Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005476

Physical Location & Seq

Genomic Coordinates Forward (+)

24551802 .. 24552548

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1164000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCGTCACTGATACTCGGAGCTCCACCAGCCCCCCCTCAATCGCTCGCTTTCAGCTCCCGCATTTCGTTCTCTCACTCCGAAACCCTAGCCGTTTCTCTCCCCTCCTCCACTGTTTCGCTATCACTCTCCACAGCTTCTTCTCCACCAGTCCCTTCAGTGTACTGCGGCAGAGGCGATAAGAAAACCGAAAGGGGAAAGCGCTTCAATCACTCTTTTGGCAATGCGCGGCCGCGGAACAAGAACAAAGGCAGAGGACCACCTAGGGTTCCGGTGCCAGCGGCTCCCCCAAAGAAAGATAAGTTTGAGGACGATACCATTGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

118

Amino Acids

12.44

Weight (kDa)

10.0

Isoelectric Point (pI)

64.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPS31	PF17067	1 - 100	9.6e-41	Ribosomal protein S31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38140
fragaria_vesca	FvH4_6g11721 FvH4_6g11730
malus_domestica	MD04G1149600.v1.1 MD12G1164000.v1.1 MD12G1164100.v1.1
prunus_persica	Prupe.6G274500_v2.0.a1 Prupe.6G274500_v2.0.a1 Prupe.6G274600_v2.0.a1
pyrus_communis	pycom04g13510 pycom04g13520 pycom12g15680
rosa_chinensis	RchiOBHm_Chr3g0463501 RchiOBHm_Chr3g0463511
rosa_laevigata	RLG00000024782
rosa_multiflora	Rmu_sc0000923.1_g000021
rosa_roxburghii	Rroxscaffold_6G00416500 Rroxscaffold_6G00416510
rosa_rugosa	Rorug03G0065200 Rorug03G0065300
rosa_samantha	Rh3AG122400 Rh3AG122500 Rh3BG127100 Rh3BG127200 Rh3CG129000 Rh3CG129100 Rh3DG127900 Rh3DG128000
rosa_wichuraiana	Rw0G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccII	CGCG	2 cut(s)	229, 235
AciI	CCGC	6 cut(s)	61, 168, 229, 233, 235, 281
AcoI	YGGCCR	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	164
AfeI	AGCGCT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	208, 332
AluBI	AGCT	3 cut(s)	23, 57, 137
AluI	AGCT	3 cut(s)	23, 57, 137
Alw21I	GWGCWC	1 cut(s)	25
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	1 cut(s)	230
AspA2I	CCTAGG	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	204, 229
AspS9I	GGNCC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	89, 264
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	4 cut(s)	169, 230, 233, 282
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	4 cut(s)	170, 231, 234, 283
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	3 cut(s)	270, 276, 285
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	233, 263
BsaWI	WCCGGW	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	233, 263
BseMI	GCAATG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	97
BseX3I	CGGCCG	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	229, 235
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	25
BspACI	CCGC	6 cut(s)	61, 168, 229, 233, 235, 281
BspANI	GGCC	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	229, 235
BspLI	GGNNCC	3 cut(s)	270, 276, 285
BspT107I	GGYRCC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	233, 263
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	48, 279
BstDSI	CCRYGG	1 cut(s)	233
BstFNI	CGCG	2 cut(s)	229, 235
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	204, 229
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 174
BstUI	CGCG	2 cut(s)	229, 235
BstZI	CGGCCG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	8, 111, 165
Cac8I	GCNNGC	2 cut(s)	48, 279
CciNI	GCGGCCGC	1 cut(s)	230
CfoI	GCGC	2 cut(s)	204, 229
Cfr13I	GGNCC	1 cut(s)	257
Cfr42I	CCGCGG	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	7 cut(s)	23, 32, 57, 92, 137, 232, 284
CviKI_1	RGCY	7 cut(s)	23, 32, 57, 92, 137, 232, 284
CviQI	GTAC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	230
EagI	CGGCCG	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	23
EclXI	CGGCCG	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	257
Eco47III	AGCGCT	1 cut(s)	203
Eco52I	CGGCCG	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	263
FaqI	GGGAC	1 cut(s)	137
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	4 cut(s)	169, 230, 233, 282
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	169, 230, 233, 282
FspBI	CTAG	2 cut(s)	89, 264
GlaI	GCGC	2 cut(s)	203, 228
GluI	GCNGC	4 cut(s)	169, 230, 233, 282
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	2 cut(s)	204, 229
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	2 cut(s)	202, 227
HinP1I	GCGC	2 cut(s)	202, 227
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	20, 82
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 174
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	2 cut(s)	202, 227
KspI	CCGCGG	1 cut(s)	236
LmnI	GCTCC	4 cut(s)	20, 28, 62, 289
LpnPI	CCDG	4 cut(s)	42, 162, 285, 291
MaeI	CTAG	2 cut(s)	89, 264
MaeIII	GTNAC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	6 cut(s)	48, 115, 118, 167, 248, 301
MseI	TTAA	1 cut(s)	352
MspA1I	CMGCKG	2 cut(s)	235, 281
MspI	CCGG	1 cut(s)	272
MvnI	CGCG	2 cut(s)	229, 235
MwoI	GCNNNNNNNGC	2 cut(s)	29, 174
NlaIV	GGNNCC	3 cut(s)	270, 276, 285
NmuCI	GTSAC	1 cut(s)	6
NotI	GCGGCCGC	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	170, 231, 234, 283
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	270, 276, 285
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	25
SacII	CCGCGG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	4 cut(s)	169, 230, 233, 282
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	5 cut(s)	25, 59, 139, 265, 330
Sfr303I	CCGCGG	1 cut(s)	236
SgrBI	CCGCGG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	6 cut(s)	61, 168, 229, 233, 235, 281
SspMI	CTAG	2 cut(s)	89, 264
SstI	GAGCTC	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	1 cut(s)	333
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	4 cut(s)	171, 232, 235, 284
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TscAI	CASTG	3 cut(s)	15, 118, 165
TseFI	GTSAC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	6
TspRI	CASTG	3 cut(s)	15, 118, 165
VpaK11BI	GGWCC	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	263
XspI	CTAG	2 cut(s)	89, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.