Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00452

Orthogroup ID

OG0005476

Physical Location & Seq

Genomic Coordinates Forward (+)

169338 .. 169910

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTTCACTCATACTCGGAGCTCTCCCTATCCCCTCCCAATCGCTCGCTCTGAACTCTCGCATTTCGTTTTCTCAATCCGAAACCCTAGCCGTTTCACTTCCTTCTCCCACTGCTTCGCTCTCAATTTCCACCGCTACTTCTCCCTCAGTCCCTTCAGTGTACTGTGGCAGAGGCGATAAGAAAACCGAAAGAGGAAAGCGTTTCAATCACTCTTTCGGAAATGCGAGGCCAAGGAACAAGAAGAAAGGGAGAGGACCGCCTAGGGTTCCGGTACCGGCGGCTCCGCCTAAGAAAGATAAGTTTGAGGACGATTCGGTCGTCAAGGTTGAAATTGATGAGTCCTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

117

Amino Acids

12.45

Weight (kDa)

10.08

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPS31	PF17067	1 - 100	2.1e-38	Ribosomal protein S31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38140
fragaria_vesca	FvH4_6g11721 FvH4_6g11730
malus_domestica	MD04G1149600.v1.1 MD12G1164000.v1.1 MD12G1164100.v1.1
prunus_persica	Prupe.6G274500_v2.0.a1 Prupe.6G274500_v2.0.a1 Prupe.6G274600_v2.0.a1
pyrus_communis	pycom04g13510 pycom04g13520 pycom12g15680
rosa_chinensis	RchiOBHm_Chr3g0463501 RchiOBHm_Chr3g0463511
rosa_laevigata	RLG00000024782
rosa_multiflora	Rmu_sc0000923.1_g000021
rosa_roxburghii	Rroxscaffold_6G00416500 Rroxscaffold_6G00416510
rosa_rugosa	Rorug03G0065200 Rorug03G0065300
rosa_samantha	Rh3AG122400 Rh3AG122500 Rh3BG127100 Rh3BG127200 Rh3CG129000 Rh3CG129100 Rh3DG127900 Rh3DG128000
rosa_wichuraiana	Rw0G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	274
AciI	CCGC	4 cut(s)	135, 260, 281, 287
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	164, 276
AgsI	TTSAA	2 cut(s)	208, 332
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	230
Asp718I	GGTACC	1 cut(s)	274
AspA2I	CCTAGG	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	89, 264
BisI	GCNGC	1 cut(s)	282
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	3 cut(s)	270, 276, 285
BsaJI	CCNNGG	2 cut(s)	233, 263
BsaWI	WCCGGW	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	233, 263
BseMII	CTCAG	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	272, 278
BslFI	GGGAC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	25
BspACI	CCGC	4 cut(s)	135, 260, 281, 287
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	161
BspLI	GGNNCC	3 cut(s)	270, 276, 285
BspT107I	GGYRCC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	233, 263
BssT1I	CCWWGG	2 cut(s)	233, 263
Bst4CI	ACNGT	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	148, 291, 351
BstMCI	CGRYCG	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 165
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	163, 275
CviJI	RGCY	5 cut(s)	5, 23, 92, 232, 284
CviKI_1	RGCY	5 cut(s)	5, 23, 92, 232, 284
CviQI	GTAC	2 cut(s)	163, 275
DdeI	CTNAG	3 cut(s)	148, 291, 351
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EciI	GGCGGA	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	233, 263
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	23
EcoT14I	CCWWGG	2 cut(s)	233, 263
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	233, 263
FaiI	YATR	1 cut(s)	14
FaqI	GGGAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	2 cut(s)	89, 264
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	2 cut(s)	272, 278
HinfI	GANTC	2 cut(s)	314, 341
HpaII	CCGG	2 cut(s)	272, 278
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	20, 54, 82, 221
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	114, 165
HpyCH4III	ACNGT	1 cut(s)	167
HpyF3I	CTNAG	3 cut(s)	148, 291, 351
KpnI	GGTACC	1 cut(s)	278
LmnI	GCTCC	2 cut(s)	20, 289
LpnPI	CCDG	2 cut(s)	285, 291
MaeI	CTAG	2 cut(s)	89, 264
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	2 cut(s)	126, 333
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	7 cut(s)	46, 157, 167, 188, 222, 248, 301
MspI	CCGG	2 cut(s)	272, 278
NlaIV	GGNNCC	3 cut(s)	270, 276, 285
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	270, 276, 285
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	2 cut(s)	164, 276
RsaNI	GTAC	2 cut(s)	163, 275
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	2 cut(s)	25, 330
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	2 cut(s)	126, 333
SsiI	CCGC	4 cut(s)	135, 260, 281, 287
SspMI	CTAG	2 cut(s)	89, 264
SstI	GAGCTC	1 cut(s)	25
StyI	CCWWGG	2 cut(s)	233, 263
TaaI	ACNGT	1 cut(s)	167
TaqII	GACCGA	1 cut(s)	307
TasI	AATT	2 cut(s)	126, 333
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	2 cut(s)	118, 165
TspRI	CASTG	2 cut(s)	118, 165
VpaK11BI	GGWCC	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	263
XspI	CTAG	2 cut(s)	89, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.