Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Reverse (-)

9733602 .. 9736995

Gene Structure 3394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG116500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTGCCAAATATCCAAAATGAATCATCAAATGCCTAAGCATAAGCATCAAATAGTTCCTAATCCCAAACCTTGGGGTTCAATCAGAAGCAGCTTGCATTCCCTCATTGCAGTTCTTGTGGCAACTCTTCTCGTTGCAACTGTTTATCTTACCCAAGAATATGGTGTTCAGTTTTTAGAAGATTGTACTGCTTCTACTACAGTGAAAACTTCTGAGGATAGCTGCAATTTGTTTTCAGGGAAATGGGTATTTGATAACCAGTCTTATCCTTTATACAAGGGGTTACAGTGTACTTATATGTCTGACCAATTGGCCTGTGAGAAGTTTGGGAGAAAAGACTTAAGCTTCCAGAACTGGAGATGGCATCCCCATCAATGTGACCTCCCTAGGTTCAATGCCACAGCGTTGCTTGAGAGGCTAAGGAACAAGAGGCTTGTGTATGTTGGGGATTCCTTGAATCGAAATCAATGGGTTTCCATGGTTTGCCTGATAGAGTCAGCTGTTCCTCCAGAGCTCAAGTCCATGTACACCAATGGCTCCTTGACCACCTTCAAAGCAACTGAATACAATGCCACAATTGAGTTCTATTGGGCTCCATTGCTAGTGGAATCGAACTCAGATCACCCGATGAATCACCGGTTACCGGAACGGATTGTTAGGGTTCAGGCAATTGAAAAGCATGCTAGACATTGGACTGATGCAGACTTTCTTGTTTTCAATTCCTATCTTTGGTGGAGAAGGTCCATGATGAGTGTCTTGTGGGGATCTTTTGAAAGCTCTGATGGAATTTACAGAGAGGTTGGGATGCCTAGAGTGTATGAAATGGCTCTAAAGACTTGGTCGGATTGGTTGGAGGTCCATGTTAATCCAAACAAGACCAAGTTGTTCTTTGTTAGCATGTCACCTACTCACCAAAGCGCTGAAGAATGGGGTGTGACTACTGGCGAGAATTGCTACGGAGAAACTGAACCGATTAAGGAGGAGGGCTACAAGGGAAATGCATCGGATCCAAAAATGATGCGTGTTGTTGAGAATGTACTTGGGGAGCTGAAAACAAGAGGTTTGGATGTGCAAATACTCAATATAACGCAACTCTCAGAGTACAGAAAAGAAGGTCATCCATCAATTTATAGGAAGCAGTGGGATGCTCTAACAGAAAAGCAATTAGCAAAACCTAGCAGTTTTGCAGATTGTATACATTGGTGCCTCCCTGGAGTGCCAGACGTTTGGAATGAGCTCCTCTATGCTTACATTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

420

Amino Acids

48.73

Weight (kDa)

6.71

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	74 - 127	3.3e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	128 - 416	9.3e-95	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1203
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	1195
AclWI	GGATC	3 cut(s)	772, 1001, 1014
AcsI	RAATTY	1 cut(s)	786
AcuI	CTGAAG	1 cut(s)	942
AfaI	GTAC	5 cut(s)	187, 292, 527, 1038, 1103
AfeI	AGCGCT	1 cut(s)	919
AfiI	CCNNNNNNNGG	3 cut(s)	72, 643, 729
AflII	CTTAAG	1 cut(s)	340
AgeI	ACCGGT	1 cut(s)	636
AgsI	TTSAA	8 cut(s)	81, 394, 457, 553, 674, 718, 773, 1259
AjnI	CCWGG	1 cut(s)	1210
AluBI	AGCT	8 cut(s)	93, 222, 345, 500, 514, 777, 1048, 1237
AluI	AGCT	8 cut(s)	93, 222, 345, 500, 514, 777, 1048, 1237
Alw21I	GWGCWC	2 cut(s)	516, 1239
AlwI	GGATC	3 cut(s)	772, 1001, 1014
Aor51HI	AGCGCT	1 cut(s)	919
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	90, 222
ApoI	RAATTY	1 cut(s)	786
AsiGI	ACCGGT	1 cut(s)	636
AspA2I	CCTAGG	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	2 cut(s)	741, 856
AsuHPI	GGTGA	4 cut(s)	614, 626, 894, 902
AvaII	GGWCC	2 cut(s)	741, 856
AvrII	CCTAGG	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	1006
BanI	GGYRCC	1 cut(s)	1203
BanII	GRGCYC	3 cut(s)	516, 595, 1239
Bbv12I	GWGCWC	2 cut(s)	516, 1239
BbvI	GCAGC	2 cut(s)	102, 209
BccI	CCATC	4 cut(s)	354, 378, 776, 1129
BciT130I	CCWGG	1 cut(s)	1212
BfaI	CTAG	5 cut(s)	387, 602, 684, 810, 1176
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	921
BfrI	CTTAAG	1 cut(s)	340
BisI	GCNGC	2 cut(s)	91, 223
BlnI	CCTAGG	1 cut(s)	386
BlsI	GCNGC	2 cut(s)	92, 224
Bme1390I	CCNGG	1 cut(s)	1212
Bme18I	GGWCC	2 cut(s)	741, 856
BmgT120I	GGNCC	2 cut(s)	741, 856
BmiI	GGNNCC	4 cut(s)	538, 594, 1008, 1205
BmrFI	CCNGG	1 cut(s)	1212
BmsI	GCATC	7 cut(s)	55, 373, 688, 795, 1008, 1010, 1135
BpmI	CTGGAG	3 cut(s)	376, 492, 1233
Bpu10I	CCTNAGC	2 cut(s)	36, 419
BpuEI	CTTGAG	2 cut(s)	431, 500
BsaJI	CCNNGG	4 cut(s)	71, 386, 477, 1210
BsaWI	WCCGGW	2 cut(s)	636, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 643, 729
Bse118I	RCCGGY	1 cut(s)	636
Bse1I	ACTGG	3 cut(s)	259, 359, 946
Bse3DI	GCAATG	2 cut(s)	105, 596
BseBI	CCWGG	1 cut(s)	1212
BseDI	CCNNGG	4 cut(s)	71, 386, 477, 1210
BseGI	GGATG	5 cut(s)	364, 810, 1072, 1117, 1150
BseLI	CCNNNNNNNGG	3 cut(s)	72, 643, 729
BseMI	GCAATG	2 cut(s)	105, 596
BseMII	CTCAG	3 cut(s)	204, 630, 1110
BseNI	ACTGG	3 cut(s)	259, 359, 946
BseRI	GAGGAG	2 cut(s)	995, 1229
BseXI	GCAGC	2 cut(s)	102, 209
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	1203
BshTI	ACCGGT	1 cut(s)	636
BsiHKAI	GWGCWC	2 cut(s)	516, 1239
BsiSI	CCGG	2 cut(s)	637, 644
BslI	CCNNNNNNNGG	3 cut(s)	72, 643, 729
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	516, 595, 1239
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	619, 764, 1006
Bsp19I	CCATGG	1 cut(s)	477
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	3 cut(s)	205, 629, 1109
BspLI	GGNNCC	4 cut(s)	538, 594, 1008, 1205
BspPI	GGATC	3 cut(s)	772, 1001, 1014
BspT107I	GGYRCC	1 cut(s)	1203
BspTI	CTTAAG	1 cut(s)	340
BsrDI	GCAATG	2 cut(s)	105, 596
BsrFI	RCCGGY	1 cut(s)	636
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	3 cut(s)	259, 359, 946
BssAI	RCCGGY	1 cut(s)	636
BssECI	CCNNGG	4 cut(s)	71, 386, 477, 1210
BssMI	GATC	3 cut(s)	619, 764, 1006
BssNAI	GTATAC	1 cut(s)	1196
BssT1I	CCWWGG	3 cut(s)	71, 386, 477
Bst1107I	GTATAC	1 cut(s)	1196
Bst2UI	CCWGG	1 cut(s)	1212
Bst4CI	ACNGT	3 cut(s)	142, 202, 288
Bst6I	CTCTTC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	95, 681
BstDEI	CTNAG	5 cut(s)	36, 213, 419, 616, 1096
BstDSI	CCRYGG	1 cut(s)	477
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	5 cut(s)	364, 810, 1072, 1117, 1150
BstH2I	RGCGCY	1 cut(s)	921
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	3 cut(s)	622, 767, 1009
BstMBI	GATC	3 cut(s)	619, 764, 1006
BstMWI	GCNNNNNNNGC	2 cut(s)	415, 951
BstNI	CCWGG	1 cut(s)	1212
BstNSI	RCATGY	2 cut(s)	683, 901
BstPI	GGTNACC	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	1210
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	102, 209
BstX2I	RGATCY	2 cut(s)	764, 1006
BstXI	CCANNNNNNTGG	2 cut(s)	161, 1227
BstYI	RGATCY	2 cut(s)	764, 1006
BstZ17I	GTATAC	1 cut(s)	1196
BsuRI	GGCC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	5 cut(s)	364, 810, 1072, 1117, 1150
BtsI	GCAGTG	1 cut(s)	1145
BtsIMutI	CAGTG	3 cut(s)	207, 293, 1145
Cac8I	GCNNGC	2 cut(s)	95, 681
CfoI	GCGC	1 cut(s)	920
Cfr10I	RCCGGY	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	741, 856
Csp6I	GTAC	5 cut(s)	186, 291, 526, 1037, 1102
CspAI	ACCGGT	1 cut(s)	636
CviAII	CATG	6 cut(s)	478, 523, 680, 745, 860, 898
CviQI	GTAC	5 cut(s)	186, 291, 526, 1037, 1102
DdeI	CTNAG	5 cut(s)	36, 213, 419, 616, 1096
DpnI	GATC	3 cut(s)	621, 766, 1008
DpnII	GATC	3 cut(s)	619, 764, 1006
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Ecl136II	GAGCTC	2 cut(s)	514, 1237
Eco130I	CCWWGG	3 cut(s)	71, 386, 477
Eco24I	GRGCYC	3 cut(s)	516, 595, 1239
Eco47I	GGWCC	2 cut(s)	741, 856
Eco47III	AGCGCT	1 cut(s)	919
Eco53kI	GAGCTC	2 cut(s)	514, 1237
Eco57I	CTGAAG	1 cut(s)	942
Eco91I	GGTNACC	1 cut(s)	639
EcoICRI	GAGCTC	2 cut(s)	514, 1237
EcoO65I	GGTNACC	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	1210
EcoT14I	CCWWGG	3 cut(s)	71, 386, 477
EcoT22I	ATGCAT	1 cut(s)	1003
EcoT38I	GRGCYC	3 cut(s)	516, 595, 1239
ErhI	CCWWGG	3 cut(s)	71, 386, 477
FaeI	CATG	6 cut(s)	481, 526, 683, 748, 863, 901
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FatI	CATG	6 cut(s)	477, 522, 679, 744, 859, 897
FblI	GTMKAC	1 cut(s)	1195
Fnu4HI	GCNGC	2 cut(s)	91, 223
FokI	GGATG	5 cut(s)	351, 817, 1079, 1104, 1157
FriOI	GRGCYC	3 cut(s)	516, 595, 1239
Fsp4HI	GCNGC	2 cut(s)	91, 223
FspBI	CTAG	5 cut(s)	387, 602, 684, 810, 1176
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	2 cut(s)	91, 223
GsuI	CTGGAG	3 cut(s)	376, 492, 1233
HaeII	RGCGCY	1 cut(s)	921
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	2 cut(s)	637, 644
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	6 cut(s)	481, 526, 683, 748, 863, 901
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	6 cut(s)	22, 449, 457, 494, 608, 631
HpaII	CCGG	2 cut(s)	637, 644
HphI	GGTGA	4 cut(s)	614, 626, 894, 902
Hpy166II	GTNNAC	3 cut(s)	291, 528, 1196
Hpy188I	TCNGA	8 cut(s)	86, 214, 304, 619, 781, 844, 1006, 1099
Hpy188III	TCNNGA	2 cut(s)	349, 509
Hpy8I	GTNNAC	3 cut(s)	291, 528, 1196
HpyAV	CCTTC	3 cut(s)	559, 732, 1106
HpyCH4III	ACNGT	3 cut(s)	142, 202, 288
HpyCH4IV	ACGT	1 cut(s)	1224
HpyCH4V	TGCA	8 cut(s)	97, 110, 137, 225, 701, 1001, 1072, 1187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	415, 951
HpyF3I	CTNAG	5 cut(s)	36, 213, 419, 616, 1096
HpySE526I	ACGT	1 cut(s)	1224
Hsp92II	CATG	6 cut(s)	481, 526, 683, 748, 863, 901
HspAI	GCGC	1 cut(s)	918
Kzo9I	GATC	3 cut(s)	619, 764, 1006
LmnI	GCTCC	4 cut(s)	542, 598, 1045, 1242
Lsp1109I	GCAGC	2 cut(s)	102, 209
LweI	GCATC	7 cut(s)	55, 373, 688, 795, 1008, 1010, 1135
MaeI	CTAG	5 cut(s)	387, 602, 684, 810, 1176
MaeII	ACGT	1 cut(s)	1224
MaeIII	GTNAC	5 cut(s)	282, 377, 639, 900, 934
MalI	GATC	3 cut(s)	621, 766, 1008
MboI	GATC	3 cut(s)	619, 764, 1006
MboII	GAAGA	3 cut(s)	119, 191, 935
MfeI	CAATTG	3 cut(s)	308, 576, 669
MflI	RGATCY	2 cut(s)	764, 1006
MhlI	GDGCHC	3 cut(s)	516, 595, 1239
MluCI	AATT	9 cut(s)	226, 308, 576, 669, 718, 786, 949, 1125, 1163
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	2 cut(s)	822, 831
Mph1103I	ATGCAT	1 cut(s)	1003
MseI	TTAA	3 cut(s)	341, 864, 975
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	2 cut(s)	637, 644
MspR9I	CCNGG	1 cut(s)	1212
MunI	CAATTG	3 cut(s)	308, 576, 669
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	1212
MwoI	GCNNNNNNNGC	2 cut(s)	415, 951
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	3 cut(s)	619, 764, 1006
NlaIII	CATG	6 cut(s)	481, 526, 683, 748, 863, 901
NlaIV	GGNNCC	4 cut(s)	538, 594, 1008, 1205
NmuCI	GTSAC	3 cut(s)	377, 900, 934
NsiI	ATGCAT	1 cut(s)	1003
NspI	RCATGY	2 cut(s)	683, 901
PaeI	GCATGC	1 cut(s)	683
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	5 cut(s)	22, 449, 457, 608, 631
PflFI	GACNNNGTC	1 cut(s)	838
PflMI	CCANNNNNTGG	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	636
PkrI	GCNGC	2 cut(s)	92, 224
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Psp124BI	GAGCTC	2 cut(s)	516, 1239
Psp6I	CCWGG	1 cut(s)	1210
PspEI	GGTNACC	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	1210
PspN4I	GGNNCC	4 cut(s)	538, 594, 1008, 1205
PspPI	GGNCC	2 cut(s)	741, 856
PsuI	RGATCY	2 cut(s)	764, 1006
PsyI	GACNNNGTC	1 cut(s)	838
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	5 cut(s)	187, 292, 527, 1038, 1103
RsaNI	GTAC	5 cut(s)	186, 291, 526, 1037, 1102
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	2 cut(s)	516, 1239
SaqAI	TTAA	3 cut(s)	341, 864, 975
SatI	GCNGC	2 cut(s)	91, 223
Sau3AI	GATC	3 cut(s)	619, 764, 1006
Sau96I	GGNCC	2 cut(s)	741, 856
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	1212
SduI	GDGCHC	3 cut(s)	516, 595, 1239
SfaNI	GCATC	7 cut(s)	55, 373, 688, 795, 1008, 1010, 1135
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	741, 856
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	3 cut(s)	340, 410, 515
SmoI	CTYRAG	3 cut(s)	340, 410, 515
SphI	GCATGC	1 cut(s)	683
Sse9I	AATT	9 cut(s)	226, 308, 576, 669, 718, 786, 949, 1125, 1163
SspMI	CTAG	5 cut(s)	387, 602, 684, 810, 1176
SstI	GAGCTC	2 cut(s)	516, 1239
StyD4I	CCNGG	1 cut(s)	1210
StyI	CCWWGG	3 cut(s)	71, 386, 477
TaaI	ACNGT	3 cut(s)	142, 202, 288
TaiI	ACGT	1 cut(s)	1227
TaqI	TCGA	2 cut(s)	460, 611
TasI	AATT	9 cut(s)	226, 308, 576, 669, 718, 786, 949, 1125, 1163
TatI	WGTACW	5 cut(s)	185, 290, 525, 1036, 1101
TfiI	GAWTC	5 cut(s)	22, 449, 457, 608, 631
Tru1I	TTAA	3 cut(s)	341, 864, 975
Tru9I	TTAA	3 cut(s)	341, 864, 975
TscAI	CASTG	3 cut(s)	207, 293, 1145
TseFI	GTSAC	3 cut(s)	377, 900, 934
TseI	GCWGC	2 cut(s)	90, 222
Tsp45I	GTSAC	3 cut(s)	377, 900, 934
TspDTI	ATGAA	3 cut(s)	35, 644, 834
TspGWI	ACGGA	2 cut(s)	664, 972
TspRI	CASTG	3 cut(s)	207, 293, 1145
Tth111I	GACNNNGTC	1 cut(s)	838
Van91I	CCANNNNNTGG	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	741, 856
XapI	RAATTY	1 cut(s)	786
XceI	RCATGY	2 cut(s)	683, 901
XmaJI	CCTAGG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	1195
XspI	CTAG	5 cut(s)	387, 602, 684, 810, 1176
Zsp2I	ATGCAT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.