Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Reverse (-)

9439261 .. 9439883

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCCTAGAGTGTATGAAATGGCTCTAAAGACTTGGTCGGATTGGTTGGAGGTCCATGTTAATCCAAACAAGACCAAGTTGTTCTTTGTTAGCATGTCACCTACTCACCAAAGCGCTGAAGAATGGGGTGTGACTACTGGCGAGAATTGCTACGGAGAAACTGAACCGATTAAGGAGGAGGGCTACAAGGGAAACGCATCGGATCCAAAAATGATGCGTGTTGTTGAGAATGTACTTGGGGAGCTGAAAACAAGAGGTTTGGATGTGCAAATACTCAATATAACGCAACTCTCAGAGTACAGAAAAGAAGGTCATCCATCAATTTATAGGAAGCAGTGGGATGCTCTAACAGAAAAGCAATTAGCAAAACCTAGCAGTTTTGCAGATTGTATACATTGGTGCCTCCCTGGAGTGCCAGACGTTTGGAATGAGCTCCTCTATGCTTACATTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

152

Amino Acids

17.58

Weight (kDa)

5.39

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	3 - 148	2.2e-46	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	391
AclWI	GGATC	2 cut(s)	197, 210
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	234, 299
AfeI	AGCGCT	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	2 cut(s)	244, 433
AluI	AGCT	2 cut(s)	244, 433
Alw21I	GWGCWC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	197, 210
Aor51HI	AGCGCT	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	90, 98
AvaII	GGWCC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	435
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	408
BfaI	CTAG	2 cut(s)	6, 372
BfoI	RGCGCY	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	204, 401
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	3 cut(s)	204, 206, 331
BpmI	CTGGAG	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	3 cut(s)	268, 313, 346
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	2 cut(s)	191, 425
BshNI	GGYRCC	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	204, 401
BspPI	GGATC	2 cut(s)	197, 210
BspT107I	GGYRCC	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	1 cut(s)	202
BssNAI	GTATAC	1 cut(s)	392
Bst1107I	GTATAC	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	268, 313, 346
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	202
BstZ17I	GTATAC	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	268, 313, 346
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	233, 298
CviAII	CATG	2 cut(s)	56, 94
CviJI	RGCY	4 cut(s)	23, 183, 244, 433
CviKI_1	RGCY	4 cut(s)	23, 183, 244, 433
CviQI	GTAC	2 cut(s)	233, 298
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	52
Eco47III	AGCGCT	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	2 cut(s)	59, 97
FaiI	YATR	7 cut(s)	15, 57, 95, 281, 327, 392, 441
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	2 cut(s)	55, 93
FblI	GTMKAC	1 cut(s)	391
FokI	GGATG	3 cut(s)	275, 300, 353
FriOI	GRGCYC	1 cut(s)	435
FspBI	CTAG	2 cut(s)	6, 372
GlaI	GCGC	1 cut(s)	115
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	117
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	59, 97
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HphI	GGTGA	2 cut(s)	90, 98
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	3 cut(s)	40, 202, 295
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	268, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	59, 97
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	241, 438
LpnPI	CCDG	4 cut(s)	123, 393, 420, 429
LweI	GCATC	3 cut(s)	204, 206, 331
MaeI	CTAG	2 cut(s)	6, 372
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	96, 130
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	3 cut(s)	145, 321, 359
MmeI	TCCRAC	2 cut(s)	18, 27
MnlI	CCTC	6 cut(s)	43, 169, 172, 248, 413, 446
MseI	TTAA	2 cut(s)	60, 171
MspR9I	CCNGG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	147
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	59, 97
NlaIV	GGNNCC	2 cut(s)	204, 401
NmuCI	GTSAC	2 cut(s)	96, 130
NspI	RCATGY	1 cut(s)	97
PflFI	GACNNNGTC	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	204, 401
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	202
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	234, 299
RsaNI	GTAC	2 cut(s)	233, 298
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	60, 171
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	8 cut(s)	54, 103, 246, 259, 313, 373, 423, 435
SfaNI	GCATC	3 cut(s)	204, 206, 331
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	3 cut(s)	145, 321, 359
SspMI	CTAG	2 cut(s)	6, 372
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	406
TaiI	ACGT	1 cut(s)	423
TasI	AATT	3 cut(s)	145, 321, 359
TatI	WGTACW	2 cut(s)	232, 297
Tru1I	TTAA	2 cut(s)	60, 171
Tru9I	TTAA	2 cut(s)	60, 171
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	2 cut(s)	96, 130
Tsp45I	GTSAC	2 cut(s)	96, 130
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	341
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	52
XceI	RCATGY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	2 cut(s)	6, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.