCCGGTGTCTCTCTCTCTTGCTTCACTCATCAATTCTCTCTCTCCACTTCCTCATCCAGCTCAATTCCACTCGTGTACTGTGGCAGAGGTGACCGGAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCAAGAAACAAGAGCAAAGGAAGAGGACCGGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAGATAAGTTTGAGAACGACGAGAAGATCAAAATCGATATCGACGAGTCTCTCTTCTCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

118

Amino Acids

12.78

Weight (kDa)

10.17

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPS31	PF17067	1 - 99	6.1e-67	Ribosomal protein S31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38140
fragaria_vesca	FvH4_6g11721 FvH4_6g11730
malus_domestica	MD04G1149600.v1.1 MD12G1164000.v1.1 MD12G1164100.v1.1
prunus_persica	Prupe.6G274500_v2.0.a1 Prupe.6G274500_v2.0.a1 Prupe.6G274600_v2.0.a1
pyrus_communis	pycom04g13510 pycom04g13520 pycom12g15680
rosa_chinensis	RchiOBHm_Chr3g0463501 RchiOBHm_Chr3g0463511
rosa_laevigata	RLG00000024782
rosa_multiflora	Rmu_sc0000923.1_g000021
rosa_roxburghii	Rroxscaffold_6G00416500 Rroxscaffold_6G00416510
rosa_rugosa	Rorug03G0065200 Rorug03G0065300
rosa_samantha	Rh3AG122400 Rh3AG122500 Rh3BG127100 Rh3BG127200 Rh3CG129000 Rh3CG129100 Rh3DG127900 Rh3DG128000
rosa_wichuraiana	Rw0G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	31
AciI	CCGC	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	161, 267
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	3 cut(s)	23, 144, 188
AluI	AGCT	3 cut(s)	23, 144, 188
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	2 cut(s)	97, 345
AoxI	GGCC	1 cut(s)	227
AsiGI	ACCGGT	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	28, 185
AvaII	GGWCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	97, 345
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	287
BsaWI	WCCGGW	3 cut(s)	177, 256, 268
Bse118I	RCCGGY	2 cut(s)	86, 268
Bse8I	GATNNNNATC	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	137
BseJI	GATNNNNATC	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	229
BshTI	ACCGGT	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	4 cut(s)	87, 178, 257, 269
BsmAI	GTCTC	2 cut(s)	97, 345
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	229
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	273
BsrFI	RCCGGY	2 cut(s)	86, 268
BssAI	RCCGGY	2 cut(s)	86, 268
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	155
Bst4CI	ACNGT	3 cut(s)	40, 60, 164
Bst6I	CTCTTC	2 cut(s)	244, 350
BstACI	GRCGYC	1 cut(s)	5
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	2 cut(s)	97, 345
BstMBI	GATC	1 cut(s)	318
BstPI	GGTNACC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	229
BsuTUI	ATCGAT	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	137
Cfr10I	RCCGGY	2 cut(s)	86, 268
Cfr13I	GGNCC	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	160, 266
CspAI	ACCGGT	1 cut(s)	268
CviJI	RGCY	4 cut(s)	23, 144, 188, 229
CviKI_1	RGCY	4 cut(s)	23, 144, 188, 229
CviQI	GTAC	2 cut(s)	160, 266
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	244, 350
EarI	CTCTTC	2 cut(s)	244, 350
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	173
EcoRV	GATATC	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	25
FaiI	YATR	1 cut(s)	14
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	4 cut(s)	87, 178, 257, 269
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	33, 338
HpaII	CCGG	4 cut(s)	87, 178, 257, 269
HphI	GGTGA	2 cut(s)	28, 185
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	20, 79
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	4 cut(s)	10, 44, 314, 338
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	3 cut(s)	40, 60, 164
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	20, 28
LpnPI	CCDG	6 cut(s)	100, 154, 191, 270, 282, 291
MaeIII	GTNAC	2 cut(s)	34, 173
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	4 cut(s)	60, 261, 328, 337
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	3 cut(s)	116, 147, 352
MlyI	GAGTC	2 cut(s)	42, 347
MnlI	CCTC	8 cut(s)	36, 64, 145, 164, 219, 245, 282, 285
MspI	CCGG	4 cut(s)	87, 178, 257, 269
Mva1269I	GAATGC	1 cut(s)	226
MvnI	CGCG	1 cut(s)	31
NdeII	GATC	1 cut(s)	318
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	2 cut(s)	34, 173
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	268
PleI	GAGTC	2 cut(s)	41, 346
PpsI	GAGTC	2 cut(s)	41, 346
Psp124BI	GAGCTC	1 cut(s)	25
PspEI	GGTNACC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	254
RsaI	GTAC	2 cut(s)	161, 267
RsaNI	GTAC	2 cut(s)	160, 266
SacI	GAGCTC	1 cut(s)	25
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	42, 347
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	5 cut(s)	25, 52, 146, 175, 190
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	3 cut(s)	116, 147, 352
SsiI	CCGC	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	25
TaaI	ACNGT	3 cut(s)	40, 60, 164
TaqI	TCGA	2 cut(s)	327, 333
TasI	AATT	3 cut(s)	116, 147, 352
TatI	WGTACW	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	34, 173
Tsp45I	GTSAC	2 cut(s)	34, 173
VpaK11BI	GGWCC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.