Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005476

Physical Location & Seq

Genomic Coordinates Forward (+)

25917544 .. 25918158

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G274600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAATTCATCGGAAATAACCGAAGAGAAGGATGATGATAGCAGTTGCCTTGTTGATCCAGAAGTTCAAAAAGAAAGGATAAGGCAGATTATAGAGTATCAGAAATCTCTTTATCGGTCTTCATCTTCGTCTTCTTCCTCCTCTTCCTCAGCTGCTTCCTGTTCCTCGTTTTCTTCAGCTCGAAAAAGTAGCAGTTTGTTAGGTTTGATGAAAGTAGGAAACACATCGTTGAGGAGATTATTTGACATGGAGCATACAAGTTTGGCGAACCATTTTGAGGATTTCAGTGGCTCATCCATAATTAAGCCTATTCTTCTATGGGGCAGTGATACAGACAATGAAAATGAAATGCATGATCCATGGCAATCCATCAAGCAGTTTGGACCAATAAATGAATCTAGGATTGATGGACCAAGTAAGTTTCCTTCAGATGGTAGCTTCCGGGATGGAGAGCGTGGCTTCCGGAATACAGAGGTAAGAATTGGCAACCGCAAGCTGACTAGGAAAAAGTCATTTAGGAGATTGCCCGGATTTGGGTTATGGAGATGCAGAGGATTTAGATTGAGATTAAGATTGAGGCGGCTTAGGATTGCTTTTTGTGGAAGAAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

23.33

Weight (kDa)

9.86

Isoelectric Point (pI)

62.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38140
fragaria_vesca	FvH4_6g11721 FvH4_6g11730
malus_domestica	MD04G1149600.v1.1 MD12G1164000.v1.1 MD12G1164100.v1.1
prunus_persica	Prupe.6G274500_v2.0.a1 Prupe.6G274500_v2.0.a1 Prupe.6G274600_v2.0.a1
pyrus_communis	pycom04g13510 pycom04g13520 pycom12g15680
rosa_chinensis	RchiOBHm_Chr3g0463501 RchiOBHm_Chr3g0463511
rosa_laevigata	RLG00000024782
rosa_multiflora	Rmu_sc0000923.1_g000021
rosa_roxburghii	Rroxscaffold_6G00416500 Rroxscaffold_6G00416510
rosa_rugosa	Rorug03G0065200 Rorug03G0065300
rosa_samantha	Rh3AG122400 Rh3AG122500 Rh3BG127100 Rh3BG127200 Rh3CG129000 Rh3CG129100 Rh3DG127900 Rh3DG128000
rosa_wichuraiana	Rw0G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	462
AciI	CCGC	2 cut(s)	490, 580
AclWI	GGATC	2 cut(s)	50, 350
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	159, 411
AfiI	CCNNNNNNNGG	4 cut(s)	277, 431, 533, 534
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	4 cut(s)	152, 179, 438, 496
AluI	AGCT	4 cut(s)	152, 179, 438, 496
AlwI	GGATC	2 cut(s)	50, 350
Aor13HI	TCCGGA	1 cut(s)	462
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	383, 410
AsuC2I	CCSGG	2 cut(s)	443, 528
AvaII	GGWCC	2 cut(s)	383, 410
BarI	GAAGNNNNNNTAC	2 cut(s)	409, 441
BbsI	GAAGAC	2 cut(s)	111, 123
BbvCI	CCTCAGC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	4 cut(s)	377, 401, 425, 440
BcnI	CCSGG	2 cut(s)	443, 528
BfaI	CTAG	2 cut(s)	399, 501
BisI	GCNGC	2 cut(s)	153, 581
BlsI	GCNGC	2 cut(s)	154, 582
Bme1390I	CCNGG	2 cut(s)	443, 528
Bme18I	GGWCC	2 cut(s)	383, 410
BmgT120I	GGNCC	2 cut(s)	383, 410
BmrFI	CCNGG	2 cut(s)	443, 528
BmsI	GCATC	1 cut(s)	536
BpiI	GAAGAC	2 cut(s)	111, 123
Bpu10I	CCTNAGC	2 cut(s)	148, 584
BpuMI	CCSGG	2 cut(s)	443, 528
BsaJI	CCNNGG	1 cut(s)	359
BsaWI	WCCGGW	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 431, 533, 534
BseAI	TCCGGA	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	3 cut(s)	37, 293, 451
BseLI	CCNNNNNNNGG	4 cut(s)	277, 431, 533, 534
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	2 cut(s)	130, 247
BseXI	GCAGC	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	442, 463, 528
BslI	CCNNNNNNNGG	4 cut(s)	277, 431, 533, 534
Bsp13I	TCCGGA	1 cut(s)	462
Bsp143I	GATC	2 cut(s)	55, 355
Bsp19I	CCATGG	1 cut(s)	359
BspACI	CCGC	2 cut(s)	490, 580
BspCNI	CTCAG	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	462
BspPI	GGATC	2 cut(s)	50, 350
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	55, 355
BssT1I	CCWWGG	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	18, 148
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	148, 584
BstDSI	CCRYGG	1 cut(s)	359
BstF5I	GGATG	3 cut(s)	37, 293, 451
BstKTI	GATC	2 cut(s)	58, 358
BstMBI	GATC	2 cut(s)	55, 355
BstSCI	CCNGG	2 cut(s)	441, 526
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	111, 123
BtgI	CCRYGG	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	37, 293, 451
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	292, 331
Cac8I	GCNNGC	1 cut(s)	494
Cfr13I	GGNCC	2 cut(s)	383, 410
CviAII	CATG	3 cut(s)	247, 353, 360
CviJI	RGCY	8 cut(s)	152, 179, 291, 307, 438, 459, 496, 583
CviKI_1	RGCY	8 cut(s)	152, 179, 291, 307, 438, 459, 496, 583
DdeI	CTNAG	2 cut(s)	148, 584
DpnI	GATC	2 cut(s)	57, 357
DpnII	GATC	2 cut(s)	55, 355
Eam1104I	CTCTTC	2 cut(s)	18, 148
EarI	CTCTTC	2 cut(s)	18, 148
Eco130I	CCWWGG	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	383, 410
Eco57I	CTGAAG	2 cut(s)	159, 411
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	359
EcoT22I	ATGCAT	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	3 cut(s)	250, 356, 363
FaiI	YATR	8 cut(s)	92, 248, 255, 299, 319, 354, 361, 541
FatI	CATG	3 cut(s)	246, 352, 359
Fnu4HI	GCNGC	2 cut(s)	153, 581
FokI	GGATG	3 cut(s)	44, 280, 458
Fsp4HI	GCNGC	2 cut(s)	153, 581
FspBI	CTAG	2 cut(s)	399, 501
GluI	GCNGC	2 cut(s)	153, 581
HapII	CCGG	3 cut(s)	442, 463, 528
Hin1II	CATG	3 cut(s)	250, 356, 363
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	3 cut(s)	442, 463, 528
Hpy188I	TCNGA	3 cut(s)	13, 102, 430
Hpy188III	TCNNGA	2 cut(s)	59, 463
HpyAV	CCTTC	2 cut(s)	22, 435
HpyCH4V	TGCA	2 cut(s)	352, 549
HpyF3I	CTNAG	2 cut(s)	148, 584
Hsp92II	CATG	3 cut(s)	250, 356, 363
Kpn2I	TCCGGA	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	55, 355
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	72, 172, 455, 476, 541
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	536
MaeI	CTAG	2 cut(s)	399, 501
MalI	GATC	2 cut(s)	57, 357
MboI	GATC	2 cut(s)	55, 355
MboII	GAAGA	9 cut(s)	35, 111, 117, 123, 126, 135, 165, 305, 615
MluCI	AATT	3 cut(s)	4, 300, 480
MnlI	CCTC	9 cut(s)	148, 151, 157, 175, 225, 271, 466, 545, 570
Mph1103I	ATGCAT	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	462
MseI	TTAA	2 cut(s)	303, 569
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	3 cut(s)	442, 463, 528
MspR9I	CCNGG	2 cut(s)	443, 528
NciI	CCSGG	2 cut(s)	443, 528
NcoI	CCATGG	1 cut(s)	359
NdeII	GATC	2 cut(s)	55, 355
NlaIII	CATG	3 cut(s)	250, 356, 363
NsiI	ATGCAT	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	395
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	154, 582
PspPI	GGNCC	2 cut(s)	383, 410
PvuII	CAGCTG	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	303, 569
SatI	GCNGC	2 cut(s)	153, 581
Sau3AI	GATC	2 cut(s)	55, 355
Sau96I	GGNCC	2 cut(s)	383, 410
ScrFI	CCNGG	2 cut(s)	443, 528
SetI	ASST	6 cut(s)	154, 181, 205, 440, 477, 498
SfaNI	GCATC	1 cut(s)	536
SinI	GGWCC	2 cut(s)	383, 410
Sse9I	AATT	3 cut(s)	4, 300, 480
SsiI	CCGC	2 cut(s)	490, 580
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	2 cut(s)	399, 501
StyD4I	CCNGG	2 cut(s)	441, 526
StyI	CCWWGG	1 cut(s)	359
TaqI	TCGA	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	4, 300, 480
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	303, 569
Tru9I	TTAA	2 cut(s)	303, 569
TscAI	CASTG	2 cut(s)	292, 331
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	6 cut(s)	17, 111, 224, 354, 360, 408
TspRI	CASTG	2 cut(s)	292, 331
VpaK11BI	GGWCC	2 cut(s)	383, 410
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	2 cut(s)	399, 501
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.