FvH4_6g11721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005476
Physical Location & Seq
Reverse (-)
7014461 .. 7015300
840 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11721.t1

Sequence Viewer

Length: 840 bp
ATGGTATCGGAAATAACTGAAGAGAAGGATGATGAGAGTAGTTATTTTGTTGATCCAGAAGTTCAGAAGGAGAGAATAAGGTGTATTATAGAGTATCAGAAGTCTCTTTATCAATCTTCTTCTTTGTCATCTTCCTCGTCTTCCTCTGCTGCTTCATGTTCCTCATTTTCTTCATCTAAAGAAAGTAGCAGTTCATTAGGTTTGGTTCAAGGAGGAAACATATCTTTGAGGGTATCAGAAATAATTGAAGAGAAGAATGATGATGACGACAGTTGTTGCGTTGATCCAGAAGCTCAGAAAGAAAGGATAAGGCGGATTATAGAGCATCAGAAATCACTTTGGCAATCTTCGTCTTCCTCATCTTCCTTGTCTTCCTCAGCTGCTTCATGTTCCTCATTTTCTTCATCTCGAAGAAGTGCCAGTTTGCTAAGTTTGATGAAAGTAGGAAACACATCCTTGAAGAGATTATTTGAGATGGAGCATACTAGTCTGGCTAACCATTTTGATGATTTAAGTGGCTCACCTGTAATTAAGCCTATCCTTCTCTGGGGTAGTGATACAGACAATGAACATGAAACACATGATCCCTGGCCATCCATCATGCAGTTTGGACCCAGAAATGATTCTAGGATTGATAGGCAAAGTAAGTTCGTCTCAGATGGTGGCTTCATCGAAGGTGATGACTTCCATAATAGAGAGGTAAGAACTGGCAAACGGAAGTTGACTAGGAAAAAGGCCTTTAGGAGATTGCCAGGATTTGGCATATGGAGATGTGGAGGATATAGAATGAGATTAAGGTTGAGACGGCTTAGGATTGCTTTTTGTAGAAGAAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.57

Weight (kDa)

8.81

Isoelectric Point (pI)

71.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 758
AciI CCGC 1 cut(s) 313
AclWI GGATC 3 cut(s) 47, 278, 578
AcoI YGGCCR 1 cut(s) 590
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 547, 758
AgsI TTSAA 3 cut(s) 209, 248, 460
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 2 cut(s) 587, 751
AluBI AGCT 2 cut(s) 293, 380
AluI AGCT 2 cut(s) 293, 380
Alw26I GTCTC 3 cut(s) 108, 658, 796
AlwI GGATC 3 cut(s) 47, 278, 578
AoxI GGCC 2 cut(s) 590, 735
ApeKI GCWGC 2 cut(s) 149, 380
Asp700I GAANNNNTTC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 513, 689
AvaII GGWCC 1 cut(s) 611
BalI TGGCCA 1 cut(s) 592
BbsI GAAGAC 3 cut(s) 132, 345, 363
BbvCI CCTCAGC 1 cut(s) 376
BbvI GCAGC 2 cut(s) 136, 367
BccI CCATC 4 cut(s) 469, 601, 605, 653
BceAI ACGGC 1 cut(s) 821
BciT130I CCWGG 2 cut(s) 589, 753
BcoDI GTCTC 3 cut(s) 108, 658, 796
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 3 cut(s) 486, 627, 726
BisI GCNGC 2 cut(s) 150, 381
BlsI GCNGC 2 cut(s) 151, 382
Bme1390I CCNGG 2 cut(s) 589, 753
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 2 cut(s) 589, 753
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 3 cut(s) 132, 345, 363
Bpu10I CCTNAGC 2 cut(s) 376, 809
BsaJI CCNNGG 1 cut(s) 587
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 758
Bse1I ACTGG 2 cut(s) 420, 712
BseBI CCWGG 2 cut(s) 589, 753
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 3 cut(s) 34, 452, 593
BseLI CCNNNNNNNGG 2 cut(s) 547, 758
BseMII CTCAG 3 cut(s) 308, 390, 669
BseNI ACTGG 2 cut(s) 420, 712
BseXI GCAGC 2 cut(s) 136, 367
BshFI GGCC 2 cut(s) 592, 737
BslI CCNNNNNNNGG 2 cut(s) 547, 758
BsmAI GTCTC 3 cut(s) 108, 658, 796
BsmBI CGTCTC 2 cut(s) 658, 796
BsnI GGCC 2 cut(s) 592, 737
Bsp143I GATC 3 cut(s) 52, 283, 583
BspACI CCGC 1 cut(s) 313
BspANI GGCC 2 cut(s) 592, 737
BspCNI CTCAG 3 cut(s) 307, 389, 668
BspLI GGNNCC 1 cut(s) 613
BspPI GGATC 3 cut(s) 47, 278, 578
BsrI ACTGG 2 cut(s) 420, 712
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 3 cut(s) 52, 283, 583
Bst2UI CCWGG 2 cut(s) 589, 753
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 3 cut(s) 15, 243, 455
BstDEI CTNAG 5 cut(s) 294, 376, 428, 655, 809
BstF5I GGATG 3 cut(s) 34, 452, 593
BstKTI GATC 3 cut(s) 55, 286, 586
BstMAI GTCTC 3 cut(s) 108, 658, 796
BstMBI GATC 3 cut(s) 52, 283, 583
BstNI CCWGG 2 cut(s) 589, 753
BstSCI CCNGG 2 cut(s) 587, 751
BstV1I GCAGC 2 cut(s) 136, 367
BstV2I GAAGAC 3 cut(s) 132, 345, 363
BsuRI GGCC 2 cut(s) 592, 737
BtsCI GGATG 3 cut(s) 34, 452, 593
Cfr13I GGNCC 1 cut(s) 611
CviAII CATG 5 cut(s) 156, 387, 572, 581, 601
CviJI RGCY 9 cut(s) 293, 380, 494, 519, 535, 592, 666, 737, 808
CviKI_1 RGCY 9 cut(s) 293, 380, 494, 519, 535, 592, 666, 737, 808
DdeI CTNAG 5 cut(s) 294, 376, 428, 655, 809
DpnI GATC 3 cut(s) 54, 285, 585
DpnII GATC 3 cut(s) 52, 283, 583
EaeI YGGCCR 1 cut(s) 590
Eam1104I CTCTTC 3 cut(s) 15, 243, 455
EarI CTCTTC 3 cut(s) 15, 243, 455
EciI GGCGGA 1 cut(s) 328
Eco147I AGGCCT 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 587, 751
Esp3I CGTCTC 2 cut(s) 658, 796
FaeI CATG 5 cut(s) 159, 390, 575, 584, 604
FatI CATG 5 cut(s) 155, 386, 571, 580, 600
FauNDI CATATG 1 cut(s) 764
Fnu4HI GCNGC 2 cut(s) 150, 381
FokI GGATG 3 cut(s) 41, 439, 580
Fsp4HI GCNGC 2 cut(s) 150, 381
FspBI CTAG 3 cut(s) 486, 627, 726
GluI GCNGC 2 cut(s) 150, 381
HaeIII GGCC 2 cut(s) 592, 737
Hin1II CATG 5 cut(s) 159, 390, 575, 584, 604
HincII GTYRAC 1 cut(s) 723
HindII GTYRAC 1 cut(s) 723
HinfI GANTC 1 cut(s) 623
HphI GGTGA 2 cut(s) 513, 689
Hpy166II GTNNAC 1 cut(s) 723
Hpy188I TCNGA 7 cut(s) 10, 66, 99, 238, 297, 330, 658
Hpy188III TCNNGA 3 cut(s) 56, 287, 408
Hpy8I GTNNAC 1 cut(s) 723
HpyAV CCTTC 4 cut(s) 19, 61, 551, 668
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 604
HpyF3I CTNAG 5 cut(s) 294, 376, 428, 655, 809
Hsp92II CATG 5 cut(s) 159, 390, 575, 584, 604
Kzo9I GATC 3 cut(s) 52, 283, 583
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 2 cut(s) 136, 367
LweI GCATC 1 cut(s) 334
MaeI CTAG 3 cut(s) 486, 627, 726
MalI GATC 3 cut(s) 54, 285, 585
MboI GATC 3 cut(s) 52, 283, 583
MlsI TGGCCA 1 cut(s) 592
MluCI AATT 2 cut(s) 243, 528
MluNI TGGCCA 1 cut(s) 592
Mox20I TGGCCA 1 cut(s) 592
MroXI GAANNNNTTC 1 cut(s) 622
MscI TGGCCA 1 cut(s) 592
MseI TTAA 3 cut(s) 512, 531, 794
MslI CAYNNNNRTG 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 592
MspA1I CMGCKG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 589, 753
MvaI CCWGG 2 cut(s) 589, 753
NdeI CATATG 1 cut(s) 764
NdeII GATC 3 cut(s) 52, 283, 583
NlaIII CATG 5 cut(s) 159, 390, 575, 584, 604
NlaIV GGNNCC 1 cut(s) 613
PceI AGGCCT 1 cut(s) 737
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 623
PflMI CCANNNNNTGG 1 cut(s) 758
PkrI GCNGC 2 cut(s) 151, 382
Psp6I CCWGG 2 cut(s) 587, 751
PspGI CCWGG 2 cut(s) 587, 751
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 380
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 3 cut(s) 512, 531, 794
SatI GCNGC 2 cut(s) 150, 381
Sau3AI GATC 3 cut(s) 52, 283, 583
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 2 cut(s) 589, 753
SetI ASST 8 cut(s) 83, 202, 295, 382, 526, 679, 702, 800
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 504
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 2 cut(s) 243, 528
SseBI AGGCCT 1 cut(s) 737
SsiI CCGC 1 cut(s) 313
SspMI CTAG 3 cut(s) 486, 627, 726
StuI AGGCCT 1 cut(s) 737
StyD4I CCNGG 2 cut(s) 587, 751
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 2 cut(s) 409, 672
TasI AATT 2 cut(s) 243, 528
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 3 cut(s) 512, 531, 794
Tru9I TTAA 3 cut(s) 512, 531, 794
TseI GCWGC 2 cut(s) 149, 380
TspDTI ATGAA 9 cut(s) 144, 162, 183, 375, 393, 452, 582, 588, 658
TspGWI ACGGA 1 cut(s) 730
Van91I CCANNNNNTGG 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 611
XmnI GAANNNNTTC 1 cut(s) 622
XspI CTAG 3 cut(s) 486, 627, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.