Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005476

Physical Location & Seq

Genomic Coordinates Forward (+)

16570915 .. 16571535

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGTTTGTCGGAAATAACCGAAGAGAAGGATGATGATGAGATCGGGCTTTTTGCTGATCCAGAAGCTCAGAAGGAGAGGATAAGGCGGATTATAGAGTATCAGAAGTCGCTTCATCAGTCTTCATCTTCTTTGTCTTCCTTGTCTTCCTCTTCTGCTTCCTGTTCCTCATTTTCTTCAGCTCGAAGAAGTAGCAGTTTGTTAGGTTTGATGAAAGTAGGAAACACATCTTTGAGCAGATTGTTTGACATGGAGCATACGAGTTTGGGGAACCATTTCGAGGATTTCAGTGGATCCTCGATAGTTAAGCCTATCCTTCTATGGGGCAGTGATACAGACAATGAGAACGAAACCCGTCACCCCTGGGAATCCATCAAACAGCTTAGACCAATAAAGGGTTCTAGGATTGGTGATGGACAGGATAAGTTTGCTTCAGATGGTAGCTTCTTGGGTGGAGATTATGGCTTTCGGGATAAAGCTGTGAGAATTGGCGCCCGCAGATTTACTAGGACAAAGTCGTTTAGAAGATTGCCAGGATTTGGATTATGGAGATGCAAAGGATTTAGATTTAGATTGAGATTACGGCGGCTTAGGATCGCTTTTAGTAGAAGAAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.41

Weight (kDa)

10.11

Isoelectric Point (pI)

62.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38140
fragaria_vesca	FvH4_6g11721 FvH4_6g11730
malus_domestica	MD04G1149600.v1.1 MD12G1164000.v1.1 MD12G1164100.v1.1
prunus_persica	Prupe.6G274500_v2.0.a1 Prupe.6G274500_v2.0.a1 Prupe.6G274600_v2.0.a1
pyrus_communis	pycom04g13510 pycom04g13520 pycom12g15680
rosa_chinensis	RchiOBHm_Chr3g0463501 RchiOBHm_Chr3g0463511
rosa_laevigata	RLG00000024782
rosa_multiflora	Rmu_sc0000923.1_g000021
rosa_roxburghii	Rroxscaffold_6G00416500 Rroxscaffold_6G00416510
rosa_rugosa	Rorug03G0065200 Rorug03G0065300
rosa_samantha	Rh3AG122400 Rh3AG122500 Rh3BG127100 Rh3BG127200 Rh3CG129000 Rh3CG129100 Rh3DG127900 Rh3DG128000
rosa_wichuraiana	Rw0G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AccB7I	CCANNNNNTGG	1 cut(s)	539
AciI	CCGC	3 cut(s)	88, 496, 586
AclWI	GGATC	4 cut(s)	53, 288, 301, 602
AcuI	CTGAAG	2 cut(s)	162, 417
AcyI	GRCGYC	1 cut(s)	492
AfiI	CCNNNNNNNGG	4 cut(s)	280, 322, 395, 539
AjnI	CCWGG	2 cut(s)	362, 532
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AluBI	AGCT	5 cut(s)	68, 182, 382, 444, 479
AluI	AGCT	5 cut(s)	68, 182, 382, 444, 479
AlwI	GGATC	4 cut(s)	53, 288, 301, 602
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	350, 422
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	491
BbsI	GAAGAC	3 cut(s)	114, 129, 138
BccI	CCATC	3 cut(s)	380, 407, 431
BceAI	ACGGC	1 cut(s)	599
BciT130I	CCWGG	2 cut(s)	364, 534
BfaI	CTAG	2 cut(s)	402, 507
BfoI	RGCGCY	1 cut(s)	495
BisI	GCNGC	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	588
Bme1390I	CCNGG	2 cut(s)	364, 534
BmiI	GGNNCC	3 cut(s)	272, 295, 493
BmrFI	CCNGG	2 cut(s)	364, 534
BmsI	GCATC	1 cut(s)	542
BpiI	GAAGAC	3 cut(s)	114, 129, 138
Bpu10I	CCTNAGC	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	362, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 322, 395, 539
BseBI	CCWGG	2 cut(s)	364, 534
BseDI	CCNNGG	2 cut(s)	362, 363
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	4 cut(s)	280, 322, 395, 539
BseMII	CTCAG	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	491
BslI	CCNNNNNNNGG	4 cut(s)	280, 322, 395, 539
Bsp143I	GATC	4 cut(s)	42, 58, 293, 594
BspACI	CCGC	3 cut(s)	88, 496, 586
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	3 cut(s)	272, 295, 493
BspPI	GGATC	4 cut(s)	53, 288, 301, 602
BspT107I	GGYRCC	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	362, 363
BssMI	GATC	4 cut(s)	42, 58, 293, 594
BssNI	GRCGYC	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	364, 534
Bst6I	CTCTTC	2 cut(s)	18, 157
BstACI	GRCGYC	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	69, 383, 590
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	4 cut(s)	45, 61, 296, 597
BstMBI	GATC	4 cut(s)	42, 58, 293, 594
BstNI	CCWGG	2 cut(s)	364, 534
BstSCI	CCNGG	2 cut(s)	362, 532
BstV2I	GAAGAC	3 cut(s)	114, 129, 138
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	295, 334
Cac8I	GCNNGC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	494
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	9 cut(s)	49, 68, 182, 310, 382, 444, 465, 479, 589
CviKI_1	RGCY	9 cut(s)	49, 68, 182, 310, 382, 444, 465, 479, 589
DdeI	CTNAG	3 cut(s)	69, 383, 590
DinI	GGCGCC	1 cut(s)	493
DpnI	GATC	4 cut(s)	44, 60, 295, 596
DpnII	GATC	4 cut(s)	42, 58, 293, 594
Eam1104I	CTCTTC	2 cut(s)	18, 157
EarI	CTCTTC	2 cut(s)	18, 157
EciI	GGCGGA	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	162, 417
EcoRII	CCWGG	2 cut(s)	362, 532
EgeI	GGCGCC	1 cut(s)	493
EheI	GGCGCC	1 cut(s)	493
FaeI	CATG	1 cut(s)	253
FaiI	YATR	6 cut(s)	95, 251, 258, 322, 462, 547
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	503
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	2 cut(s)	402, 507
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	1 cut(s)	587
HaeII	RGCGCY	1 cut(s)	495
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	2 cut(s)	350, 422
Hpy188I	TCNGA	4 cut(s)	13, 72, 105, 436
Hpy188III	TCNNGA	2 cut(s)	62, 470
HpyAV	CCTTC	3 cut(s)	22, 67, 326
HpyCH4V	TGCA	1 cut(s)	555
HpyF3I	CTNAG	3 cut(s)	69, 383, 590
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	492
KasI	GGCGCC	1 cut(s)	491
Kzo9I	GATC	4 cut(s)	42, 58, 293, 594
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	7 cut(s)	75, 175, 349, 376, 404, 519, 546
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	2 cut(s)	402, 507
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	4 cut(s)	44, 60, 295, 596
MboI	GATC	4 cut(s)	42, 58, 293, 594
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	1 cut(s)	486
Mly113I	GGCGCC	1 cut(s)	492
MnlI	CCTC	5 cut(s)	72, 160, 178, 274, 307
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	364, 534
MvaI	CCWGG	2 cut(s)	364, 534
NarI	GGCGCC	1 cut(s)	492
NdeII	GATC	4 cut(s)	42, 58, 293, 594
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	3 cut(s)	272, 295, 493
NmuCI	GTSAC	1 cut(s)	356
PasI	CCCWGGG	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	368
PflFI	GACNNNGTC	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	588
PluTI	GGCGCC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	362, 532
PspGI	CCWGG	2 cut(s)	362, 532
PspN4I	GGNNCC	3 cut(s)	272, 295, 493
PsuI	RGATCY	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	4 cut(s)	42, 58, 293, 594
ScrFI	CCNGG	2 cut(s)	364, 534
SetI	ASST	6 cut(s)	70, 184, 208, 384, 446, 481
SfaNI	GCATC	1 cut(s)	542
SfoI	GGCGCC	1 cut(s)	493
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	3 cut(s)	88, 496, 586
SspDI	GGCGCC	1 cut(s)	491
SspMI	CTAG	2 cut(s)	402, 507
StyD4I	CCNGG	2 cut(s)	362, 532
TaqI	TCGA	3 cut(s)	184, 279, 299
TasI	AATT	1 cut(s)	486
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	295, 334
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	104, 114, 227
TspRI	CASTG	2 cut(s)	295, 334
Tth111I	GACNNNGTC	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	2 cut(s)	402, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.