Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005476

Physical Location & Seq

Genomic Coordinates Forward (+)

16569576 .. 16570447

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCAGCTTGGGCTTTTCAAAGCAAACTACAAAACGCAGACAAAATGGAAGCGATATTCAACCCAACGGTCTCTAAAACAGAGCCACAGTTTCCCTCGAAAACCTTATCCGCTTCTTCTCCTCAAGCTCCGGCCATGGCGTCACTGATACTCGGTGCTCCCCCGGCCCCTTCTCAGTCGCTCGCTTTCAAGTCCCGCATTTCGTTCTCTCGCTCCGAAACCCTTGCCATTTCTCTCCCCTCCTCCACTGCTTCGCTCTCGCTCTCCACAGCTTCTTCTTCACCGGTTCCTTCAGTATATTGCGGCAGAGGCGATAAGAAAACCGAAAGGGGAAAGCGCTTCAATCACTCTTTTGGAAATGCGCGGCCGCGGAACAAGAACAAAGGCAGAGGACCACCTAGGGTTCCGGTGCCGGCGGCGCCCCCAAAGAAAGATAAGTTTGAGGACGATACGATTGTCAAAGTTGAAATTGATGAGTCCTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

163

Amino Acids

17.32

Weight (kDa)

10.06

Isoelectric Point (pI)

70.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38140
fragaria_vesca	FvH4_6g11721 FvH4_6g11730
malus_domestica	MD04G1149600.v1.1 MD12G1164000.v1.1 MD12G1164100.v1.1
prunus_persica	Prupe.6G274500_v2.0.a1 Prupe.6G274500_v2.0.a1 Prupe.6G274600_v2.0.a1
pyrus_communis	pycom04g13510 pycom04g13520 pycom12g15680
rosa_chinensis	RchiOBHm_Chr3g0463501 RchiOBHm_Chr3g0463511
rosa_laevigata	RLG00000024782
rosa_multiflora	Rmu_sc0000923.1_g000021
rosa_roxburghii	Rroxscaffold_6G00416500 Rroxscaffold_6G00416510
rosa_rugosa	Rorug03G0065200 Rorug03G0065300
rosa_samantha	Rh3AG122400 Rh3AG122500 Rh3BG127100 Rh3BG127200 Rh3CG129000 Rh3CG129100 Rh3DG127900 Rh3DG128000
rosa_wichuraiana	Rw0G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	409, 418
AccII	CGCG	2 cut(s)	364, 370
AciI	CCGC	7 cut(s)	111, 196, 303, 364, 368, 370, 416
AcoI	YGGCCR	2 cut(s)	132, 365
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	2 cut(s)	140, 419
AfeI	AGCGCT	1 cut(s)	338
AgeI	ACCGGT	1 cut(s)	283
AgsI	TTSAA	5 cut(s)	20, 61, 190, 343, 467
AluBI	AGCT	3 cut(s)	8, 128, 272
AluI	AGCT	3 cut(s)	8, 128, 272
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	76
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	3 cut(s)	132, 165, 365
AsiGI	ACCGGT	1 cut(s)	283
AspA2I	CCTAGG	1 cut(s)	398
AspLEI	GCGC	3 cut(s)	339, 364, 421
AspS9I	GGNCC	2 cut(s)	166, 392
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	392
AvrII	CCTAGG	1 cut(s)	398
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BanI	GGYRCC	2 cut(s)	409, 418
Bbv12I	GWGCWC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	399
BfoI	RGCGCY	2 cut(s)	340, 422
BisI	GCNGC	4 cut(s)	304, 365, 368, 417
BlnI	CCTAGG	1 cut(s)	398
BlsI	GCNGC	4 cut(s)	305, 366, 369, 418
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	166, 392
BmiI	GGNNCC	5 cut(s)	168, 288, 405, 411, 420
BmrFI	CCNGG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	164
BsaHI	GRCGYC	2 cut(s)	140, 419
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	135, 162, 368, 398
BsaWI	WCCGGW	2 cut(s)	283, 406
Bse118I	RCCGGY	2 cut(s)	283, 412
BseDI	CCNNGG	4 cut(s)	135, 162, 368, 398
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	111, 232
BseX3I	CGGCCG	1 cut(s)	365
Bsh1236I	CGCG	2 cut(s)	364, 370
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	134, 167, 367
BshNI	GGYRCC	2 cut(s)	409, 418
BshTI	ACCGGT	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	5 cut(s)	131, 164, 284, 407, 413
BslFI	GGGAC	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	134, 167, 367
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	7 cut(s)	111, 196, 303, 364, 368, 370, 416
BspANI	GGCC	3 cut(s)	134, 167, 367
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	2 cut(s)	364, 370
BspLI	GGNNCC	5 cut(s)	168, 288, 405, 411, 420
BspT107I	GGYRCC	2 cut(s)	409, 418
BspTNI	GGTCTC	1 cut(s)	76
BsrFI	RCCGGY	2 cut(s)	283, 412
BssAI	RCCGGY	2 cut(s)	283, 412
BssECI	CCNNGG	4 cut(s)	135, 162, 368, 398
BssNI	GRCGYC	2 cut(s)	140, 419
BssT1I	CCWWGG	2 cut(s)	135, 398
Bst4CI	ACNGT	2 cut(s)	70, 90
BstACI	GRCGYC	2 cut(s)	140, 419
BstC8I	GCNNGC	2 cut(s)	183, 414
BstDEI	CTNAG	2 cut(s)	174, 486
BstDSI	CCRYGG	2 cut(s)	135, 368
BstFNI	CGCG	2 cut(s)	364, 370
BstH2I	RGCGCY	2 cut(s)	340, 422
BstHHI	GCGC	3 cut(s)	339, 364, 421
BstMAI	GTCTC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 309, 418
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	2 cut(s)	364, 370
BstZI	CGGCCG	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	134, 167, 367
BtgI	CCRYGG	2 cut(s)	135, 368
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	143, 246
Cac8I	GCNNGC	2 cut(s)	183, 414
CciNI	GCGGCCGC	1 cut(s)	365
CfoI	GCGC	3 cut(s)	339, 364, 421
Cfr10I	RCCGGY	2 cut(s)	283, 412
Cfr13I	GGNCC	2 cut(s)	166, 392
Cfr42I	CCGCGG	1 cut(s)	371
CseI	GACGC	1 cut(s)	129
CspAI	ACCGGT	1 cut(s)	283
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	8 cut(s)	8, 14, 85, 128, 134, 167, 272, 367
CviKI_1	RGCY	8 cut(s)	8, 14, 85, 128, 134, 167, 272, 367
DdeI	CTNAG	2 cut(s)	174, 486
DinI	GGCGCC	1 cut(s)	420
EaeI	YGGCCR	2 cut(s)	132, 365
EagI	CGGCCG	1 cut(s)	365
EclXI	CGGCCG	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	135, 398
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	392
Eco47III	AGCGCT	1 cut(s)	338
Eco52I	CGGCCG	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	135, 398
EgeI	GGCGCC	1 cut(s)	420
EheI	GGCGCC	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	135, 398
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	137, 298
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	135
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	4 cut(s)	304, 365, 368, 417
Fsp4HI	GCNGC	4 cut(s)	304, 365, 368, 417
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	3 cut(s)	338, 363, 420
GluI	GCNGC	4 cut(s)	304, 365, 368, 417
HaeII	RGCGCY	2 cut(s)	340, 422
HaeIII	GGCC	3 cut(s)	134, 167, 367
HapII	CCGG	5 cut(s)	131, 164, 284, 407, 413
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	3 cut(s)	339, 364, 421
Hin1I	GRCGYC	2 cut(s)	140, 419
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	3 cut(s)	337, 362, 419
HinP1I	GCGC	3 cut(s)	337, 362, 419
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	5 cut(s)	131, 164, 284, 407, 413
HphI	GGTGA	1 cut(s)	273
Hpy188I	TCNGA	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	180, 300
HpyCH4III	ACNGT	2 cut(s)	70, 90
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 309, 418
HpyF3I	CTNAG	2 cut(s)	174, 486
Hsp92I	GRCGYC	2 cut(s)	140, 419
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	3 cut(s)	337, 362, 419
KasI	GGCGCC	1 cut(s)	418
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
KspI	CCGCGG	1 cut(s)	371
LmnI	GCTCC	3 cut(s)	133, 163, 218
LpnPI	CCDG	5 cut(s)	144, 177, 297, 420, 426
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	141
MboII	GAAGA	3 cut(s)	108, 267, 270
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	468
Mly113I	GGCGCC	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	106, 132, 250, 253, 302, 383, 436
MroNI	GCCGGC	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	5 cut(s)	131, 164, 284, 407, 413
MspR9I	CCNGG	1 cut(s)	164
MvnI	CGCG	2 cut(s)	364, 370
MwoI	GCNNNNNNNGC	3 cut(s)	164, 309, 418
NaeI	GCCGGC	1 cut(s)	414
NarI	GGCGCC	1 cut(s)	419
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	135
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	5 cut(s)	168, 288, 405, 411, 420
NmuCI	GTSAC	1 cut(s)	141
NotI	GCGGCCGC	1 cut(s)	365
PdiI	GCCGGC	1 cut(s)	414
PinAI	ACCGGT	1 cut(s)	283
PkrI	GCNGC	4 cut(s)	305, 366, 369, 418
PleI	GAGTC	1 cut(s)	484
PluTI	GGCGCC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	484
PspN4I	GGNNCC	5 cut(s)	168, 288, 405, 411, 420
PspPI	GGNCC	2 cut(s)	166, 392
SacII	CCGCGG	1 cut(s)	371
SatI	GCNGC	4 cut(s)	304, 365, 368, 417
Sau96I	GGNCC	2 cut(s)	166, 392
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	5 cut(s)	10, 107, 130, 274, 400
SfoI	GGCGCC	1 cut(s)	420
Sfr303I	CCGCGG	1 cut(s)	371
SgrBI	CCGCGG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	1 cut(s)	468
SsiI	CCGC	7 cut(s)	111, 196, 303, 364, 368, 370, 416
SspDI	GGCGCC	1 cut(s)	418
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	2 cut(s)	135, 398
TaaI	ACNGT	2 cut(s)	70, 90
TaqI	TCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	468
TauI	GCSGC	4 cut(s)	306, 367, 370, 419
TscAI	CASTG	2 cut(s)	150, 253
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspRI	CASTG	2 cut(s)	150, 253
VpaK11BI	GGWCC	1 cut(s)	392
XmaJI	CCTAGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.