Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Forward (+)

16055289 .. 16058014

Gene Structure 2726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCAAAGCGACAACTGTTGATGCTGGGTATTAGAACTAGCTTTCATACTATCGCCGCCGTGCTTGTGGCCGGATTAATATTCACTGCCGTGTTTTTGTCCAGAAACAGTTTGCCAAAGGAAAATCCTCAAAGCCACGGTGTTACGGATCGCGGAGGGGACAGTGGCAGAGAATGTAATTTGTTCGAAGGGAAATGGGTATTTGATAACGTATCATACCCTCTTTATAAAGAAGAAGATTGCAAGTTCATGTCTGACCAGTTGGCTTGTGAGAAGTTTGGGAGGAAAGATCTGAGTTACAAATTCTGGAGGTGGCAACCTCACACGTGTGATCTTCCCAGGTTTAATGGAACGAAGTTGCTGGAGAGGCTAAGAAATAAGAGGATGGTGTACGTAGGAGACTCTCTGAACAGAGGCCAATGGGTATCAATGGTGTGTATGGTTAGTTCGGTAATTACAAACCCAAAGGCGATGTATATGCACAACAATGGCTCTAACCTCATCACGTTCAAAGCTCTCGAATACAATGCTACAATAGACTACTATTGGGCTCCTTTGCTGGTGGAATCCAACTCGGACGACCCGACAAACCATAGATTCCCCGATCGGATAGTTCGGATCCAATCAATAGAAAAACATGCAAGGCATTGGACGAACTCTGATATCATTGTTTTCAACTCTTACTTATGGTGGAGAATGCCTCATATCAAGTCACTGTGGGGATCGTTTGAGAAATTAGATGGAATATACAAGGAAGTGGAGATGGTGAGAGTTTATGAAATGGCTTTGCAAACACTGTCTCAGTGGTTGGAGGTTCACGTTAACCCCAATATTACCAAACTTTTCTTCATGTCCATGTCTCCCACCCATGAAAGGGCTGAAGAATGGGGAGGAATACTTAATCAGAACTGTTATGGAGAAGCTAGTCTAATAGATAAAGAAGGATATACTGGAAGAGGGTCAGATCCAAAGATGATGAGAGTCTTAGAAAATGTGCTTGACGGGCTAAAAAATCGAGGATTAAACATGCAGATGATAAACATTACGCAACTATCAGAGTATCGAAAAGAAGGTCATCCTTCGATCTACAGAAAACAATGGGGAACAGTGAAGGAAAATGAAATCTCGAATCCAAGTAGTAACGCAGATTGTATACATTGGTGTTTGCCTGGAGTTCCTGATGTTTGGAATGAACTCCTTTATGCTTATATTCTTGACCATCATTCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

410

Amino Acids

47.66

Weight (kDa)

7.64

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	2 - 28	2e-07	PMR5 N terminal Domain
PC-Esterase	PF13839	29 - 319	8.8e-90	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	1153
AccII	CGCG	1 cut(s)	153
AciI	CCGC	2 cut(s)	57, 153
AclWI	GGATC	5 cut(s)	156, 613, 626, 730, 959
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	900
AcvI	CACGTG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	873, 874
AflIII	ACRYGT	2 cut(s)	324, 326
AgsI	TTSAA	2 cut(s)	511, 676
AjnI	CCWGG	2 cut(s)	338, 1168
AjuI	GAANNNNNNNTTGG	2 cut(s)	830, 862
AleI	CACNNNNGTG	2 cut(s)	89, 327
AluBI	AGCT	3 cut(s)	42, 515, 923
AluI	AGCT	3 cut(s)	42, 515, 923
Alw26I	GTCTC	3 cut(s)	393, 804, 864
AlwI	GGATC	5 cut(s)	156, 613, 626, 730, 959
AoxI	GGCC	2 cut(s)	69, 415
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	2 cut(s)	1057, 1089
AseI	ATTAAT	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	778
AsuII	TTCGAA	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	553
BbrPI	CACGTG	1 cut(s)	327
BccI	CCATC	4 cut(s)	379, 734, 757, 1227
BceAI	ACGGC	2 cut(s)	44, 74
BcgI	CGANNNNNNTGC	4 cut(s)	460, 494, 509, 543
BciT130I	CCWGG	2 cut(s)	340, 1170
BcoDI	GTCTC	3 cut(s)	393, 804, 864
BfaI	CTAG	3 cut(s)	39, 924, 1227
BfmI	CTRYAG	1 cut(s)	1087
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	340, 1170
BmiI	GGNNCC	2 cut(s)	552, 620
BmrFI	CCNGG	2 cut(s)	340, 1170
BmsI	GCATC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpmI	CTGGAG	3 cut(s)	328, 383, 1191
Bpu14I	TTCGAA	1 cut(s)	186
BsaAI	YACGTR	2 cut(s)	327, 394
BsaJI	CCNNGG	2 cut(s)	136, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	873, 874
Bse1I	ACTGG	2 cut(s)	259, 955
BseBI	CCWGG	2 cut(s)	340, 1170
BseDI	CCNNGG	2 cut(s)	136, 338
BseGI	GGATG	2 cut(s)	390, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	873, 874
BseMII	CTCAG	2 cut(s)	284, 815
BseNI	ACTGG	2 cut(s)	259, 955
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	2 cut(s)	71, 417
BsiEI	CGRYCG	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	873, 874
BsmAI	GTCTC	3 cut(s)	393, 804, 864
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	2 cut(s)	71, 417
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	8 cut(s)	148, 289, 331, 604, 618, 722, 964, 1083
BspACI	CCGC	2 cut(s)	57, 153
BspANI	GGCC	2 cut(s)	71, 417
BspCNI	CTCAG	2 cut(s)	285, 814
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	552, 620
BspPI	GGATC	5 cut(s)	156, 613, 626, 730, 959
BspT104I	TTCGAA	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	259, 955
BssECI	CCNNGG	2 cut(s)	136, 338
BssMI	GATC	8 cut(s)	148, 289, 331, 604, 618, 722, 964, 1083
BssNAI	GTATAC	1 cut(s)	1154
Bst1107I	GTATAC	1 cut(s)	1154
Bst2UI	CCWGG	2 cut(s)	340, 1170
Bst4CI	ACNGT	8 cut(s)	18, 110, 140, 164, 717, 798, 911, 1108
Bst6I	CTCTTC	1 cut(s)	949
BstBAI	YACGTR	2 cut(s)	327, 394
BstBI	TTCGAA	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	293, 371, 801, 985
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	390, 1075
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	8 cut(s)	151, 292, 334, 607, 621, 725, 967, 1086
BstMAI	GTCTC	3 cut(s)	393, 804, 864
BstMBI	GATC	8 cut(s)	148, 289, 331, 604, 618, 722, 964, 1083
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 1003
BstNI	CCWGG	2 cut(s)	340, 1170
BstNSI	RCATGY	2 cut(s)	641, 1030
BstSCI	CCNGG	2 cut(s)	338, 1168
BstSFI	CTRYAG	1 cut(s)	1087
BstSNI	TACGTA	1 cut(s)	394
BstUI	CGCG	1 cut(s)	153
BstX2I	RGATCY	3 cut(s)	289, 618, 964
BstYI	RGATCY	3 cut(s)	289, 618, 964
BstZ17I	GTATAC	1 cut(s)	1154
BsuRI	GGCC	2 cut(s)	71, 417
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	390, 1075
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	6 cut(s)	84, 169, 713, 794, 809, 1113
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	6 cut(s)	250, 638, 850, 856, 869, 1027
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	4 cut(s)	293, 371, 801, 985
DpnI	GATC	8 cut(s)	150, 291, 333, 606, 620, 724, 966, 1085
DpnII	GATC	8 cut(s)	148, 289, 331, 604, 618, 722, 964, 1083
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	949
EarI	CTCTTC	1 cut(s)	949
Eco105I	TACGTA	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	553
Eco32I	GATATC	1 cut(s)	664
Eco57I	CTGAAG	1 cut(s)	900
Eco72I	CACGTG	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	338, 1168
EcoRV	GATATC	1 cut(s)	664
EcoT38I	GRGCYC	1 cut(s)	553
FaeI	CATG	6 cut(s)	253, 641, 853, 859, 872, 1030
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	6 cut(s)	249, 637, 849, 855, 868, 1026
FblI	GTMKAC	1 cut(s)	1153
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	397, 1062
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	3 cut(s)	39, 924, 1227
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	3 cut(s)	328, 383, 1191
HaeIII	GGCC	2 cut(s)	71, 417
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	6 cut(s)	253, 641, 853, 859, 872, 1030
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HinfI	GANTC	5 cut(s)	401, 566, 597, 981, 1129
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	778
Hpy166II	GTNNAC	4 cut(s)	391, 817, 823, 1154
Hpy188III	TCNNGA	6 cut(s)	102, 307, 518, 1126, 1178, 1214
Hpy8I	GTNNAC	4 cut(s)	391, 817, 823, 1154
HpyAV	CCTTC	5 cut(s)	182, 935, 1064, 1089, 1105
HpyCH4III	ACNGT	8 cut(s)	18, 110, 140, 164, 717, 798, 911, 1108
HpyCH4IV	ACGT	5 cut(s)	210, 326, 393, 506, 819
HpyCH4V	TGCA	5 cut(s)	243, 481, 641, 790, 1030
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 1003
HpyF3I	CTNAG	4 cut(s)	293, 371, 801, 985
HpySE526I	ACGT	5 cut(s)	210, 326, 393, 506, 819
Hsp92II	CATG	6 cut(s)	253, 641, 853, 859, 872, 1030
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	8 cut(s)	148, 289, 331, 604, 618, 722, 964, 1083
LmnI	GCTCC	1 cut(s)	556
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	3 cut(s)	39, 924, 1227
MaeII	ACGT	5 cut(s)	210, 326, 393, 506, 819
MaeIII	GTNAC	4 cut(s)	142, 296, 711, 1139
MalI	GATC	8 cut(s)	150, 291, 333, 606, 620, 724, 966, 1085
MboI	GATC	8 cut(s)	148, 289, 331, 604, 618, 722, 964, 1083
MboII	GAAGA	6 cut(s)	245, 248, 326, 838, 893, 966
MflI	RGATCY	3 cut(s)	289, 618, 964
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	4 cut(s)	178, 302, 453, 734
MlyI	GAGTC	2 cut(s)	395, 990
MmeI	TCCRAC	2 cut(s)	594, 789
MseI	TTAA	5 cut(s)	77, 345, 822, 900, 1022
MslI	CAYNNNNRTG	5 cut(s)	89, 327, 486, 854, 1031
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	340, 1170
Mva1269I	GAATGC	1 cut(s)	702
MvaI	CCWGG	2 cut(s)	340, 1170
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	367, 1003
NdeII	GATC	8 cut(s)	148, 289, 331, 604, 618, 722, 964, 1083
NlaIII	CATG	6 cut(s)	253, 641, 853, 859, 872, 1030
NlaIV	GGNNCC	2 cut(s)	552, 620
NmuCI	GTSAC	1 cut(s)	711
NspI	RCATGY	2 cut(s)	641, 1030
NspV	TTCGAA	1 cut(s)	186
OliI	CACNNNNGTG	2 cut(s)	89, 327
PcsI	WCGNNNNNNNCGW	1 cut(s)	581
PctI	GAATGC	1 cut(s)	702
PfeI	GAWTC	3 cut(s)	566, 597, 1129
PkrI	GCNGC	1 cut(s)	58
Ple19I	CGATCG	1 cut(s)	607
PleI	GAGTC	2 cut(s)	395, 989
PmaCI	CACGTG	1 cut(s)	327
PmlI	CACGTG	1 cut(s)	327
PpsI	GAGTC	2 cut(s)	395, 989
Ppu21I	YACGTR	2 cut(s)	327, 394
PshBI	ATTAAT	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	338, 1168
PspCI	CACGTG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	2 cut(s)	338, 1168
PspN4I	GGNNCC	2 cut(s)	552, 620
PsrI	GAACNNNNNNTAC	2 cut(s)	430, 462
PsuI	RGATCY	3 cut(s)	289, 618, 964
PvuI	CGATCG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	5 cut(s)	89, 327, 486, 854, 1031
SaqAI	TTAA	5 cut(s)	77, 345, 822, 900, 1022
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	8 cut(s)	148, 289, 331, 604, 618, 722, 964, 1083
SchI	GAGTC	2 cut(s)	395, 990
ScrFI	CCNGG	2 cut(s)	340, 1170
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	1087
SfuI	TTCGAA	1 cut(s)	186
SmiMI	CAYNNNNRTG	5 cut(s)	89, 327, 486, 854, 1031
SnaBI	TACGTA	1 cut(s)	394
Sse9I	AATT	4 cut(s)	178, 302, 453, 734
SsiI	CCGC	2 cut(s)	57, 153
SspI	AATATT	2 cut(s)	81, 832
SspMI	CTAG	3 cut(s)	39, 924, 1227
StyD4I	CCNGG	2 cut(s)	338, 1168
TaaI	ACNGT	8 cut(s)	18, 110, 140, 164, 717, 798, 911, 1108
TaiI	ACGT	5 cut(s)	213, 329, 396, 509, 822
TaqI	TCGA	6 cut(s)	186, 519, 1015, 1063, 1082, 1127
TasI	AATT	4 cut(s)	178, 302, 453, 734
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	566, 597, 1129
Tru1I	TTAA	5 cut(s)	77, 345, 822, 900, 1022
Tru9I	TTAA	5 cut(s)	77, 345, 822, 900, 1022
TscAI	CASTG	6 cut(s)	91, 169, 720, 801, 809, 1113
TseFI	GTSAC	1 cut(s)	711
Tsp45I	GTSAC	1 cut(s)	711
TspDTI	ATGAA	7 cut(s)	35, 238, 792, 838, 885, 1134, 1206
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	6 cut(s)	91, 169, 720, 801, 809, 1113
VspI	ATTAAT	1 cut(s)	77
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	2 cut(s)	641, 1030
XmiI	GTMKAC	1 cut(s)	1153
XspI	CTAG	3 cut(s)	39, 924, 1227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.