Rroxscaffold_6G00416510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005476
Physical Location & Seq
Forward (+)
38525304 .. 38526131
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416510.1

Sequence Viewer

Length: 828 bp
ATGGTATCAGAAATAACTGAAGAGAAGGATGATGAGAGTAGTTATTTTGTTGATCCACATGTTCAGAAGGAGAGAATAAGGTGTATTATAGAGTATCAGAAGTCTCTTTATCTGTCTTCTTCTTCGTCATCTTCCTCTTCATCCTCTGCTGCTTCATGTTCCTCGTTCTCTTCATCTCAAAAAAGAAGCAGTTCGTTAAGTTTGGTTCAAGGAGGAAACACGTCTTCGCAGATATCAGAAATAATTGAAGAGAAGAATGATGAGGACAGTTGTTGTGTTGATCCAGAAGCTCAGAGGGAAAGGATAAGGCGGATTATAGAGCATCAGAAATCACTTTGGCAATCTTCGTCTTCCTCATCTTCCTCAGCTGCTTCTTGTTCTTCATTTTCTTCATCACGAAGAAGTGGCAGTTTGCTGAGTTTGATGAAAGTAGGAAATACATCCTTGAAGAGATTATTTGAGATGGAACATACTAGTCTGGCTAACCATTTTGATGATTTGAGTGGCTCACCTGTAATTAAGCCTATCCTTCTCTGGGGCAGTGATACAGACAATGAACATGAAATATATAATCCCTGGCCATCCATCATGCAGTTTGGCCCCAGAAATGATTCTAGGATTGATAGGCAAAGTAAGTTTGCTTCAGATGGTAGCGTCATTGAAAGTGATGGTTTCCGTAACAGAGAGGTAAGAACTGGCAAACGGAAGTTGACTAGGAAAAAGTCCTTTAGGAGATTGCCAGGATTTGGAATATGGAGATGCGGAGGATATAGAATGAGATTAAGGTTGAGACGGCTTAGGATTGCTTTTTGTAGAAGAAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

31.2

Weight (kDa)

9.46

Isoelectric Point (pI)

73.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 746
AciI CCGC 2 cut(s) 310, 762
AclWI GGATC 2 cut(s) 47, 275
AcoI YGGCCR 1 cut(s) 578
AcuI CTGAAG 2 cut(s) 39, 627
AfiI CCNNNNNNNGG 2 cut(s) 535, 746
AflIII ACRYGT 2 cut(s) 58, 219
AgsI TTSAA 4 cut(s) 209, 248, 448, 662
AhlI ACTAGT 1 cut(s) 473
AjiI CACGTC 1 cut(s) 222
AjnI CCWGG 2 cut(s) 575, 739
AluBI AGCT 2 cut(s) 290, 368
AluI AGCT 2 cut(s) 290, 368
Alw26I GTCTC 2 cut(s) 108, 784
AlwI GGATC 2 cut(s) 47, 275
AoxI GGCC 2 cut(s) 578, 598
ApeKI GCWGC 2 cut(s) 149, 368
Asp700I GAANNNNTTC 2 cut(s) 190, 610
AspS9I GGNCC 1 cut(s) 599
AsuHPI GGTGA 1 cut(s) 501
BalI TGGCCA 1 cut(s) 580
BarI GAAGNNNNNNTAC 2 cut(s) 625, 657
BbsI GAAGAC 3 cut(s) 108, 216, 342
BbvCI CCTCAGC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 136, 355
BccI CCATC 5 cut(s) 457, 589, 593, 641, 662
BceAI ACGGC 1 cut(s) 809
BciT130I CCWGG 2 cut(s) 577, 741
BcoDI GTCTC 2 cut(s) 108, 784
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 3 cut(s) 474, 615, 714
BisI GCNGC 2 cut(s) 150, 369
BlsI GCNGC 2 cut(s) 151, 370
Bme1390I CCNGG 2 cut(s) 577, 741
BmgBI CACGTC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 2 cut(s) 577, 741
BmsI GCATC 2 cut(s) 331, 749
BpiI GAAGAC 3 cut(s) 108, 216, 342
Bpu10I CCTNAGC 2 cut(s) 364, 797
BsaJI CCNNGG 1 cut(s) 575
Bsc4I CCNNNNNNNGG 2 cut(s) 535, 746
Bse1I ACTGG 1 cut(s) 700
BseBI CCWGG 2 cut(s) 577, 741
BseDI CCNNGG 1 cut(s) 575
BseGI GGATG 4 cut(s) 34, 140, 440, 581
BseLI CCNNNNNNNGG 2 cut(s) 535, 746
BseMII CTCAG 3 cut(s) 305, 378, 407
BseNI ACTGG 1 cut(s) 700
BseXI GCAGC 2 cut(s) 136, 355
BshFI GGCC 2 cut(s) 580, 600
BslI CCNNNNNNNGG 2 cut(s) 535, 746
BsmAI GTCTC 2 cut(s) 108, 784
BsmBI CGTCTC 1 cut(s) 784
BsnI GGCC 2 cut(s) 580, 600
Bsp143I GATC 2 cut(s) 52, 280
BspACI CCGC 2 cut(s) 310, 762
BspANI GGCC 2 cut(s) 580, 600
BspCNI CTCAG 3 cut(s) 304, 377, 408
BspLI GGNNCC 1 cut(s) 601
BspPI GGATC 2 cut(s) 47, 275
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 1 cut(s) 575
BssMI GATC 2 cut(s) 52, 280
Bst2UI CCWGG 2 cut(s) 577, 741
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 5 cut(s) 15, 142, 175, 243, 443
BstDEI CTNAG 4 cut(s) 291, 364, 416, 797
BstF5I GGATG 4 cut(s) 34, 140, 440, 581
BstKTI GATC 2 cut(s) 55, 283
BstMAI GTCTC 2 cut(s) 108, 784
BstMBI GATC 2 cut(s) 52, 280
BstNI CCWGG 2 cut(s) 577, 741
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 575, 739
BstV1I GCAGC 2 cut(s) 136, 355
BstV2I GAAGAC 3 cut(s) 108, 216, 342
BsuRI GGCC 2 cut(s) 580, 600
BtrI CACGTC 1 cut(s) 222
BtsCI GGATG 4 cut(s) 34, 140, 440, 581
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 599
CseI GACGC 1 cut(s) 643
CviAII CATG 4 cut(s) 59, 156, 560, 589
CviJI RGCY 8 cut(s) 290, 368, 482, 507, 523, 580, 600, 796
CviKI_1 RGCY 8 cut(s) 290, 368, 482, 507, 523, 580, 600, 796
DdeI CTNAG 4 cut(s) 291, 364, 416, 797
DpnI GATC 2 cut(s) 54, 282
DpnII GATC 2 cut(s) 52, 280
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 5 cut(s) 15, 142, 175, 243, 443
EarI CTCTTC 5 cut(s) 15, 142, 175, 243, 443
EciI GGCGGA 1 cut(s) 325
Eco32I GATATC 1 cut(s) 234
Eco57I CTGAAG 2 cut(s) 39, 627
EcoRII CCWGG 2 cut(s) 575, 739
EcoRV GATATC 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 4 cut(s) 62, 159, 563, 592
FatI CATG 4 cut(s) 58, 155, 559, 588
Fnu4HI GCNGC 2 cut(s) 150, 369
FokI GGATG 4 cut(s) 41, 127, 427, 568
Fsp4HI GCNGC 2 cut(s) 150, 369
FspBI CTAG 3 cut(s) 474, 615, 714
GluI GCNGC 2 cut(s) 150, 369
HaeIII GGCC 2 cut(s) 580, 600
HgaI GACGC 1 cut(s) 643
Hin1II CATG 4 cut(s) 62, 159, 563, 592
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HinfI GANTC 1 cut(s) 611
HphI GGTGA 1 cut(s) 501
Hpy166II GTNNAC 1 cut(s) 711
Hpy188I TCNGA 7 cut(s) 10, 66, 99, 238, 294, 327, 646
Hpy188III TCNNGA 2 cut(s) 284, 396
Hpy8I GTNNAC 1 cut(s) 711
HpyAV CCTTC 3 cut(s) 19, 61, 539
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 592
HpyF3I CTNAG 4 cut(s) 291, 364, 416, 797
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 4 cut(s) 62, 159, 563, 592
Kzo9I GATC 2 cut(s) 52, 280
Lsp1109I GCAGC 2 cut(s) 136, 355
LweI GCATC 2 cut(s) 331, 749
MaeI CTAG 3 cut(s) 474, 615, 714
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 677
MalI GATC 2 cut(s) 54, 282
MboI GATC 2 cut(s) 52, 280
MlsI TGGCCA 1 cut(s) 580
MluCI AATT 2 cut(s) 243, 516
MluNI TGGCCA 1 cut(s) 580
Mox20I TGGCCA 1 cut(s) 580
MroXI GAANNNNTTC 2 cut(s) 190, 610
MscI TGGCCA 1 cut(s) 580
MseI TTAA 3 cut(s) 197, 519, 782
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 577, 741
MvaI CCWGG 2 cut(s) 577, 741
NdeII GATC 2 cut(s) 52, 280
NlaIII CATG 4 cut(s) 62, 159, 563, 592
NlaIV GGNNCC 1 cut(s) 601
NspI RCATGY 1 cut(s) 62
PciI ACATGT 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 190, 610
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 2 cut(s) 151, 370
PscI ACATGT 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 575, 739
PspGI CCWGG 2 cut(s) 575, 739
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 3 cut(s) 197, 519, 782
SatI GCNGC 2 cut(s) 150, 369
Sau3AI GATC 2 cut(s) 52, 280
Sau96I GGNCC 1 cut(s) 599
ScrFI CCNGG 2 cut(s) 577, 741
SetI ASST 7 cut(s) 83, 224, 292, 370, 514, 690, 788
SfaNI GCATC 2 cut(s) 331, 749
SmiMI CAYNNNNRTG 1 cut(s) 492
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 2 cut(s) 243, 516
SsiI CCGC 2 cut(s) 310, 762
SspMI CTAG 3 cut(s) 474, 615, 714
StyD4I CCNGG 2 cut(s) 575, 739
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 224
TasI AATT 2 cut(s) 243, 516
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 3 cut(s) 197, 519, 782
Tru9I TTAA 3 cut(s) 197, 519, 782
TscAI CASTG 1 cut(s) 547
TseI GCWGC 2 cut(s) 149, 368
TspDTI ATGAA 8 cut(s) 129, 144, 162, 372, 381, 440, 570, 576
TspGWI ACGGA 2 cut(s) 665, 718
TspRI CASTG 1 cut(s) 547
Van91I CCANNNNNTGG 1 cut(s) 746
XceI RCATGY 1 cut(s) 62
XmnI GAANNNNTTC 2 cut(s) 190, 610
XspI CTAG 3 cut(s) 474, 615, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.