Prupe.6G274700_v2.0.a1

Lactosylceramide 4-alpha-galactosyltransferase-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
25918556 .. 25920954
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G274700.1

Sequence Viewer

Length: 1260 bp
ATGTTCCAATCCCGCCTACTTAGCCTTGCCAAATTTCATATCTTCTGTACTCTATCACTAGCTGCAATCATCTTCATCATCTATGCCGATAGCATCATCTATAATGACTCCGAAAAATCGGTTGAGTTGAATGATAAAGCTCCTTCTCCAGTGCTGCTGCAGACTCATAGTTCTGCAGGCCATTTGATCAAGTCTGATATAAATCGCATAGCCCTGCATTCCATGCAGGAAGAGACCCTTGAGGTTGGTAGAGAAATTTCAAGTCCTCTTGTTCCTCCTTTCAATGCCACAGAAGAGGAAAGAATCGCTTGGTTTCGGAGCAAGCTACCCAAATTTGAGATTTTCAAATCAGACAAGTTTGCAAGGCAATTCCACGGTCGTGTTCTGGAATTCTTTAACAACAAGTGTGAGGGGCAGTTCTTTATGACATGGATTTCACCGGTGAGGTCCTTTGGAAGCAGAGAGTTTTTGTCCATGGAGAGTCTTTTCAGAGCCCACCCTCATGGATGCTTGATGATTCTCTCGAGAACTATGGACTCCCGACGTGGTTACAGAATTCTGAAACCGCTGCAGGATCGCGGGTTCAAGGTTCATGCAGTGACACCAGACTTATCATTTCTGTTCAAGAACACCCCAGCTGAAGCCTGGTTTGCTGAAATGAAGGGAGGCAAAAAAGACCCTGGTGAGATCCCATTAGCCCAGAATCTGTCTAATTTGATGAGGCTTGCAATTCTATACAAGTATGGAGGTGTTTACTTAGACATGGATTTCATAGTTTTGAATTCATTCTTGGGGTTGAGAAACTCAATCGGTGCACAAAGTGTGGATGTGGCATCTAAAAACTGGACCAGGTTAAATAATGCAGTTCTGGTGTTTGATATGAATCATCCCCTTCTGTACAAATTCATGGAGGAATTTGCCTCCACTTTTGATGGGAATAAATGGGGGCACAATGGTCCCTATCTGGTGTCCAGAGTGGTCCGGAGGGTGCAAAACCGACCAGGTTACAACTTTACAATTCTACCCCCTATCGCCTTTTACCCCGTCGATTGGAATAGGATTGGGGGACTGTTTAAGAAGCCAGGAAGCCAAGCTCATTCTCGATGGGTAAAAGCAAAGCTGCTTCAGCTCAGCGGAGAGACTTATGGGGTACACTTGTGGAACAAGCAAAGTAGCCGAGTCACGATCGAAGAAGGAAGCATTATGCAGAGATTAATCTCCGATCATTGTGTCATTTGCAGTGACATATACAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

420

Amino Acids

47.94

Weight (kDa)

9.34

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38152
fragaria_vesca FvH4_6g11720
malus_domestica MD04G1149800.v1.1 MD12G1164200.v1.1
prunus_persica Prupe.6G274700_v2.0.a1
pyrus_communis pycom04g13530
rosa_chinensis RchiOBHm_Chr3g0463491
rosa_laevigata RLG00000019555 RLG00000024783
rosa_multiflora Rmu_sc0000923.1_g000020
rosa_roxburghii Rroxscaffold_6G00416520
rosa_rugosa Rorug03G0065100
rosa_samantha Rh3AG122300 Rh3BG127000 Rh3CG128900 Rh3DG127800
rosa_wichuraiana Rw0G010600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 579
AccIII TCCGGA 1 cut(s) 981
AciI CCGC 4 cut(s) 13, 566, 579, 1134
AclWI GGATC 2 cut(s) 582, 682
AcsI RAATTY 8 cut(s) 32, 255, 332, 389, 555, 781, 902, 914
AcuI CTGAAG 2 cut(s) 660, 1109
AdeI CACNNNGTG 1 cut(s) 821
AfaI GTAC 3 cut(s) 49, 899, 1152
AfiI CCNNNNNNNGG 1 cut(s) 1050
AgeI ACCGGT 1 cut(s) 439
AgsI TTSAA 7 cut(s) 130, 261, 283, 346, 586, 625, 781
AjiI CACGTC 1 cut(s) 545
AjnI CCWGG 5 cut(s) 644, 679, 848, 1000, 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
AleI CACNNNNGTG 1 cut(s) 378
AloI GAACNNNNNNTCC 2 cut(s) 566, 598
AluBI AGCT 7 cut(s) 62, 140, 325, 638, 1094, 1120, 1129
AluI AGCT 7 cut(s) 62, 140, 325, 638, 1094, 1120, 1129
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 2 cut(s) 227, 1133
Alw44I GTGCAC 1 cut(s) 813
AlwI GGATC 2 cut(s) 582, 682
AlwNI CAGNNNCTG 1 cut(s) 706
Ama87I CYCGRG 1 cut(s) 523
Aor13HI TCCGGA 1 cut(s) 981
AoxI GGCC 1 cut(s) 178
ApaLI GTGCAC 1 cut(s) 813
ApeKI GCWGC 5 cut(s) 62, 154, 157, 568, 1120
ApoI RAATTY 8 cut(s) 32, 255, 332, 389, 555, 781, 902, 914
AseI ATTAAT 1 cut(s) 1214
AsiGI ACCGGT 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 785
AspS9I GGNCC 4 cut(s) 447, 846, 956, 979
AsuHPI GGTGA 3 cut(s) 429, 454, 695
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 4 cut(s) 447, 846, 956, 979
BaeGI GKGCMC 2 cut(s) 817, 951
BaeI ACNNNNGTAYC 2 cut(s) 1142, 1175
BanII GRGCYC 1 cut(s) 496
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 5 cut(s) 49, 141, 144, 555, 1107
BccI CCATC 2 cut(s) 926, 1098
BciT130I CCWGG 5 cut(s) 646, 681, 850, 1002, 1083
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 227, 1133
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 3 cut(s) 158, 174, 569
BisI GCNGC 5 cut(s) 63, 155, 158, 569, 1121
BlpI GCTNAGC 1 cut(s) 1130
BlsI GCNGC 5 cut(s) 64, 156, 159, 570, 1122
Bme1390I CCNGG 5 cut(s) 646, 681, 850, 1002, 1083
Bme18I GGWCC 4 cut(s) 447, 846, 956, 979
BmeT110I CYCGRG 1 cut(s) 523
BmgBI CACGTC 1 cut(s) 545
BmgT120I GGNCC 4 cut(s) 447, 846, 956, 979
BmiI GGNNCC 1 cut(s) 958
BmrFI CCNGG 5 cut(s) 646, 681, 850, 1002, 1083
BmsI GCATC 3 cut(s) 102, 497, 842
BpmI CTGGAG 1 cut(s) 132
Bpu1102I GCTNAGC 1 cut(s) 1130
BpuEI CTTGAG 1 cut(s) 260
BsaBI GATNNNNATC 2 cut(s) 201, 882
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 373, 474, 679
BsaWI WCCGGW 2 cut(s) 439, 981
Bsc4I CCNNNNNNNGG 1 cut(s) 1050
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 2 cut(s) 149, 848
Bse8I GATNNNNATC 2 cut(s) 201, 882
BseAI TCCGGA 1 cut(s) 981
BseBI CCWGG 5 cut(s) 646, 681, 850, 1002, 1083
BseDI CCNNGG 3 cut(s) 373, 474, 679
BseGI GGATG 3 cut(s) 512, 832, 886
BseJI GATNNNNATC 2 cut(s) 201, 882
BseLI CCNNNNNNNGG 1 cut(s) 1050
BseMII CTCAG 1 cut(s) 1144
BseNI ACTGG 2 cut(s) 149, 848
BseSI GKGCMC 2 cut(s) 817, 951
BseXI GCAGC 5 cut(s) 49, 141, 144, 555, 1107
BseYI CCCAGC 1 cut(s) 634
Bsh1236I CGCG 1 cut(s) 579
Bsh1285I CGRYCG 2 cut(s) 379, 1188
BshFI GGCC 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 439
BsiEI CGRYCG 2 cut(s) 379, 1188
BsiHKAI GWGCWC 1 cut(s) 817
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 2 cut(s) 440, 982
BslFI GGGAC 2 cut(s) 942, 1080
BslI CCNNNNNNNGG 1 cut(s) 1050
BsmAI GTCTC 2 cut(s) 227, 1133
BsmFI GGGAC 2 cut(s) 942, 1080
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 496, 817, 951
Bsp13I TCCGGA 1 cut(s) 981
Bsp1407I TGTACA 1 cut(s) 897
Bsp143I GATC 5 cut(s) 186, 574, 687, 1185, 1222
Bsp1720I GCTNAGC 1 cut(s) 1130
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 4 cut(s) 13, 566, 579, 1134
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 1143
BspEI TCCGGA 1 cut(s) 981
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 958
BspMAI CTGCAG 3 cut(s) 162, 178, 573
BspPI GGATC 2 cut(s) 582, 682
BspTNI GGTCTC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 439
BsrGI TGTACA 1 cut(s) 897
BsrI ACTGG 2 cut(s) 149, 848
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 373, 474, 679
BssMI GATC 5 cut(s) 186, 574, 687, 1185, 1222
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 5 cut(s) 646, 681, 850, 1002, 1083
Bst4CI ACNGT 3 cut(s) 377, 1071, 1253
Bst6I CTCTTC 2 cut(s) 225, 288
BstAPI GCANNNNNTGC 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 897
BstC8I GCNNGC 3 cut(s) 178, 323, 726
BstDEI CTNAG 3 cut(s) 20, 757, 1130
BstDSI CCRYGG 2 cut(s) 373, 474
BstF5I GGATG 3 cut(s) 512, 832, 886
BstFNI CGCG 1 cut(s) 579
BstKTI GATC 5 cut(s) 189, 577, 690, 1188, 1225
BstMAI GTCTC 2 cut(s) 227, 1133
BstMBI GATC 5 cut(s) 186, 574, 687, 1185, 1222
BstMCI CGRYCG 2 cut(s) 379, 1188
BstMWI GCNNNNNNNGC 4 cut(s) 21, 223, 650, 1126
BstNI CCWGG 5 cut(s) 646, 681, 850, 1002, 1083
BstSCI CCNGG 5 cut(s) 644, 679, 848, 1000, 1081
BstSFI CTRYAG 3 cut(s) 158, 174, 569
BstSLI GKGCMC 2 cut(s) 817, 951
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 5 cut(s) 49, 141, 144, 555, 1107
BstX2I RGATCY 1 cut(s) 687
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 1 cut(s) 687
BsuRI GGCC 1 cut(s) 180
BtgI CCRYGG 2 cut(s) 373, 474
BtrI CACGTC 1 cut(s) 545
BtsCI GGATG 3 cut(s) 512, 832, 886
BtsI GCAGTG 2 cut(s) 603, 1246
BtsIMutI CAGTG 3 cut(s) 156, 603, 1246
Cac8I GCNNGC 3 cut(s) 178, 323, 726
CaiI CAGNNNCTG 1 cut(s) 706
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 4 cut(s) 447, 846, 956, 979
CsiI ACCWGGT 2 cut(s) 848, 1000
Csp6I GTAC 3 cut(s) 48, 898, 1151
CspAI ACCGGT 1 cut(s) 439
CviAII CATG 7 cut(s) 223, 429, 475, 503, 593, 763, 907
CviQI GTAC 3 cut(s) 48, 898, 1151
DdeI CTNAG 3 cut(s) 20, 757, 1130
DpnI GATC 5 cut(s) 188, 576, 689, 1187, 1224
DpnII GATC 5 cut(s) 186, 574, 687, 1185, 1222
DraIII CACNNNGTG 1 cut(s) 821
Eam1104I CTCTTC 2 cut(s) 225, 288
EarI CTCTTC 2 cut(s) 225, 288
Eco130I CCWWGG 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 496
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 4 cut(s) 447, 846, 956, 979
Eco57I CTGAAG 2 cut(s) 660, 1109
Eco88I CYCGRG 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 447
EcoRI GAATTC 3 cut(s) 389, 555, 781
EcoRII CCWGG 5 cut(s) 644, 679, 848, 1000, 1081
EcoT14I CCWWGG 1 cut(s) 474
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 7 cut(s) 226, 432, 478, 506, 596, 766, 910
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 292, 324
FaqI GGGAC 2 cut(s) 942, 1080
FatI CATG 7 cut(s) 222, 428, 474, 502, 592, 762, 906
FauI CCCGC 2 cut(s) 20, 572
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 63, 155, 158, 569, 1121
FokI GGATG 3 cut(s) 519, 839, 873
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 5 cut(s) 63, 155, 158, 569, 1121
FspBI CTAG 1 cut(s) 59
GluI GCNGC 5 cut(s) 63, 155, 158, 569, 1121
GsaI CCCAGC 1 cut(s) 638
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 440, 982
Hin1II CATG 7 cut(s) 226, 432, 478, 506, 596, 766, 910
HinfI GANTC 9 cut(s) 107, 163, 303, 481, 517, 536, 703, 883, 1179
HpaII CCGG 2 cut(s) 440, 982
HphI GGTGA 3 cut(s) 429, 454, 695
Hpy166II GTNNAC 3 cut(s) 754, 815, 1153
Hpy188I TCNGA 7 cut(s) 112, 196, 318, 352, 491, 561, 1222
Hpy188III TCNNGA 9 cut(s) 386, 523, 525, 540, 625, 972, 982, 1101, 1183
Hpy8I GTNNAC 3 cut(s) 754, 815, 1153
Hpy99I CGWCG 2 cut(s) 546, 1049
HpyAV CCTTC 4 cut(s) 153, 655, 902, 1187
HpyCH4III ACNGT 3 cut(s) 377, 1071, 1253
HpyCH4IV ACGT 1 cut(s) 544
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 223, 650, 1126
HpyF3I CTNAG 3 cut(s) 20, 757, 1130
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 7 cut(s) 226, 432, 478, 506, 596, 766, 910
Kpn2I TCCGGA 1 cut(s) 981
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 5 cut(s) 186, 574, 687, 1185, 1222
LmnI GCTCC 2 cut(s) 145, 318
Lsp1109I GCAGC 5 cut(s) 49, 141, 144, 555, 1107
LweI GCATC 3 cut(s) 102, 497, 842
MabI ACCWGGT 2 cut(s) 848, 1000
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 5 cut(s) 548, 598, 1004, 1180, 1241
MalI GATC 5 cut(s) 188, 576, 689, 1187, 1224
MboI GATC 5 cut(s) 186, 574, 687, 1185, 1222
MboII GAAGA 5 cut(s) 34, 64, 242, 305, 1202
MflI RGATCY 1 cut(s) 687
MhlI GDGCHC 3 cut(s) 496, 817, 951
MlyI GAGTC 5 cut(s) 101, 157, 490, 530, 1188
MroI TCCGGA 1 cut(s) 981
MroXI GAANNNNTTC 1 cut(s) 785
MseI TTAA 5 cut(s) 396, 854, 1074, 1214, 1258
MslI CAYNNNNRTG 2 cut(s) 378, 501
MspA1I CMGCKG 3 cut(s) 568, 638, 1134
MspI CCGG 2 cut(s) 440, 982
MspR9I CCNGG 5 cut(s) 646, 681, 850, 1002, 1083
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 5 cut(s) 646, 681, 850, 1002, 1083
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 4 cut(s) 21, 223, 650, 1126
NcoI CCATGG 1 cut(s) 474
NdeII GATC 5 cut(s) 186, 574, 687, 1185, 1222
NlaIII CATG 7 cut(s) 226, 432, 478, 506, 596, 766, 910
NlaIV GGNNCC 1 cut(s) 958
NmeAIII GCCGAG 1 cut(s) 1202
NmuCI GTSAC 3 cut(s) 598, 1180, 1241
OliI CACNNNNGTG 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 523
PctI GAATGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 4 cut(s) 303, 517, 703, 883
PinAI ACCGGT 1 cut(s) 439
PkrI GCNGC 5 cut(s) 64, 156, 159, 570, 1122
Ple19I CGATCG 1 cut(s) 1188
PleI GAGTC 5 cut(s) 101, 157, 489, 530, 1187
PpsI GAGTC 5 cut(s) 101, 157, 489, 530, 1187
PpuMI RGGWCCY 1 cut(s) 447
PshBI ATTAAT 1 cut(s) 1214
Psp5II RGGWCCY 1 cut(s) 447
Psp6I CCWGG 5 cut(s) 644, 679, 848, 1000, 1081
PspFI CCCAGC 1 cut(s) 634
PspGI CCWGG 5 cut(s) 644, 679, 848, 1000, 1081
PspN4I GGNNCC 1 cut(s) 958
PspPI GGNCC 4 cut(s) 447, 846, 956, 979
PspPPI RGGWCCY 1 cut(s) 447
PstI CTGCAG 3 cut(s) 162, 178, 573
PstNI CAGNNNCTG 1 cut(s) 706
PsuI RGATCY 1 cut(s) 687
PvuI CGATCG 1 cut(s) 1188
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 3 cut(s) 49, 899, 1152
RsaNI GTAC 3 cut(s) 48, 898, 1151
RseI CAYNNNNRTG 2 cut(s) 378, 501
SaqAI TTAA 5 cut(s) 396, 854, 1074, 1214, 1258
SatI GCNGC 5 cut(s) 63, 155, 158, 569, 1121
Sau3AI GATC 5 cut(s) 186, 574, 687, 1185, 1222
Sau96I GGNCC 4 cut(s) 447, 846, 956, 979
SchI GAGTC 5 cut(s) 101, 157, 490, 530, 1188
ScrFI CCNGG 5 cut(s) 646, 681, 850, 1002, 1083
SduI GDGCHC 3 cut(s) 496, 817, 951
SexAI ACCWGGT 2 cut(s) 848, 1000
SfaNI GCATC 3 cut(s) 102, 497, 842
SfcI CTRYAG 3 cut(s) 158, 174, 569
Sfr274I CTCGAG 1 cut(s) 523
SgrAI CRCCGGYG 1 cut(s) 439
SinI GGWCC 4 cut(s) 447, 846, 956, 979
SlaI CTCGAG 1 cut(s) 523
SmiMI CAYNNNNRTG 2 cut(s) 378, 501
SmlI CTYRAG 2 cut(s) 239, 523
SmoI CTYRAG 2 cut(s) 239, 523
SsiI CCGC 4 cut(s) 13, 566, 579, 1134
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 5 cut(s) 644, 679, 848, 1000, 1081
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 377, 1071, 1253
TaiI ACGT 1 cut(s) 547
TaqI TCGA 4 cut(s) 524, 1047, 1102, 1188
TatI WGTACW 2 cut(s) 47, 897
TfiI GAWTC 4 cut(s) 303, 517, 703, 883
Tru1I TTAA 5 cut(s) 396, 854, 1074, 1214, 1258
Tru9I TTAA 5 cut(s) 396, 854, 1074, 1214, 1258
TscAI CASTG 3 cut(s) 156, 603, 1246
TseFI GTSAC 3 cut(s) 598, 1180, 1241
TseI GCWGC 5 cut(s) 62, 154, 157, 568, 1120
Tsp45I GTSAC 3 cut(s) 598, 1180, 1241
TspDTI ATGAA 8 cut(s) 26, 64, 581, 674, 760, 774, 895, 896
TspRI CASTG 3 cut(s) 156, 603, 1246
VneI GTGCAC 1 cut(s) 813
VpaK11BI GGWCC 4 cut(s) 447, 846, 956, 979
VspI ATTAAT 1 cut(s) 1214
XapI RAATTY 8 cut(s) 32, 255, 332, 389, 555, 781, 902, 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XhoI CTCGAG 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.