FvH4_6g11720

Lactosylceramide 4-alpha-galactosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013878
Physical Location & Seq
Forward (+)
7012444 .. 7014138
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11720.t1

Sequence Viewer

Length: 1311 bp
ATGGGGTTTGGTCACAAATGGCCAGCTCTGATAAGGATGAGTAGCCGAATCGACAGCCGCCTACTTAGTCTGGCGAAGTTCCACCTCTTCTGCACTTTATCGCTTGTTGCAATCATCTTCATCATCTTTGCAGATGGTATCATATATACTGATTCACAAAACTCGGTTGAGTTGCAAGTTAAAGCTGCTTCTCAGGTCCTGCAGACTCATAGTGTCGAACGACAGTTCATCAAGTCTGATGTAACTAGCAAATCGGTGCGTTCTATGCAAGAAGAGGTCGTTGATGTTGTTGAAGTTGATACAGAAGATACAAGTCCTGTTGTTGCTCCTTTCAATGTCACCGAAGAAGAAAGAATCAGCTGGTTTAAAGGAAAGCTCCCCAAATTTGTGATTTTTGATTCAGACGAGAGAGCACAGCGGTTCCATGGTAGAGTTCTTGAATTCTTTGACCATGAGTGTGAGACTCAGTTCTTCATGACATGGATTTCACCTGTGAGGTCTTTCGGAAGCAGAGAATTCCTGTCGATGGAGAGTGTATTCAGAGCTCACCCTCGCGGTTGCTTGATGATTCTCTCGAGAACCATGGACTCCAGGCGAGGTTACAGGCTTCTGAAACCTCTGCAGGATCGCGGCTTCAAAGTTCATGCAGTGACACCAGACTTGTCATTTCTGTTCAAGAACACCCCAGCCGAGGCCTGGTTTGCTGAGATGAAGAAAGGCATCAAAGACCCTGGTGAGATTCCATTAGCTCAGAACCTGTCTAATTTAATGAGACTAGCAGTTCTATACAAGTATGGAGGTGTGTACCTGGACACAGATTTCATCGTCATGAAATCGTTTTCCGGGTTGAGGAACTCAATCGGTGCACAAAGTATGGATGCTGAGATGAAACACTGGACCAGACTAAATAATGCAGTGCTGGTGTTTGATATGAATCATCCTCTTCTGCACAAATTCATTGAGGAGTTTTCCTTGACTTTTGATGGGAATAAATGGGGTCATAATGGACCCTATCTTGTTTCCAGAGTGGTCCAGAGAGTGGAAAACAGACCTGGATATAACTTTACAGTCCTGCCTCCAATGGCTTTCTATCCTGTGGATTGGACTAGAATAGGGGGATTGTTTAAGAAGCCGAAAAACCATGCTGATACTAAATGGATAAAAGCAAAGCTGCTTCAGCTTAGCGGGGAGACTTACGGAGTACACCTGTGGAACAAGCAAAGTAGCAGAGTACAAATCGAAGAAGGAAGCATTATGCAGAGATTAATCTCCGATCACTGCATCATCTGTAAAGACATATACAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

437

Amino Acids

50.17

Weight (kDa)

8.91

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 171 - 291 1.7e-22 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 309 - 431 1.1e-29 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38152
fragaria_vesca FvH4_6g11720
malus_domestica MD04G1149800.v1.1 MD12G1164200.v1.1
prunus_persica Prupe.6G274700_v2.0.a1
pyrus_communis pycom04g13530
rosa_chinensis RchiOBHm_Chr3g0463491
rosa_laevigata RLG00000019555 RLG00000024783
rosa_multiflora Rmu_sc0000923.1_g000020
rosa_roxburghii Rroxscaffold_6G00416520
rosa_rugosa Rorug03G0065100
rosa_samantha Rh3AG122300 Rh3BG127000 Rh3CG128900 Rh3DG127800
rosa_wichuraiana Rw0G010600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1039
AccII CGCG 2 cut(s) 555, 630
AciI CCGC 5 cut(s) 58, 418, 555, 630, 1185
AclWI GGATC 1 cut(s) 633
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 4 cut(s) 383, 440, 515, 953
AcuI CTGAAG 1 cut(s) 1160
AfaI GTAC 3 cut(s) 806, 1203, 1233
AfiI CCNNNNNNNGG 5 cut(s) 526, 691, 696, 849, 1039
AgsI TTSAA 5 cut(s) 293, 334, 440, 637, 676
AjnI CCWGG 5 cut(s) 590, 695, 730, 807, 1051
AluBI AGCT 8 cut(s) 26, 185, 360, 376, 545, 749, 1171, 1180
AluI AGCT 8 cut(s) 26, 185, 360, 376, 545, 749, 1171, 1180
Alw21I GWGCWC 3 cut(s) 415, 547, 868
Alw26I GTCTC 3 cut(s) 455, 766, 1184
Alw44I GTGCAC 1 cut(s) 864
AlwI GGATC 1 cut(s) 633
AlwNI CAGNNNCTG 2 cut(s) 199, 757
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 2 cut(s) 20, 693
ApaLI GTGCAC 1 cut(s) 864
ApeKI GCWGC 2 cut(s) 185, 1171
ApoI RAATTY 4 cut(s) 383, 440, 515, 953
AseI ATTAAT 1 cut(s) 1265
AspS9I GGNCC 4 cut(s) 196, 897, 1007, 1030
AsuC2I CCSGG 1 cut(s) 844
AsuHPI GGTGA 4 cut(s) 331, 480, 539, 746
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 4 cut(s) 196, 897, 1007, 1030
BaeGI GKGCMC 1 cut(s) 868
BalI TGGCCA 1 cut(s) 22
BanII GRGCYC 1 cut(s) 547
Bbv12I GWGCWC 3 cut(s) 415, 547, 868
BbvI GCAGC 2 cut(s) 172, 1158
BccI CCATC 3 cut(s) 128, 520, 977
BciT130I CCWGG 5 cut(s) 592, 697, 732, 809, 1053
BcnI CCSGG 1 cut(s) 844
BcoDI GTCTC 3 cut(s) 455, 766, 1184
BfaI CTAG 3 cut(s) 246, 776, 1107
BfmI CTRYAG 2 cut(s) 200, 620
BisI GCNGC 4 cut(s) 58, 186, 631, 1172
BlpI GCTNAGC 1 cut(s) 1181
BlsI GCNGC 4 cut(s) 59, 187, 632, 1173
Bme1390I CCNGG 6 cut(s) 592, 697, 732, 809, 844, 1053
Bme18I GGWCC 4 cut(s) 196, 897, 1007, 1030
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 4 cut(s) 196, 897, 1007, 1030
BmiI GGNNCC 2 cut(s) 422, 1009
BmrFI CCNGG 6 cut(s) 592, 697, 732, 809, 844, 1053
BmsI GCATC 3 cut(s) 729, 868, 1290
BpmI CTGGAG 1 cut(s) 574
Bpu1102I GCTNAGC 1 cut(s) 1181
BpuMI CCSGG 1 cut(s) 844
BsaBI GATNNNNATC 1 cut(s) 933
BsaJI CCNNGG 4 cut(s) 424, 582, 690, 730
Bsc4I CCNNNNNNNGG 5 cut(s) 526, 691, 696, 849, 1039
Bse1I ACTGG 1 cut(s) 899
Bse8I GATNNNNATC 1 cut(s) 933
BseBI CCWGG 5 cut(s) 592, 697, 732, 809, 1053
BseDI CCNNGG 4 cut(s) 424, 582, 690, 730
BseGI GGATG 3 cut(s) 42, 883, 937
BseJI GATNNNNATC 1 cut(s) 933
BseLI CCNNNNNNNGG 5 cut(s) 526, 691, 696, 849, 1039
BseMII CTCAG 5 cut(s) 206, 479, 696, 764, 873
BseNI ACTGG 1 cut(s) 899
BseRI GAGGAG 1 cut(s) 977
BseSI GKGCMC 1 cut(s) 868
BseXI GCAGC 2 cut(s) 172, 1158
BseYI CCCAGC 1 cut(s) 685
BsgI GTGCAG 2 cut(s) 76, 932
Bsh1236I CGCG 2 cut(s) 555, 630
BshFI GGCC 2 cut(s) 22, 695
BsiHKAI GWGCWC 3 cut(s) 415, 547, 868
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 1 cut(s) 843
BslI CCNNNNNNNGG 5 cut(s) 526, 691, 696, 849, 1039
BsmAI GTCTC 3 cut(s) 455, 766, 1184
BsnI GGCC 2 cut(s) 22, 695
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 3 cut(s) 415, 547, 868
Bsp143I GATC 2 cut(s) 625, 1273
Bsp1720I GCTNAGC 1 cut(s) 1181
Bsp19I CCATGG 2 cut(s) 424, 582
BspACI CCGC 5 cut(s) 58, 418, 555, 630, 1185
BspANI GGCC 2 cut(s) 22, 695
BspCNI CTCAG 5 cut(s) 205, 478, 697, 763, 874
BspFNI CGCG 2 cut(s) 555, 630
BspHI TCATGA 2 cut(s) 474, 828
BspLI GGNNCC 2 cut(s) 422, 1009
BspMAI CTGCAG 2 cut(s) 204, 624
BspPI GGATC 1 cut(s) 633
BsrI ACTGG 1 cut(s) 899
BssECI CCNNGG 4 cut(s) 424, 582, 690, 730
BssMI GATC 2 cut(s) 625, 1273
BssT1I CCWWGG 2 cut(s) 424, 582
Bst2UI CCWGG 5 cut(s) 592, 697, 732, 809, 1053
Bst4CI ACNGT 3 cut(s) 225, 1069, 1304
Bst6I CTCTTC 3 cut(s) 92, 267, 948
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 7 cut(s) 65, 192, 465, 705, 750, 882, 1181
BstDSI CCRYGG 2 cut(s) 424, 582
BstF5I GGATG 3 cut(s) 42, 883, 937
BstFNI CGCG 2 cut(s) 555, 630
BstKTI GATC 2 cut(s) 628, 1276
BstMAI GTCTC 3 cut(s) 455, 766, 1184
BstMBI GATC 2 cut(s) 625, 1273
BstMWI GCNNNNNNNGC 3 cut(s) 265, 701, 1177
BstNI CCWGG 5 cut(s) 592, 697, 732, 809, 1053
BstSCI CCNGG 6 cut(s) 590, 695, 730, 807, 842, 1051
BstSFI CTRYAG 2 cut(s) 200, 620
BstSLI GKGCMC 1 cut(s) 868
BstUI CGCG 2 cut(s) 555, 630
BstV1I GCAGC 2 cut(s) 172, 1158
BsuRI GGCC 2 cut(s) 22, 695
BtgI CCRYGG 2 cut(s) 424, 582
BtsCI GGATG 3 cut(s) 42, 883, 937
BtsI GCAGTG 3 cut(s) 654, 921, 1276
BtsIMutI CAGTG 4 cut(s) 654, 892, 921, 1276
Cac8I GCNNGC 1 cut(s) 24
CaiI CAGNNNCTG 2 cut(s) 199, 757
CciI TCATGA 2 cut(s) 474, 828
Cfr13I GGNCC 4 cut(s) 196, 897, 1007, 1030
Csp6I GTAC 3 cut(s) 805, 1202, 1232
CviAII CATG 8 cut(s) 425, 452, 475, 480, 583, 644, 829, 1142
CviQI GTAC 3 cut(s) 805, 1202, 1232
DdeI CTNAG 7 cut(s) 65, 192, 465, 705, 750, 882, 1181
DpnI GATC 2 cut(s) 627, 1275
DpnII GATC 2 cut(s) 625, 1273
DraI TTTAAA 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 20
Eam1104I CTCTTC 3 cut(s) 92, 267, 948
EarI CTCTTC 3 cut(s) 92, 267, 948
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 2 cut(s) 424, 582
Eco147I AGGCCT 1 cut(s) 695
Eco24I GRGCYC 1 cut(s) 547
Eco47I GGWCC 4 cut(s) 196, 897, 1007, 1030
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 1160
Eco88I CYCGRG 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 545
EcoO109I RGGNCCY 1 cut(s) 196
EcoRI GAATTC 2 cut(s) 440, 515
EcoRII CCWGG 5 cut(s) 590, 695, 730, 807, 1051
EcoT14I CCWWGG 2 cut(s) 424, 582
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 2 cut(s) 424, 582
FaeI CATG 8 cut(s) 428, 455, 478, 483, 586, 647, 832, 1145
FatI CATG 8 cut(s) 424, 451, 474, 479, 582, 643, 828, 1141
FauI CCCGC 1 cut(s) 1178
Fnu4HI GCNGC 4 cut(s) 58, 186, 631, 1172
FokI GGATG 3 cut(s) 49, 890, 924
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 4 cut(s) 58, 186, 631, 1172
FspBI CTAG 3 cut(s) 246, 776, 1107
GluI GCNGC 4 cut(s) 58, 186, 631, 1172
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 574
HaeIII GGCC 2 cut(s) 22, 695
HapII CCGG 1 cut(s) 843
Hin1II CATG 8 cut(s) 428, 455, 478, 483, 586, 647, 832, 1145
HpaII CCGG 1 cut(s) 843
HphI GGTGA 4 cut(s) 331, 480, 539, 746
Hpy166II GTNNAC 3 cut(s) 805, 866, 1204
Hpy188I TCNGA 8 cut(s) 30, 238, 403, 506, 542, 612, 753, 1273
Hpy188III TCNNGA 8 cut(s) 437, 475, 574, 576, 676, 829, 1023, 1033
Hpy8I GTNNAC 3 cut(s) 805, 866, 1204
HpyAV CCTTC 1 cut(s) 1238
HpyCH4III ACNGT 3 cut(s) 225, 1069, 1304
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 701, 1177
HpyF3I CTNAG 7 cut(s) 65, 192, 465, 705, 750, 882, 1181
Hsp92II CATG 8 cut(s) 428, 455, 478, 483, 586, 647, 832, 1145
Kzo9I GATC 2 cut(s) 625, 1273
LmnI GCTCC 2 cut(s) 331, 381
Lsp1109I GCAGC 2 cut(s) 172, 1158
LweI GCATC 3 cut(s) 729, 868, 1290
MaeI CTAG 3 cut(s) 246, 776, 1107
MaeIII GTNAC 5 cut(s) 11, 241, 337, 599, 649
MalI GATC 2 cut(s) 627, 1275
MboI GATC 2 cut(s) 625, 1273
MhlI GDGCHC 3 cut(s) 415, 547, 868
MlsI TGGCCA 1 cut(s) 22
MluCI AATT 5 cut(s) 383, 440, 515, 763, 953
MluNI TGGCCA 1 cut(s) 22
MlyI GAGTC 3 cut(s) 199, 457, 581
Mox20I TGGCCA 1 cut(s) 22
MscI TGGCCA 1 cut(s) 22
MseI TTAA 6 cut(s) 180, 366, 767, 1125, 1265, 1309
MslI CAYNNNNRTG 2 cut(s) 456, 827
Msp20I TGGCCA 1 cut(s) 22
MspA1I CMGCKG 2 cut(s) 360, 418
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 6 cut(s) 592, 697, 732, 809, 844, 1053
MvaI CCWGG 5 cut(s) 592, 697, 732, 809, 1053
MvnI CGCG 2 cut(s) 555, 630
MwoI GCNNNNNNNGC 3 cut(s) 265, 701, 1177
NciI CCSGG 1 cut(s) 844
NcoI CCATGG 2 cut(s) 424, 582
NdeII GATC 2 cut(s) 625, 1273
NlaIII CATG 8 cut(s) 428, 455, 478, 483, 586, 647, 832, 1145
NlaIV GGNNCC 2 cut(s) 422, 1009
NmeAIII GCCGAG 1 cut(s) 715
NmuCI GTSAC 3 cut(s) 11, 337, 649
PaeR7I CTCGAG 1 cut(s) 574
PagI TCATGA 2 cut(s) 474, 828
PceI AGGCCT 1 cut(s) 695
PfeI GAWTC 7 cut(s) 48, 152, 354, 398, 568, 739, 934
PflMI CCANNNNNTGG 1 cut(s) 1039
PkrI GCNGC 4 cut(s) 59, 187, 632, 1173
PleI GAGTC 3 cut(s) 199, 457, 581
PpsI GAGTC 3 cut(s) 199, 457, 581
PpuMI RGGWCCY 1 cut(s) 196
PshBI ATTAAT 1 cut(s) 1265
Psp124BI GAGCTC 1 cut(s) 547
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 5 cut(s) 590, 695, 730, 807, 1051
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 5 cut(s) 590, 695, 730, 807, 1051
PspN4I GGNNCC 2 cut(s) 422, 1009
PspPI GGNCC 4 cut(s) 196, 897, 1007, 1030
PspPPI RGGWCCY 1 cut(s) 196
PstI CTGCAG 2 cut(s) 204, 624
PstNI CAGNNNCTG 2 cut(s) 199, 757
PvuII CAGCTG 1 cut(s) 360
RsaI GTAC 3 cut(s) 806, 1203, 1233
RsaNI GTAC 3 cut(s) 805, 1202, 1232
RseI CAYNNNNRTG 2 cut(s) 456, 827
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 6 cut(s) 180, 366, 767, 1125, 1265, 1309
SatI GCNGC 4 cut(s) 58, 186, 631, 1172
Sau3AI GATC 2 cut(s) 625, 1273
Sau96I GGNCC 4 cut(s) 196, 897, 1007, 1030
SchI GAGTC 3 cut(s) 199, 457, 581
ScrFI CCNGG 6 cut(s) 592, 697, 732, 809, 844, 1053
SduI GDGCHC 3 cut(s) 415, 547, 868
SfaNI GCATC 3 cut(s) 729, 868, 1290
SfcI CTRYAG 2 cut(s) 200, 620
Sfr274I CTCGAG 1 cut(s) 574
SinI GGWCC 4 cut(s) 196, 897, 1007, 1030
SlaI CTCGAG 1 cut(s) 574
SmiMI CAYNNNNRTG 2 cut(s) 456, 827
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
Sse9I AATT 5 cut(s) 383, 440, 515, 763, 953
SseBI AGGCCT 1 cut(s) 695
SsiI CCGC 5 cut(s) 58, 418, 555, 630, 1185
SspMI CTAG 3 cut(s) 246, 776, 1107
SstI GAGCTC 1 cut(s) 547
StuI AGGCCT 1 cut(s) 695
StyD4I CCNGG 6 cut(s) 590, 695, 730, 807, 842, 1051
StyI CCWWGG 2 cut(s) 424, 582
TaaI ACNGT 3 cut(s) 225, 1069, 1304
TaqI TCGA 5 cut(s) 51, 216, 524, 575, 1239
TasI AATT 5 cut(s) 383, 440, 515, 763, 953
TatI WGTACW 2 cut(s) 1201, 1231
TauI GCSGC 2 cut(s) 60, 633
TfiI GAWTC 7 cut(s) 48, 152, 354, 398, 568, 739, 934
Tru1I TTAA 6 cut(s) 180, 366, 767, 1125, 1265, 1309
Tru9I TTAA 6 cut(s) 180, 366, 767, 1125, 1265, 1309
TscAI CASTG 4 cut(s) 654, 899, 921, 1283
TseFI GTSAC 3 cut(s) 11, 337, 649
TseI GCWGC 2 cut(s) 185, 1171
Tsp45I GTSAC 3 cut(s) 11, 337, 649
TspGWI ACGGA 1 cut(s) 1212
TspRI CASTG 4 cut(s) 654, 899, 921, 1283
Van91I CCANNNNNTGG 1 cut(s) 1039
VneI GTGCAC 1 cut(s) 864
VpaK11BI GGWCC 4 cut(s) 196, 897, 1007, 1030
VspI ATTAAT 1 cut(s) 1265
XapI RAATTY 4 cut(s) 383, 440, 515, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 693
XhoI CTCGAG 1 cut(s) 574
XspI CTAG 3 cut(s) 246, 776, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.