Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Forward (+)

4120629 .. 4124194

Gene Structure 3566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAAGACGAAGACAGAGTGCAAAATACAGAGTCATCCCAAAAGAACAAGACGGTGATAAAGATACCATCTTTTCAAGAAGTTATAGAGAGTTCGCAGTCAAAATCAACCCCACCTTCTCTGTTTGCTCCCTCCAAAACCTTTTCTCAAGCTTTTGCCTTTGTCAAATCCTCTGAGTTTTACTCCCCCCCAAAACCCCCAGAAACTTCTAACTCAAGGGAAACTGGGCAATCTGGTGTTCCACCATCATCTGCTCCTACCAATGCTGTTGCATCTTCGCAGCGTCGCAATGCGATTCTTGTGAGCAATAGACAGAAGGGAAACCCCTTGCTGAAACATATCAGAAATGTGAGGTGGGAATTTGCAGATATTATTTGTGACTACTTACTCGGACAAAGCTCATGTGCACTCTATCTAAGTCTTCGTTATCATCTGCTGCATCCAGATTATCTATATTACCGCATAAGAGAATTGCAAAAGAACTACAAGCTTCGGGTTGTACTTTGCCATGTTGATGTGGAGGATGTAGTTAAGCCGTTACTTGAAGTTACTAAAACTGCCATGCTTCATGAGTGCACCCTATTATGTGCTTGGAGCTTGGAGGAATGTGGACGCTACTTGGAGACGATAAAAGTCTATGAAAACAAGCCTGCTGACATTATTCAAGGTCAAATGGATACAGACTATTTATCACGGCTAAATCATGCATTAACGACTGTTCGACATGTTAACAAGACTGATGTTGTCACCCTTGGAACTACTTTTGGGTCTCTTGCTCATGTCATGGATGTTTCGATGGAAGATCTAGCTCGTTGCCCTGGCATTGGAGAGCGCAAGGTAAAACGTTTGTATGACACATTTCATGAACCATTTAAGCGTGTGGTTGCCAGCCGCCCTGCTGTATCAGAATCTTCTCCCCCGAACAATGCTGAACCTTGTTCAGTTACCGAAGATAAAGAAATAAAGGATACTGAAGAAGAAAACAAACGCAGGAAGAAAGAACCAGAACCGACTGTTAAGTCTGCCCTGTCTGCTGCTTTTGCCAAATATGCTGACAGAGTTCAAAAAAAGAAGTCACCAGAGTTGAAGAATGGAGATACAAGTGTTGCCATGGAAGCTGAAGCTGAAAAGTGTAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

380

Amino Acids

42.84

Weight (kDa)

8.24

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad10	PF03834	99 - 211	1.9e-46	Binding domain of DNA repair protein Ercc1 (rad10/Swi10)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1018
AciI	CCGC	2 cut(s)	460, 892
AclI	AACGTT	1 cut(s)	844
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	2 cut(s)	993, 1140
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	1 cut(s)	824
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	5 cut(s)	77, 545, 665, 1064, 1087
AjnI	CCWGG	1 cut(s)	817
AluBI	AGCT	7 cut(s)	152, 399, 490, 597, 809, 1118, 1124
AluI	AGCT	7 cut(s)	152, 399, 490, 597, 809, 1118, 1124
Alw21I	GWGCWC	2 cut(s)	409, 578
Alw26I	GTCTC	2 cut(s)	617, 774
Alw44I	GTGCAC	2 cut(s)	405, 574
ApaLI	GTGCAC	2 cut(s)	405, 574
ApeKI	GCWGC	3 cut(s)	280, 436, 1034
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	834
AsuHPI	GGTGA	3 cut(s)	67, 739, 1068
BaeGI	GKGCMC	2 cut(s)	409, 578
BaeI	ACNNNNGTAYC	2 cut(s)	1089, 1122
BbsI	GAAGAC	3 cut(s)	12, 18, 413
Bbv12I	GWGCWC	2 cut(s)	409, 578
BbvI	GCAGC	3 cut(s)	292, 423, 1021
BccI	CCATC	3 cut(s)	76, 253, 790
BceAI	ACGGC	2 cut(s)	520, 710
BciT130I	CCWGG	1 cut(s)	819
BciVI	GTATCC	2 cut(s)	670, 961
BcoDI	GTCTC	2 cut(s)	617, 774
BfaI	CTAG	1 cut(s)	806
BfuI	GTATCC	2 cut(s)	670, 961
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	4 cut(s)	281, 437, 892, 1035
BlsI	GCNGC	4 cut(s)	282, 438, 893, 1036
Bme1390I	CCNGG	1 cut(s)	819
BmrFI	CCNGG	1 cut(s)	819
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	281, 448
BmuI	ACTGGG	1 cut(s)	234
BpiI	GAAGAC	3 cut(s)	12, 18, 413
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpuEI	CTTGAG	2 cut(s)	132, 199
BsaI	GGTCTC	1 cut(s)	774
BsaJI	CCNNGG	3 cut(s)	751, 817, 1110
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	819
BseDI	CCNNGG	3 cut(s)	751, 817, 1110
BseGI	GGATG	4 cut(s)	35, 439, 529, 793
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	229
BseSI	GKGCMC	2 cut(s)	409, 578
BseXI	GCAGC	3 cut(s)	292, 423, 1021
BsiHKAI	GWGCWC	2 cut(s)	409, 578
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	2 cut(s)	617, 774
BsmBI	CGTCTC	1 cut(s)	617
Bso31I	GGTCTC	1 cut(s)	774
Bsp1286I	GDGCHC	2 cut(s)	409, 578
Bsp143I	GATC	1 cut(s)	802
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	2 cut(s)	460, 892
BspCNI	CTCAG	1 cut(s)	166
BspHI	TCATGA	2 cut(s)	568, 862
BspTNI	GGTCTC	1 cut(s)	774
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	751, 817, 1110
BssMI	GATC	1 cut(s)	802
BssT1I	CCWWGG	2 cut(s)	751, 1110
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	3 cut(s)	55, 718, 1015
BstC8I	GCNNGC	2 cut(s)	651, 889
BstDEI	CTNAG	2 cut(s)	174, 416
BstDSI	CCRYGG	1 cut(s)	1110
BstF5I	GGATG	4 cut(s)	35, 439, 529, 793
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	1 cut(s)	805
BstMAI	GTCTC	2 cut(s)	617, 774
BstMBI	GATC	1 cut(s)	802
BstMWI	GCNNNNNNNGC	4 cut(s)	1031, 1040, 1049, 1115
BstNI	CCWGG	1 cut(s)	819
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	817
BstSLI	GKGCMC	2 cut(s)	409, 578
BstV1I	GCAGC	3 cut(s)	292, 423, 1021
BstV2I	GAAGAC	3 cut(s)	12, 18, 413
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuI	GTATCC	2 cut(s)	670, 961
BtgI	CCRYGG	1 cut(s)	1110
BtsCI	GGATG	4 cut(s)	35, 439, 529, 793
Cac8I	GCNNGC	2 cut(s)	651, 889
CciI	TCATGA	2 cut(s)	568, 862
CfoI	GCGC	1 cut(s)	834
CseI	GACGC	2 cut(s)	272, 621
Csp6I	GTAC	1 cut(s)	500
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	2 cut(s)	174, 416
DpnI	GATC	1 cut(s)	804
DpnII	GATC	1 cut(s)	802
DrdI	GACNNNNNNGTC	1 cut(s)	1018
DseDI	GACNNNNNNGTC	1 cut(s)	1018
Eco130I	CCWWGG	2 cut(s)	751, 1110
Eco31I	GGTCTC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	993, 1140
EcoRII	CCWGG	1 cut(s)	817
EcoT14I	CCWWGG	2 cut(s)	751, 1110
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	2 cut(s)	751, 1110
Esp3I	CGTCTC	1 cut(s)	617
Fnu4HI	GCNGC	4 cut(s)	281, 437, 892, 1035
FokI	GGATG	4 cut(s)	22, 426, 536, 800
Fsp4HI	GCNGC	4 cut(s)	281, 437, 892, 1035
FspBI	CTAG	1 cut(s)	806
GlaI	GCGC	1 cut(s)	833
GluI	GCNGC	4 cut(s)	281, 437, 892, 1035
HgaI	GACGC	2 cut(s)	272, 621
HhaI	GCGC	1 cut(s)	834
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HindIII	AAGCTT	2 cut(s)	150, 488
HinfI	GANTC	3 cut(s)	32, 295, 908
HpaI	GTTAAC	1 cut(s)	730
HphI	GGTGA	3 cut(s)	67, 739, 1068
Hpy166II	GTNNAC	4 cut(s)	407, 576, 611, 730
Hpy188I	TCNGA	4 cut(s)	175, 344, 392, 907
Hpy188III	TCNNGA	4 cut(s)	77, 443, 569, 863
Hpy8I	GTNNAC	4 cut(s)	407, 576, 611, 730
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	126, 310
HpyCH4III	ACNGT	3 cut(s)	55, 718, 1015
HpyCH4IV	ACGT	1 cut(s)	844
HpyCH4V	TGCA	8 cut(s)	22, 272, 365, 407, 439, 475, 576, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1031, 1040, 1049, 1115
HpyF3I	CTNAG	2 cut(s)	174, 416
HpySE526I	ACGT	1 cut(s)	844
HspAI	GCGC	1 cut(s)	832
KspAI	GTTAAC	1 cut(s)	730
Kzo9I	GATC	1 cut(s)	802
LmnI	GCTCC	3 cut(s)	133, 259, 594
Lsp1109I	GCAGC	3 cut(s)	292, 423, 1021
LweI	GCATC	2 cut(s)	281, 448
MaeI	CTAG	1 cut(s)	806
MaeII	ACGT	1 cut(s)	844
MaeIII	GTNAC	6 cut(s)	377, 537, 547, 745, 943, 1074
MalI	GATC	1 cut(s)	804
MboI	GATC	1 cut(s)	802
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	2 cut(s)	409, 578
MluCI	AATT	2 cut(s)	359, 470
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	5 cut(s)	142, 181, 345, 514, 595
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	5 cut(s)	531, 710, 729, 873, 1017
MslI	CAYNNNNRTG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	819
MvaI	CCWGG	1 cut(s)	819
MwoI	GCNNNNNNNGC	4 cut(s)	1031, 1040, 1049, 1115
NcoI	CCATGG	1 cut(s)	1110
NdeII	GATC	1 cut(s)	802
NmuCI	GTSAC	3 cut(s)	377, 745, 1074
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	728
PagI	TCATGA	2 cut(s)	568, 862
PciI	ACATGT	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	295, 908
PkrI	GCNGC	4 cut(s)	282, 438, 893, 1036
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	724
Psp1406I	AACGTT	1 cut(s)	844
Psp6I	CCWGG	1 cut(s)	817
PspGI	CCWGG	1 cut(s)	817
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	5 cut(s)	531, 710, 729, 873, 1017
SatI	GCNGC	4 cut(s)	281, 437, 892, 1035
Sau3AI	GATC	1 cut(s)	802
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	819
SduI	GDGCHC	2 cut(s)	409, 578
SfaNI	GCATC	2 cut(s)	281, 448
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	2 cut(s)	147, 214
SmoI	CTYRAG	2 cut(s)	147, 214
Sse9I	AATT	2 cut(s)	359, 470
SsiI	CCGC	2 cut(s)	460, 892
SspMI	CTAG	1 cut(s)	806
StyD4I	CCNGG	1 cut(s)	817
StyI	CCWWGG	2 cut(s)	751, 1110
TaaI	ACNGT	3 cut(s)	55, 718, 1015
TaiI	ACGT	1 cut(s)	847
TaqI	TCGA	2 cut(s)	721, 794
TasI	AATT	2 cut(s)	359, 470
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	894
TfiI	GAWTC	2 cut(s)	295, 908
Tru1I	TTAA	5 cut(s)	531, 710, 729, 873, 1017
Tru9I	TTAA	5 cut(s)	531, 710, 729, 873, 1017
TseFI	GTSAC	3 cut(s)	377, 745, 1074
TseI	GCWGC	3 cut(s)	280, 436, 1034
Tsp45I	GTSAC	3 cut(s)	377, 745, 1074
TspDTI	ATGAA	4 cut(s)	557, 654, 851, 879
VneI	GTGCAC	2 cut(s)	405, 574
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	728
XspI	CTAG	1 cut(s)	806
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.