Rorug03G0065100

Lactosylceramide 4-alpha-galactosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013878
Physical Location & Seq
Reverse (-)
4817309 .. 4818234
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0065100.1

Sequence Viewer

Length: 837 bp
ATGATATTGACTAAGATGAAGGAAACAGCTGAGGCTTATTTGGGGAAGAAGATCAAAGACGCTCTCATAACTGGTCCAGCTTATTTCAATGATGCACAAAGGCAGGCTACTAAGGATGCAGGCAAAATTGCCTGGCTCAATGTGGTTCAAGTAATTAATGAGCCCAAGGCCGCGGCCATTGCCTATGGTCTTGACAAGAATAAGGAAGAGAAGAACATATATATTGGCGGTGGTACATTTGATGTTAGCATCTTGACCATTGATGATGGTGTGATCGAGGTGATCTCTACGAGTGGAGACACTCATTTGGGAGGAGAGGATTTCAACCACAGAGTAATGGAGTATCTTATTAAGTTGATCAAGAAGCAGTACAACAAAGACATTAGCAAGGACAACAAGTCTATCTGGAAGCTTCACAAGGAATGCGAGAAGGCCAAGAGAGCCTTGTATTTCCCGCACCAGTTCTCTGTGGGGATTGAGTCTCCTTTCGATGGTATGGATTTCTCGGAATCCTTGACAAGGGAGAGGTTTGAGGAATTGAACACGGACTTGTTCAACAAGACCATGGGGATAGTGGAAAAGACTCTGCAAGATACAGGATTGAAGAAAAAAGATATTCATGAGATTGTGCTTGTTGGAGGGAGCACTAAAATTCCGAAGGTGAAGCAGTTGTTGATCGACTTGTTTAATGGGAAGGAACCAATGAAGGGACTTAATCCTGATGAGGTTGCGGCCTATGGTGCTTCAATTCATGGTGGAGTCCTCAGCGGAGAAGCTGATTATGATACTCATGTATACTGCGATTGTCATAAATACTTAAAAAGTGTAGTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

278

Amino Acids

31.02

Weight (kDa)

6.26

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 268 6.6e-106 Hsp70 protein
MreB_Mbl PF06723 17 - 229 7.6e-14 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38152
fragaria_vesca FvH4_6g11720
malus_domestica MD04G1149800.v1.1 MD12G1164200.v1.1
prunus_persica Prupe.6G274700_v2.0.a1
pyrus_communis pycom04g13530
rosa_chinensis RchiOBHm_Chr3g0463491
rosa_laevigata RLG00000019555 RLG00000024783
rosa_multiflora Rmu_sc0000923.1_g000020
rosa_roxburghii Rroxscaffold_6G00416520
rosa_rugosa Rorug03G0065100
rosa_samantha Rh3AG122300 Rh3BG127000 Rh3CG128900 Rh3DG127800
rosa_wichuraiana Rw0G010600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 795
AccII CGCG 1 cut(s) 173
AciI CCGC 6 cut(s) 171, 173, 228, 455, 731, 768
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 651
AfaI GTAC 2 cut(s) 235, 371
AfiI CCNNNNNNNGG 3 cut(s) 491, 519, 707
AgsI TTSAA 7 cut(s) 88, 149, 325, 541, 556, 604, 747
AhdI GACNNNNNGTC 1 cut(s) 397
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 4 cut(s) 29, 80, 412, 776
AluI AGCT 4 cut(s) 29, 80, 412, 776
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 2 cut(s) 291, 486
AoxI GGCC 4 cut(s) 168, 174, 432, 732
ApoI RAATTY 1 cut(s) 651
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 292, 673
AvaII GGWCC 1 cut(s) 74
BaeI ACNNNNGTAYC 2 cut(s) 777, 810
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 647
BbvCI CCTCAGC 2 cut(s) 30, 764
BccI CCATC 2 cut(s) 260, 485
BciT130I CCWGG 1 cut(s) 133
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 291, 486
BisI GCNGC 3 cut(s) 171, 174, 732
BlsI GCNGC 3 cut(s) 172, 175, 733
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 74
BmeRI GACNNNNNGTC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 3 cut(s) 82, 106, 258
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu10I CCTNAGC 2 cut(s) 30, 764
BsaJI CCNNGG 3 cut(s) 165, 171, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 491, 519, 707
Bse1I ACTGG 2 cut(s) 76, 460
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 3 cut(s) 165, 171, 564
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 491, 519, 707
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 21, 778
BseNI ACTGG 2 cut(s) 76, 460
BseRI GAGGAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 4 cut(s) 170, 176, 434, 734
BsiHKAI GWGCWC 1 cut(s) 647
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 3 cut(s) 491, 519, 707
BsmAI GTCTC 2 cut(s) 291, 486
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 4 cut(s) 170, 176, 434, 734
Bsp1286I GDGCHC 2 cut(s) 165, 647
Bsp143I GATC 5 cut(s) 51, 273, 282, 357, 675
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 6 cut(s) 171, 173, 228, 455, 731, 768
BspANI GGCC 4 cut(s) 170, 176, 434, 734
BspCNI CTCAG 2 cut(s) 22, 777
BspFNI CGCG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 699
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 2 cut(s) 76, 460
BssECI CCNNGG 3 cut(s) 165, 171, 564
BssMI GATC 5 cut(s) 51, 273, 282, 357, 675
BssNAI GTATAC 1 cut(s) 796
BssT1I CCWWGG 2 cut(s) 165, 564
Bst1107I GTATAC 1 cut(s) 796
Bst2UI CCWGG 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 105, 121
BstDEI CTNAG 4 cut(s) 12, 30, 111, 764
BstDSI CCRYGG 2 cut(s) 171, 564
BstENI CCTNNNNNAGG 1 cut(s) 517
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 5 cut(s) 54, 276, 285, 360, 678
BstMAI GTCTC 2 cut(s) 291, 486
BstMBI GATC 5 cut(s) 51, 273, 282, 357, 675
BstMWI GCNNNNNNNGC 3 cut(s) 179, 440, 740
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstUI CGCG 1 cut(s) 173
BstZ17I GTATAC 1 cut(s) 796
BsuRI GGCC 4 cut(s) 170, 176, 434, 734
BtgI CCRYGG 2 cut(s) 171, 564
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 105, 121
CciI TCATGA 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 74
Cfr42I CCGCGG 1 cut(s) 174
CseI GACGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 234, 370
CviAII CATG 4 cut(s) 565, 620, 752, 791
CviQI GTAC 2 cut(s) 234, 370
DdeI CTNAG 4 cut(s) 12, 30, 111, 764
DpnI GATC 5 cut(s) 53, 275, 284, 359, 677
DpnII GATC 5 cut(s) 51, 273, 282, 357, 675
DriI GACNNNNNGTC 1 cut(s) 397
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 201
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 165, 564
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 131
EcoT14I CCWWGG 2 cut(s) 165, 564
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 2 cut(s) 165, 564
FaeI CATG 4 cut(s) 568, 623, 755, 794
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 1 cut(s) 723
FatI CATG 4 cut(s) 564, 619, 751, 790
FauI CCCGC 1 cut(s) 462
FbaI TGATCA 1 cut(s) 357
FblI GTMKAC 1 cut(s) 795
Fnu4HI GCNGC 3 cut(s) 171, 174, 732
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 171, 174, 732
GluI GCNGC 3 cut(s) 171, 174, 732
HaeIII GGCC 4 cut(s) 170, 176, 434, 734
HgaI GACGC 1 cut(s) 68
Hin1II CATG 4 cut(s) 568, 623, 755, 794
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 4 cut(s) 479, 509, 583, 759
HphI GGTGA 2 cut(s) 292, 673
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 2 cut(s) 508, 657
Hpy188III TCNNGA 6 cut(s) 191, 253, 361, 406, 620, 719
Hpy8I GTNNAC 1 cut(s) 796
HpyAV CCTTC 5 cut(s) 13, 424, 652, 688, 700
HpyCH4V TGCA 3 cut(s) 95, 119, 589
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 440, 740
HpyF3I CTNAG 4 cut(s) 12, 30, 111, 764
Hsp92II CATG 4 cut(s) 568, 623, 755, 794
Ksp22I TGATCA 1 cut(s) 357
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 5 cut(s) 51, 273, 282, 357, 675
LmnI GCTCC 1 cut(s) 642
LweI GCATC 3 cut(s) 82, 106, 258
MalI GATC 5 cut(s) 53, 275, 284, 359, 677
MboI GATC 5 cut(s) 51, 273, 282, 357, 675
MboII GAAGA 5 cut(s) 58, 61, 218, 223, 616
MhlI GDGCHC 2 cut(s) 165, 647
MluCI AATT 5 cut(s) 126, 153, 536, 651, 747
MlyI GAGTC 3 cut(s) 488, 577, 768
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 9 cut(s) 25, 271, 305, 310, 519, 526, 632, 718, 773
MseI TTAA 5 cut(s) 156, 351, 687, 714, 818
MspA1I CMGCKG 3 cut(s) 29, 173, 768
MspR9I CCNGG 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 179, 440, 740
NcoI CCATGG 1 cut(s) 564
NdeII GATC 5 cut(s) 51, 273, 282, 357, 675
NlaIII CATG 4 cut(s) 568, 623, 755, 794
NlaIV GGNNCC 1 cut(s) 699
PagI TCATGA 1 cut(s) 619
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 509
PkrI GCNGC 3 cut(s) 172, 175, 733
PleI GAGTC 3 cut(s) 487, 577, 767
PpsI GAGTC 3 cut(s) 487, 577, 767
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 699
PspPI GGNCC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 235, 371
RsaNI GTAC 2 cut(s) 234, 370
SacII CCGCGG 1 cut(s) 174
SaqAI TTAA 5 cut(s) 156, 351, 687, 714, 818
SatI GCNGC 3 cut(s) 171, 174, 732
Sau3AI GATC 5 cut(s) 51, 273, 282, 357, 675
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 3 cut(s) 488, 577, 768
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 2 cut(s) 165, 647
SetI ASST 8 cut(s) 31, 82, 282, 414, 530, 663, 729, 778
SfaNI GCATC 3 cut(s) 82, 106, 258
Sfr303I CCGCGG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 174
SinI GGWCC 1 cut(s) 74
Sse9I AATT 5 cut(s) 126, 153, 536, 651, 747
SsiI CCGC 6 cut(s) 171, 173, 228, 455, 731, 768
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 2 cut(s) 165, 564
TaqI TCGA 3 cut(s) 276, 489, 678
TasI AATT 5 cut(s) 126, 153, 536, 651, 747
TatI WGTACW 1 cut(s) 369
TauI GCSGC 3 cut(s) 173, 176, 734
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 5 cut(s) 156, 351, 687, 714, 818
Tru9I TTAA 5 cut(s) 156, 351, 687, 714, 818
TspDTI ATGAA 4 cut(s) 32, 608, 719, 740
TspGWI ACGGA 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 74
VspI ATTAAT 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 517
XapI RAATTY 1 cut(s) 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.