RLG00000024782

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005476
Physical Location & Seq
Forward (+)
39104820 .. 39106683
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024782

Sequence Viewer

Length: 1278 bp
ATGGCTTCACTCATACTCGGAGCTCTCCCTATCCCCTCCCAATCGCTCGCTCTGAACTCTCGCATTTCGTTTTCTCAATCCGAAACCCTAGCCATTTCACTTCCTTCTCCCACTGCTTCACTCTCAATTTCCACCGCTACTACTCCCTCAGTCCCTTCAGTGTACTGTGGCAGAGGCGATAAGAAAACCGAAAGAGGAAAGCGTTTCAATCACTCTTTCGGAAATGCGAGGCCAAGGAACAAGAAGAAAGGGAGAGGACCACCTAGGGTTCCGGTGCCGGCGGCTCCGCCTAAGAAAGATAAGTTTGAGGACGATTCGGTCGTCAAGGGAGTTATCGCCGCCTTAGTCCCACCTTTTGGTATTTCCTTCATTCTTTCTGTGCTTCTTCATGAACCTGTATCTTGTCTACCCATTTATGTAATCCAAGTACCTGAAACCTCTAGGATTACAATGGTATCGGAAATAACTGAAGAGAAGGATGATGAGAGTAGTTATTTTGTTGATCCAGAAGTTCAGAAGGAGAGAATAAGGCGTATTATAGAGTATCAGAAGTCTCTTTATCAGCCTTCTTCGTCGTCATCTTTGTCTTCATCCTCTGCTTCTTCATGTTCCTCGTTCTCTTCATCTCGAAAAAGAAGCAGTTTGTTAAGTTCGGTTCAAGGAGGAAACACTTCTTCGCAGATATCAGAAATAATTGAAGAGAAGAATGATGAGGATAGTTGTTGTGTTGATCCAGAAGCTCAGAGGGAAAGGATAAGGCGGATTATAGAGCATCAGAAATCACTTTGGCAATCTTCGTCTTCCTTGTCTTCCTCAGCTGCTTCTTGTTCTTCATTTTCTTCATCACGAAGAAGTGGCAGTTTGCTGAGTTTGATGAAAGTAGGAAATACATCCTTGAAGAGATTATTTGAGATGGAGCATACTAGTCTGGCTAACCATTTTGATGATTTGAGTGGCTCACCTGTAATTAAGCCTATCCTTCTCTGGGGCAGTGATACAGACAATGAACATGAAATATATAATCCCTGGCCATCCATCATGCAGTTTGGCCCCAGAAATGATTCTAGGATTGATAGGCAAAGTAAGTTTGCTTCAGATGGTAGTGTCATTGAAAGTGATGGTTTCCATAATAGAGAGGTAAGAACTGGCAAACGGAAGTTGACTAGGAAAAAGTCCTTTAGGAGATTGCCAGGATTTGGCATATGGAGATGCGGTGGATATAGAATGAGATTAAGGTTGAGACGGCTTAGGATTGCTTTTTGTAGAAGAAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

47.31

Weight (kDa)

9.8

Isoelectric Point (pI)

70.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPS31 PF17067 1 - 100 3e-36 Ribosomal protein S31e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 274
AccB7I CCANNNNNTGG 2 cut(s) 356, 1196
AccI GTMKAC 1 cut(s) 406
AciI CCGC 6 cut(s) 135, 281, 287, 339, 760, 1212
AclWI GGATC 2 cut(s) 497, 725
AcoI YGGCCR 1 cut(s) 1028
AcuI CTGAAG 3 cut(s) 141, 489, 1077
AfaI GTAC 2 cut(s) 164, 429
AfiI CCNNNNNNNGG 3 cut(s) 356, 985, 1196
AgsI TTSAA 5 cut(s) 208, 659, 698, 898, 1112
AhlI ACTAGT 1 cut(s) 923
AjnI CCWGG 2 cut(s) 1025, 1189
AluBI AGCT 3 cut(s) 23, 740, 818
AluI AGCT 3 cut(s) 23, 740, 818
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 558, 1234
AlwI GGATC 2 cut(s) 497, 725
AoxI GGCC 3 cut(s) 230, 1028, 1048
ApeKI GCWGC 1 cut(s) 818
Asp700I GAANNNNTTC 2 cut(s) 670, 1060
AspA2I CCTAGG 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 257, 1049
AsuHPI GGTGA 1 cut(s) 951
AvaII GGWCC 1 cut(s) 257
AvrII CCTAGG 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 438, 471
BalI TGGCCA 1 cut(s) 1030
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 1075, 1107
BbsI GAAGAC 3 cut(s) 579, 792, 801
Bbv12I GWGCWC 1 cut(s) 25
BbvCI CCTCAGC 1 cut(s) 814
BbvI GCAGC 1 cut(s) 805
BccI CCATC 5 cut(s) 907, 1039, 1043, 1091, 1112
BceAI ACGGC 1 cut(s) 1259
BciT130I CCWGG 2 cut(s) 1027, 1191
BcoDI GTCTC 2 cut(s) 558, 1234
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 6 cut(s) 89, 264, 441, 924, 1065, 1164
BisI GCNGC 3 cut(s) 282, 339, 819
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 3 cut(s) 283, 340, 820
Bme1390I CCNGG 2 cut(s) 1027, 1191
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 257, 1049
BmiI GGNNCC 4 cut(s) 270, 276, 285, 1051
BmrFI CCNGG 2 cut(s) 1027, 1191
BmsI GCATC 2 cut(s) 781, 1199
BpiI GAAGAC 3 cut(s) 579, 792, 801
Bpu10I CCTNAGC 2 cut(s) 814, 1247
BsaJI CCNNGG 3 cut(s) 233, 263, 1025
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 1198, 1228
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 985, 1196
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 1150
BseBI CCWGG 2 cut(s) 1027, 1191
BseDI CCNNGG 3 cut(s) 233, 263, 1025
BseGI GGATG 4 cut(s) 484, 590, 890, 1031
BseLI CCNNNNNNNGG 3 cut(s) 356, 985, 1196
BseMII CTCAG 4 cut(s) 162, 755, 828, 857
BseNI ACTGG 1 cut(s) 1150
BseXI GCAGC 1 cut(s) 805
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 3 cut(s) 232, 1030, 1050
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 272, 278
BslFI GGGAC 2 cut(s) 137, 332
BslI CCNNNNNNNGG 3 cut(s) 356, 985, 1196
BsmAI GTCTC 2 cut(s) 558, 1234
BsmBI CGTCTC 1 cut(s) 1234
BsmFI GGGAC 2 cut(s) 137, 332
BsnI GGCC 3 cut(s) 232, 1030, 1050
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 502, 730
BspACI CCGC 6 cut(s) 135, 281, 287, 339, 760, 1212
BspANI GGCC 3 cut(s) 232, 1030, 1050
BspCNI CTCAG 4 cut(s) 161, 754, 827, 858
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 4 cut(s) 270, 276, 285, 1051
BspPI GGATC 2 cut(s) 497, 725
BspT107I GGYRCC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 1 cut(s) 1150
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 3 cut(s) 233, 263, 1025
BssMI GATC 2 cut(s) 502, 730
BssT1I CCWWGG 2 cut(s) 233, 263
Bst2UI CCWGG 2 cut(s) 1027, 1191
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 4 cut(s) 465, 625, 693, 893
BstC8I GCNNGC 2 cut(s) 48, 279
BstDEI CTNAG 7 cut(s) 148, 291, 343, 741, 814, 866, 1247
BstF5I GGATG 4 cut(s) 484, 590, 890, 1031
BstKTI GATC 2 cut(s) 505, 733
BstMAI GTCTC 2 cut(s) 558, 1234
BstMBI GATC 2 cut(s) 502, 730
BstMCI CGRYCG 1 cut(s) 321
BstNI CCWGG 2 cut(s) 1027, 1191
BstSCI CCNGG 2 cut(s) 1025, 1189
BstV1I GCAGC 1 cut(s) 805
BstV2I GAAGAC 3 cut(s) 579, 792, 801
BsuRI GGCC 3 cut(s) 232, 1030, 1050
BtsCI GGATG 4 cut(s) 484, 590, 890, 1031
BtsI GCAGTG 2 cut(s) 111, 997
BtsIMutI CAGTG 3 cut(s) 111, 165, 997
Cac8I GCNNGC 2 cut(s) 48, 279
CciI TCATGA 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 257, 1049
Csp6I GTAC 2 cut(s) 163, 428
CviAII CATG 4 cut(s) 389, 606, 1010, 1039
CviQI GTAC 2 cut(s) 163, 428
DdeI CTNAG 7 cut(s) 148, 291, 343, 741, 814, 866, 1247
DpnI GATC 2 cut(s) 504, 732
DpnII GATC 2 cut(s) 502, 730
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 1028
Eam1104I CTCTTC 4 cut(s) 465, 625, 693, 893
EarI CTCTTC 4 cut(s) 465, 625, 693, 893
EciI GGCGGA 2 cut(s) 276, 775
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 233, 263
Eco24I GRGCYC 1 cut(s) 25
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 3 cut(s) 141, 489, 1077
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 1025, 1189
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 2 cut(s) 233, 263
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 233, 263
Esp3I CGTCTC 1 cut(s) 1234
FaeI CATG 4 cut(s) 392, 609, 1013, 1042
FaqI GGGAC 2 cut(s) 137, 332
FatI CATG 4 cut(s) 388, 605, 1009, 1038
FauNDI CATATG 1 cut(s) 1202
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 3 cut(s) 282, 339, 819
FokI GGATG 4 cut(s) 491, 577, 877, 1018
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 282, 339, 819
FspBI CTAG 6 cut(s) 89, 264, 441, 924, 1065, 1164
GluI GCNGC 3 cut(s) 282, 339, 819
HaeIII GGCC 3 cut(s) 232, 1030, 1050
HapII CCGG 2 cut(s) 272, 278
Hin1II CATG 4 cut(s) 392, 609, 1013, 1042
HincII GTYRAC 1 cut(s) 1161
HindII GTYRAC 1 cut(s) 1161
HinfI GANTC 2 cut(s) 314, 1061
HpaII CCGG 2 cut(s) 272, 278
HphI GGTGA 1 cut(s) 951
Hpy166II GTNNAC 3 cut(s) 163, 407, 1161
Hpy188III TCNNGA 5 cut(s) 389, 506, 627, 734, 846
Hpy8I GTNNAC 3 cut(s) 163, 407, 1161
Hpy99I CGWCG 1 cut(s) 577
HpyAV CCTTC 7 cut(s) 114, 165, 376, 469, 511, 576, 989
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 1042
HpyF3I CTNAG 7 cut(s) 148, 291, 343, 741, 814, 866, 1247
Hsp92II CATG 4 cut(s) 392, 609, 1013, 1042
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 502, 730
LmnI GCTCC 3 cut(s) 20, 289, 916
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 2 cut(s) 781, 1199
MaeI CTAG 6 cut(s) 89, 264, 441, 924, 1065, 1164
MalI GATC 2 cut(s) 504, 732
MboI GATC 2 cut(s) 502, 730
MhlI GDGCHC 1 cut(s) 25
MlsI TGGCCA 1 cut(s) 1030
MluCI AATT 3 cut(s) 126, 693, 966
MluNI TGGCCA 1 cut(s) 1030
Mox20I TGGCCA 1 cut(s) 1030
MroNI GCCGGC 1 cut(s) 277
MroXI GAANNNNTTC 2 cut(s) 670, 1060
MscI TGGCCA 1 cut(s) 1030
MseI TTAA 3 cut(s) 647, 969, 1232
MslI CAYNNNNRTG 1 cut(s) 942
Msp20I TGGCCA 1 cut(s) 1030
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 2 cut(s) 272, 278
MspR9I CCNGG 2 cut(s) 1027, 1191
MvaI CCWGG 2 cut(s) 1027, 1191
NaeI GCCGGC 1 cut(s) 279
NdeI CATATG 1 cut(s) 1202
NdeII GATC 2 cut(s) 502, 730
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 4 cut(s) 392, 609, 1013, 1042
NlaIV GGNNCC 4 cut(s) 270, 276, 285, 1051
PagI TCATGA 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdiI GCCGGC 1 cut(s) 279
PdmI GAANNNNTTC 2 cut(s) 670, 1060
PfeI GAWTC 2 cut(s) 314, 1061
PflMI CCANNNNNTGG 2 cut(s) 356, 1196
PkrI GCNGC 3 cut(s) 283, 340, 820
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 1025, 1189
PspGI CCWGG 2 cut(s) 1025, 1189
PspN4I GGNNCC 4 cut(s) 270, 276, 285, 1051
PspPI GGNCC 2 cut(s) 257, 1049
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 2 cut(s) 164, 429
RsaNI GTAC 2 cut(s) 163, 428
RseI CAYNNNNRTG 1 cut(s) 942
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 3 cut(s) 647, 969, 1232
SatI GCNGC 3 cut(s) 282, 339, 819
Sau3AI GATC 2 cut(s) 502, 730
Sau96I GGNCC 2 cut(s) 257, 1049
ScrFI CCNGG 2 cut(s) 1027, 1191
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 2 cut(s) 781, 1199
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 942
SpeI ACTAGT 1 cut(s) 923
Sse9I AATT 3 cut(s) 126, 693, 966
SsiI CCGC 6 cut(s) 135, 281, 287, 339, 760, 1212
SspI AATATT 1 cut(s) 1274
SspMI CTAG 6 cut(s) 89, 264, 441, 924, 1065, 1164
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 1025, 1189
StyI CCWWGG 2 cut(s) 233, 263
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 628
TaqII GACCGA 1 cut(s) 307
TasI AATT 3 cut(s) 126, 693, 966
TatI WGTACW 1 cut(s) 162
TauI GCSGC 2 cut(s) 284, 341
TfiI GAWTC 2 cut(s) 314, 1061
Tru1I TTAA 3 cut(s) 647, 969, 1232
Tru9I TTAA 3 cut(s) 647, 969, 1232
TscAI CASTG 3 cut(s) 118, 165, 997
TseI GCWGC 1 cut(s) 818
TspGWI ACGGA 1 cut(s) 1168
TspRI CASTG 3 cut(s) 118, 165, 997
Van91I CCANNNNNTGG 2 cut(s) 356, 1196
VpaK11BI GGWCC 1 cut(s) 257
XmaJI CCTAGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 406
XmnI GAANNNNTTC 2 cut(s) 670, 1060
XspI CTAG 6 cut(s) 89, 264, 441, 924, 1065, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.