AT2G38152

Glycosyltransferase sugar-binding region containing DXD motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013878
Physical Location & Seq
Reverse (-)
15984061 .. 15985278
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38152.1

Sequence Viewer

Length: 1143 bp
ATGGAGAAGGATAATTGTAACAAGAAGAGTCTCTCAGAAGTACTTGATGTCCGGCAATTCAGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTTGCGGTCATAATGCTGCTCGTTGTCGCGGGAACAATCCTCTCAAACATGTCCCTAAAATCAACTTTCTTCTGGTCTTCACCAACCTCCGAGGTAATACAAACAAACAGAATGGAGAGGAAGTCATTGGCTCCTCCAAAGAACACTACAAGCAGAGACAGGATCGCTTGGCTTCACTCACATCTAACAGAATTCGAGGTTAGATTCTTCATGACATGGTTTTCACCAGCAGAGTATTTTGGGAAAAGAGAAATGTTAGCTGTAGAAAGCGTCTTTAAAGCTCATCCTCAAGGATGCTTAATGATTGTATCAGGATCCTTGGATTCCTTACAAGGAGATAGCATCCTAAAGCCGCTAAATGATCGCGGTTACAAAGTTTTTGCAGCCACACCAGACATGTCATTGCTTCTTGAGAACACACCGGCCAAATCTTGGTTTCAAGAAATGAAAAGTTGCAAAAGAGATCCAGGAAGGATACCGTTACATCAGAATCTTTCAAACCTCGCGAGGCTAGCGTTTCTTTACAAGTACGGAGGTGTGTATCTAGATACCGATTTCATCGTCACAAGAAGCTTTAAAGGGTTGAAGAATTCAATAGGAGCACAAACAGTAGTGGAAGGAGATTCAAAGAACTGGACAAGGTTGAACAATGCGGTTCTGATCTTCGAGAAAGATCACCCGCTTGTTTACAGTTTCATAGAGGAGTTTGCTTCTACCTTTGATGGGAACAAATGGGGACACAATGGTCCTTACTTGGTAACAAGAGTAGCACAAAGAGCACGAGAAACGATTGGGGATAATTTCACAGTACTGCCACCAGTAGCATTCTATCCATTCAATTGGTTAGACATTCCAAGACTGTTTCAAACGCCGAGAGGAAGCAATGACTCAACGTTACTCAAAACCGATCTGGTGAAGCTGAATAGAGAAAGCTATGGGCTTCATCTATGGAACAAAATCACCAGAAAACTGAAGATCGGTAAGGGCAGTGTCATAGACATCATAATTTCAGACCACTGTGTTGTTTGCAGAGGAATTCAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

380

Amino Acids

43.26

Weight (kDa)

9.44

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 114 - 236 2.1e-24 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 254 - 375 4.7e-29 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38152
fragaria_vesca FvH4_6g11720
malus_domestica MD04G1149800.v1.1 MD12G1164200.v1.1
prunus_persica Prupe.6G274700_v2.0.a1
pyrus_communis pycom04g13530
rosa_chinensis RchiOBHm_Chr3g0463491
rosa_laevigata RLG00000019555 RLG00000024783
rosa_multiflora Rmu_sc0000923.1_g000020
rosa_roxburghii Rroxscaffold_6G00416520
rosa_rugosa Rorug03G0065100
rosa_samantha Rh3AG122300 Rh3BG127000 Rh3CG128900 Rh3DG127800
rosa_wichuraiana Rw0G010600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 840
AccB7I CCANNNNNTGG 1 cut(s) 528
AccII CGCG 3 cut(s) 125, 462, 602
AciI CCGC 7 cut(s) 90, 101, 125, 449, 462, 749, 776
AclI AACGTT 1 cut(s) 989
AclWI GGATC 4 cut(s) 266, 405, 418, 554
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 4 cut(s) 70, 287, 685, 1131
AcuI CTGAAG 1 cut(s) 1088
AfaI GTAC 3 cut(s) 42, 626, 906
AfiI CCNNNNNNNGG 2 cut(s) 528, 819
AflIII ACRYGT 2 cut(s) 144, 492
AgsI TTSAA 8 cut(s) 536, 594, 682, 690, 723, 742, 934, 962
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 5 cut(s) 356, 377, 669, 1015, 1029
AluI AGCT 5 cut(s) 356, 377, 669, 1015, 1029
Alw21I GWGCWC 2 cut(s) 700, 877
Alw26I GTCTC 2 cut(s) 35, 246
AlwI GGATC 4 cut(s) 266, 405, 418, 554
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 2 cut(s) 112, 479
ApoI RAATTY 4 cut(s) 70, 287, 685, 1131
AspS9I GGNCC 1 cut(s) 842
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 5 cut(s) 168, 312, 764, 1021, 1048
AsuNHI GCTAGC 1 cut(s) 607
AvaII GGWCC 1 cut(s) 842
BamHI GGATCC 1 cut(s) 410
BauI CACGAG 1 cut(s) 876
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 700, 877
BbvI GCAGC 2 cut(s) 99, 491
BccI CCATC 1 cut(s) 812
BciT130I CCWGG 1 cut(s) 564
BciVI GTATCC 1 cut(s) 564
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 35, 246
BfaI CTAG 2 cut(s) 608, 641
BfmI CTRYAG 1 cut(s) 357
BfuI GTATCC 1 cut(s) 564
BisI GCNGC 3 cut(s) 113, 449, 480
BlsI GCNGC 3 cut(s) 114, 450, 481
BmcAI AGTACT 2 cut(s) 42, 906
Bme1390I CCNGG 2 cut(s) 77, 564
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 2 cut(s) 228, 412
BmrFI CCNGG 2 cut(s) 77, 564
BmsI GCATC 2 cut(s) 380, 447
BmtI GCTAGC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 369, 527
BpuMI CCSGG 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 75, 186, 414
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 528, 819
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 734, 914
Bse3DI GCAATG 2 cut(s) 497, 985
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 3 cut(s) 75, 186, 414
BseGI GGATG 3 cut(s) 379, 395, 438
BseLI CCNNNNNNNGG 2 cut(s) 528, 819
BseMI GCAATG 2 cut(s) 497, 985
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 734, 914
BseRI GAGGAG 2 cut(s) 219, 812
BseXI GCAGC 2 cut(s) 99, 491
Bsh1236I CGCG 3 cut(s) 125, 462, 602
BshFI GGCC 1 cut(s) 521
BsiHKAI GWGCWC 2 cut(s) 700, 877
BsiSI CCGG 3 cut(s) 52, 77, 518
BslFI GGGAC 2 cut(s) 133, 846
BslI CCNNNNNNNGG 2 cut(s) 528, 819
BsmAI GTCTC 2 cut(s) 35, 246
BsmFI GGGAC 2 cut(s) 133, 846
BsmI GAATGC 1 cut(s) 920
BsnI GGCC 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 700, 877
Bsp143I GATC 8 cut(s) 258, 410, 457, 559, 756, 769, 1003, 1071
Bsp68I TCGCGA 1 cut(s) 602
BspACI CCGC 7 cut(s) 90, 101, 125, 449, 462, 749, 776
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 47
BspFNI CGCG 3 cut(s) 125, 462, 602
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 228, 412
BspOI GCTAGC 1 cut(s) 611
BspPI GGATC 4 cut(s) 266, 405, 418, 554
BsrDI GCAATG 2 cut(s) 497, 985
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 2 cut(s) 734, 914
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 3 cut(s) 75, 186, 414
BssMI GATC 8 cut(s) 258, 410, 457, 559, 756, 769, 1003, 1071
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 6 cut(s) 576, 706, 788, 904, 957, 1115
Bst6I CTCTTC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 3 cut(s) 379, 395, 438
BstFNI CGCG 3 cut(s) 125, 462, 602
BstKTI GATC 8 cut(s) 261, 413, 460, 562, 759, 772, 1006, 1074
BstMAI GTCTC 2 cut(s) 35, 246
BstMBI GATC 8 cut(s) 258, 410, 457, 559, 756, 769, 1003, 1071
BstMWI GCNNNNNNNGC 4 cut(s) 61, 98, 608, 872
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 2 cut(s) 148, 496
BstSCI CCNGG 2 cut(s) 75, 562
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 3 cut(s) 125, 462, 602
BstV1I GCAGC 2 cut(s) 99, 491
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 410, 559
BstXI CCANNNNNNTGG 1 cut(s) 936
BstYI RGATCY 2 cut(s) 410, 559
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 3 cut(s) 379, 395, 438
BtsI GCAGTG 1 cut(s) 1090
BtsIMutI CAGTG 2 cut(s) 1090, 1111
BtuMI TCGCGA 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 609
CciI TCATGA 1 cut(s) 306
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 842
CseI GACGC 1 cut(s) 355
Csp6I GTAC 3 cut(s) 41, 625, 905
CviAII CATG 4 cut(s) 145, 307, 312, 493
CviQI GTAC 3 cut(s) 41, 625, 905
DdeI CTNAG 1 cut(s) 34
DpnI GATC 8 cut(s) 260, 412, 459, 561, 758, 771, 1005, 1073
DpnII GATC 8 cut(s) 258, 410, 457, 559, 756, 769, 1003, 1071
DraI TTTAAA 2 cut(s) 373, 673
DrdI GACNNNNNNGTC 1 cut(s) 840
DseDI GACNNNNNNGTC 1 cut(s) 840
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 1 cut(s) 1088
EcoRI GAATTC 4 cut(s) 70, 287, 685, 1131
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 4 cut(s) 148, 310, 315, 496
FaqI GGGAC 2 cut(s) 133, 846
FatI CATG 4 cut(s) 144, 306, 311, 492
FauI CCCGC 2 cut(s) 118, 783
Fnu4HI GCNGC 3 cut(s) 113, 449, 480
FokI GGATG 3 cut(s) 366, 402, 425
Fsp4HI GCNGC 3 cut(s) 113, 449, 480
FspBI CTAG 2 cut(s) 608, 641
GluI GCNGC 3 cut(s) 113, 449, 480
HaeIII GGCC 1 cut(s) 521
HapII CCGG 3 cut(s) 52, 77, 518
HgaI GACGC 1 cut(s) 355
Hin1II CATG 4 cut(s) 148, 310, 315, 496
HindIII AAGCTT 1 cut(s) 667
HinfI GANTC 6 cut(s) 28, 300, 419, 586, 719, 983
HpaII CCGG 3 cut(s) 52, 77, 518
HphI GGTGA 5 cut(s) 168, 312, 764, 1021, 1048
Hpy166II GTNNAC 1 cut(s) 784
Hpy188I TCNGA 6 cut(s) 37, 187, 585, 756, 1108, 1137
Hpy188III TCNNGA 7 cut(s) 307, 408, 506, 536, 601, 641, 763
Hpy8I GTNNAC 1 cut(s) 784
HpyAV CCTTC 2 cut(s) 561, 707
HpyCH4III ACNGT 6 cut(s) 576, 706, 788, 904, 957, 1115
HpyCH4IV ACGT 1 cut(s) 989
HpyCH4V TGCA 3 cut(s) 479, 552, 1125
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 98, 608, 872
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 989
Hsp92II CATG 4 cut(s) 148, 310, 315, 496
Kzo9I GATC 8 cut(s) 258, 410, 457, 559, 756, 769, 1003, 1071
LmnI GCTCC 2 cut(s) 232, 695
Lsp1109I GCAGC 2 cut(s) 99, 491
LweI GCATC 2 cut(s) 380, 447
MaeI CTAG 2 cut(s) 608, 641
MaeII ACGT 1 cut(s) 989
MaeIII GTNAC 6 cut(s) 17, 464, 576, 658, 853, 990
MalI GATC 8 cut(s) 260, 412, 459, 561, 758, 771, 1005, 1073
MboI GATC 8 cut(s) 258, 410, 457, 559, 756, 769, 1003, 1071
MboII GAAGA 7 cut(s) 37, 157, 165, 295, 694, 751, 1081
MfeI CAATTG 1 cut(s) 934
MflI RGATCY 2 cut(s) 410, 559
MhlI GDGCHC 2 cut(s) 700, 877
MluCI AATT 9 cut(s) 13, 56, 70, 287, 685, 895, 934, 1101, 1131
MlyI GAGTC 2 cut(s) 37, 977
MseI TTAA 3 cut(s) 372, 395, 672
MspI CCGG 3 cut(s) 52, 77, 518
MspR9I CCNGG 2 cut(s) 77, 564
MunI CAATTG 1 cut(s) 934
Mva1269I GAATGC 1 cut(s) 920
MvaI CCWGG 1 cut(s) 564
MvnI CGCG 3 cut(s) 125, 462, 602
MwoI GCNNNNNNNGC 4 cut(s) 61, 98, 608, 872
NciI CCSGG 1 cut(s) 77
NdeII GATC 8 cut(s) 258, 410, 457, 559, 756, 769, 1003, 1071
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 4 cut(s) 148, 310, 315, 496
NlaIV GGNNCC 2 cut(s) 228, 412
NmeAIII GCCGAG 1 cut(s) 993
NmuCI GTSAC 1 cut(s) 658
NruI TCGCGA 1 cut(s) 602
NspI RCATGY 2 cut(s) 148, 496
PagI TCATGA 1 cut(s) 306
PciI ACATGT 2 cut(s) 144, 492
PctI GAATGC 1 cut(s) 920
PfeI GAWTC 4 cut(s) 300, 419, 586, 719
PflMI CCANNNNNTGG 1 cut(s) 528
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 3 cut(s) 114, 450, 481
PleI GAGTC 2 cut(s) 36, 977
PpsI GAGTC 2 cut(s) 36, 977
PscI ACATGT 2 cut(s) 144, 492
Psp1406I AACGTT 1 cut(s) 989
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 228, 412
PspPI GGNCC 1 cut(s) 842
PsuI RGATCY 2 cut(s) 410, 559
RruI TCGCGA 1 cut(s) 602
RsaI GTAC 3 cut(s) 42, 626, 906
RsaNI GTAC 3 cut(s) 41, 625, 905
SaqAI TTAA 3 cut(s) 372, 395, 672
SatI GCNGC 3 cut(s) 113, 449, 480
Sau3AI GATC 8 cut(s) 258, 410, 457, 559, 756, 769, 1003, 1071
Sau96I GGNCC 1 cut(s) 842
ScaI AGTACT 2 cut(s) 42, 906
SchI GAGTC 2 cut(s) 37, 977
ScrFI CCNGG 2 cut(s) 77, 564
SduI GDGCHC 2 cut(s) 700, 877
SfaNI GCATC 2 cut(s) 380, 447
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 842
SmlI CTYRAG 2 cut(s) 384, 506
SmoI CTYRAG 2 cut(s) 384, 506
Sse9I AATT 9 cut(s) 13, 56, 70, 287, 685, 895, 934, 1101, 1131
SsiI CCGC 7 cut(s) 90, 101, 125, 449, 462, 749, 776
SspMI CTAG 2 cut(s) 608, 641
StyD4I CCNGG 2 cut(s) 75, 562
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 6 cut(s) 576, 706, 788, 904, 957, 1115
TaiI ACGT 1 cut(s) 992
TaqI TCGA 2 cut(s) 291, 762
TasI AATT 9 cut(s) 13, 56, 70, 287, 685, 895, 934, 1101, 1131
TatI WGTACW 2 cut(s) 40, 904
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 4 cut(s) 300, 419, 586, 719
Tru1I TTAA 3 cut(s) 372, 395, 672
Tru9I TTAA 3 cut(s) 372, 395, 672
TscAI CASTG 2 cut(s) 1090, 1118
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 2 cut(s) 112, 479
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 5 cut(s) 295, 557, 643, 781, 1028
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 2 cut(s) 1090, 1118
Van91I CCANNNNNTGG 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 842
XapI RAATTY 4 cut(s) 70, 287, 685, 1131
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 2 cut(s) 148, 496
XspI CTAG 2 cut(s) 608, 641
ZrmI AGTACT 2 cut(s) 42, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.