Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Forward (+)

19182719 .. 19186020

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAATCAAATGGCCAAAAAGCAGAAAATTGTGCTTGTTCCCACAAAAACATGGAATATCCGAAGCAGCTTGCATTCCCTCATTGCAATCCTTGTGACTACTGTACTAGTTGCAGCTGTTTATCTAACCCTAGATGGTGGACTGCAACTGTTGTATCAAGATTATTGTCATATAACAACCACACTGGAAACTTCGGCAGCAGCCGCAGCTGGGGAAAACCCTAAATTGCCAAGCAGCAGCAGATGCAATTTGTTTTCAGGGAAATGGGTTTTCGACAACCAGTCTTATCCTCTGTACAAGGAGAAACAGTGCACTTATATGTCAGACCAATTGGCTTGTGAGAAGTTTGGGAGAAAAGACTTGAACTATCAGAACTGGAGGTGGCAGCCTCACCAATGCGACCTCCCTAGGTTCAACGCGACAGCGTTGCTTGAGAGGCTGAGGAATAAGAGGCTTGTGTTTGTTGGGGACTCGTTGAATAGAGGTCAATGGGTTTCTATGGTATGCCTGGTTGACTCAGCCATCAGTCCAAAGCTCAAATCGGTGCAGACAAAATTCAATGGCTCCTTGCACATCTTCAAGGCCACTGAATACAATGCCACAGTTGAGTTCTACTGGGCCCCATTGCTGGTGGAGTCAAACTCCGATGACCCAGTGAACCACCGATTGCCAGATCGGATTGTAAGAGTGCAGGCAATTGAAAAACATGCAAGGCACTGGACGGACGCCGACTTTCTTGTTTTCAATTCATATCTTTGGTGGAGAAGGGACCAAATGAATGTCTTTCTAATGGTACTTCTCTTTCCACTTAATGTCAAAAGACATCCCAAATTAGAACCTTTACTCCTAACCCTAACAAAAAATAAATATATATGCAGTGCTGAAGAATGGGGTAGGGAAAGTGGTGAGAATTGCTACAATGAAACAAAGCCAATCACTGAGGAGGGATATTGGGGAAATGGATCAGATCCCAAAATGCTGCGTTTAGTTGAGAATGCCCTTGATGGACTGAAAGTAAGAGGTTTGGATGTTCAAATGCTCAACATAACACAACTCTCAGAATACAGGAAAGAAGGGCATCCATCAATTTACAGGAAGCAATGGGAGCCTCTGACTGAAGAACAAACATCAAACCCTAGCACTTTTGCAGATTGCATACACTGGTGCCTCCCTGGACTGCCTGACGTGTGGAATGAGATTCTCTATGCTTACATTTTCCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

409

Amino Acids

47.28

Weight (kDa)

8.22

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	81 - 134	2.9e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	135 - 259	2.3e-39	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	294 - 403	6e-31	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1164
AccII	CGCG	1 cut(s)	419
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	962, 970
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	2 cut(s)	903, 1137
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	3 cut(s)	105, 296, 795
AfiI	CCNNNNNNNGG	2 cut(s)	210, 628
AflIII	ACRYGT	1 cut(s)	1185
AgsI	TTSAA	8 cut(s)	364, 415, 478, 559, 580, 701, 745, 1034
AhdI	GACNNNNNGTC	1 cut(s)	280
AhlI	ACTAGT	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	1186
AjnI	CCWGG	2 cut(s)	507, 1171
AloI	GAACNNNNNNTCC	2 cut(s)	828, 860
AluBI	AGCT	4 cut(s)	69, 116, 209, 535
AluI	AGCT	4 cut(s)	69, 116, 209, 535
Alw21I	GWGCWC	1 cut(s)	314
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	962, 970
AoxI	GGCC	3 cut(s)	12, 582, 618
ApaI	GGGCCC	1 cut(s)	622
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	9 cut(s)	66, 113, 197, 200, 206, 234, 237, 385, 979
ApoI	RAATTY	1 cut(s)	554
AspA2I	CCTAGG	1 cut(s)	407
AspS9I	GGNCC	3 cut(s)	618, 619, 769
AsuHPI	GGTGA	2 cut(s)	383, 917
AvaII	GGWCC	1 cut(s)	769
AvrII	CCTAGG	1 cut(s)	407
BaeGI	GKGCMC	2 cut(s)	314, 622
BaeI	ACNNNNGTAYC	2 cut(s)	137, 170
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	1164
BanII	GRGCYC	1 cut(s)	622
Bbv12I	GWGCWC	1 cut(s)	314
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	9 cut(s)	78, 125, 209, 212, 218, 246, 249, 397, 966
BccI	CCATC	4 cut(s)	128, 530, 998, 1090
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	2 cut(s)	509, 1173
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	4 cut(s)	107, 131, 408, 1137
BlnI	CCTAGG	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	509, 1173
Bme18I	GGWCC	1 cut(s)	769
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	1186
BmgT120I	GGNCC	3 cut(s)	618, 619, 769
BmiI	GGNNCC	6 cut(s)	565, 620, 621, 770, 1107, 1166
BmrFI	CCNGG	2 cut(s)	509, 1173
BmrI	ACTGGG	2 cut(s)	625, 647
BmsI	GCATC	2 cut(s)	233, 1087
BmuI	ACTGGG	2 cut(s)	625, 647
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	407, 1171
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 828, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 628
Bse1I	ACTGG	7 cut(s)	189, 280, 380, 620, 653, 722, 1166
Bse3DI	GCAATG	3 cut(s)	81, 623, 1106
BseBI	CCWGG	2 cut(s)	509, 1173
BseDI	CCNNGG	2 cut(s)	407, 1171
BseGI	GGATG	3 cut(s)	823, 1033, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	210, 628
BseMI	GCAATG	3 cut(s)	81, 623, 1106
BseMII	CTCAG	4 cut(s)	431, 531, 930, 1071
BseNI	ACTGG	7 cut(s)	189, 280, 380, 620, 653, 722, 1166
BseRI	GAGGAG	1 cut(s)	956
BseSI	GKGCMC	2 cut(s)	314, 622
BseXI	GCAGC	9 cut(s)	78, 125, 209, 212, 218, 246, 249, 397, 966
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	2 cut(s)	566, 710
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	14, 584, 620
BshNI	GGYRCC	1 cut(s)	1164
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	2 cut(s)	482, 782
BslI	CCNNNNNNNGG	2 cut(s)	210, 628
BsmFI	GGGAC	2 cut(s)	482, 782
BsmI	GAATGC	2 cut(s)	73, 1000
BsnI	GGCC	3 cut(s)	14, 584, 620
Bsp120I	GGGCCC	1 cut(s)	618
Bsp1286I	GDGCHC	2 cut(s)	314, 622
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	673, 962, 967
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	3 cut(s)	14, 584, 620
BspCNI	CTCAG	4 cut(s)	432, 530, 931, 1070
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	6 cut(s)	565, 620, 621, 770, 1107, 1166
BspPI	GGATC	2 cut(s)	962, 970
BspT107I	GGYRCC	1 cut(s)	1164
BsrDI	GCAATG	3 cut(s)	81, 623, 1106
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	7 cut(s)	189, 280, 380, 620, 653, 722, 1166
BssECI	CCNNGG	2 cut(s)	407, 1171
BssMI	GATC	3 cut(s)	673, 962, 967
BssNI	GRCGYC	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	509, 1173
Bst4CI	ACNGT	4 cut(s)	103, 150, 309, 604
BstACI	GRCGYC	1 cut(s)	726
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	71, 693
BstDEI	CTNAG	4 cut(s)	440, 517, 939, 1057
BstF5I	GGATG	3 cut(s)	823, 1033, 1078
BstFNI	CGCG	1 cut(s)	419
BstKTI	GATC	3 cut(s)	676, 965, 970
BstMBI	GATC	3 cut(s)	673, 962, 967
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 206, 243, 436, 1105
BstNI	CCWGG	2 cut(s)	509, 1173
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	2 cut(s)	507, 1171
BstSLI	GKGCMC	2 cut(s)	314, 622
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	9 cut(s)	78, 125, 209, 212, 218, 246, 249, 397, 966
BstX2I	RGATCY	1 cut(s)	967
BstYI	RGATCY	1 cut(s)	967
BsuRI	GGCC	3 cut(s)	14, 584, 620
BtrI	CACGTC	1 cut(s)	1186
BtsCI	GGATG	3 cut(s)	823, 1033, 1078
BtsI	GCAGTG	1 cut(s)	883
BtsIMutI	CAGTG	8 cut(s)	182, 314, 585, 660, 715, 883, 936, 1159
Cac8I	GCNNGC	2 cut(s)	71, 693
Cfr13I	GGNCC	3 cut(s)	618, 619, 769
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	3 cut(s)	104, 295, 794
CviAII	CATG	2 cut(s)	51, 707
CviQI	GTAC	3 cut(s)	104, 295, 794
DdeI	CTNAG	4 cut(s)	440, 517, 939, 1057
DpnI	GATC	3 cut(s)	675, 964, 969
DpnII	GATC	3 cut(s)	673, 962, 967
DriI	GACNNNNNGTC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	12
Eam1105I	GACNNNNNGTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	769
Eco57I	CTGAAG	2 cut(s)	903, 1137
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	507, 1171
EcoT14I	CCWWGG	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	2 cut(s)	54, 710
FaqI	GGGAC	2 cut(s)	482, 782
FatI	CATG	2 cut(s)	50, 706
FokI	GGATG	3 cut(s)	810, 1040, 1065
FriOI	GRGCYC	1 cut(s)	622
FspBI	CTAG	4 cut(s)	107, 131, 408, 1137
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	3 cut(s)	14, 584, 620
HgaI	GACGC	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	2 cut(s)	54, 710
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	5 cut(s)	4, 470, 515, 635, 1198
HphI	GGTGA	2 cut(s)	383, 917
Hpy166II	GTNNAC	4 cut(s)	140, 312, 514, 658
Hpy188I	TCNGA	8 cut(s)	62, 325, 372, 646, 678, 967, 1060, 1113
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	4 cut(s)	140, 312, 514, 658
HpyAV	CCTTC	2 cut(s)	759, 1067
HpyCH4III	ACNGT	4 cut(s)	103, 150, 309, 604
HpyCH4IV	ACGT	1 cut(s)	1185
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 206, 243, 436, 1105
HpyF3I	CTNAG	4 cut(s)	440, 517, 939, 1057
HpySE526I	ACGT	1 cut(s)	1185
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	2 cut(s)	54, 710
Kzo9I	GATC	3 cut(s)	673, 962, 967
LmnI	GCTCC	2 cut(s)	569, 1105
Lsp1109I	GCAGC	9 cut(s)	78, 125, 209, 212, 218, 246, 249, 397, 966
LweI	GCATC	2 cut(s)	233, 1087
MaeI	CTAG	4 cut(s)	107, 131, 408, 1137
MaeII	ACGT	1 cut(s)	1185
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	3 cut(s)	675, 964, 969
MboI	GATC	3 cut(s)	673, 962, 967
MboII	GAAGA	3 cut(s)	568, 896, 1130
MfeI	CAATTG	2 cut(s)	329, 696
MflI	RGATCY	1 cut(s)	967
MhlI	GDGCHC	2 cut(s)	314, 622
MlsI	TGGCCA	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	3 cut(s)	464, 509, 644
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	810
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	116, 209
MspR9I	CCNGG	2 cut(s)	509, 1173
MunI	CAATTG	2 cut(s)	329, 696
Mva1269I	GAATGC	2 cut(s)	73, 1000
MvaI	CCWGG	2 cut(s)	509, 1173
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	5 cut(s)	203, 206, 243, 436, 1105
NdeII	GATC	3 cut(s)	673, 962, 967
NlaIII	CATG	2 cut(s)	54, 710
NlaIV	GGNNCC	6 cut(s)	565, 620, 621, 770, 1107, 1166
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	710
PctI	GAATGC	2 cut(s)	73, 1000
PfeI	GAWTC	2 cut(s)	4, 1198
PleI	GAGTC	3 cut(s)	464, 509, 643
PpsI	GAGTC	3 cut(s)	464, 509, 643
Psp6I	CCWGG	2 cut(s)	507, 1171
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	2 cut(s)	507, 1171
PspN4I	GGNNCC	6 cut(s)	565, 620, 621, 770, 1107, 1166
PspOMI	GGGCCC	1 cut(s)	618
PspPI	GGNCC	3 cut(s)	618, 619, 769
PsuI	RGATCY	1 cut(s)	967
PvuII	CAGCTG	2 cut(s)	116, 209
RsaI	GTAC	3 cut(s)	105, 296, 795
RsaNI	GTAC	3 cut(s)	104, 295, 794
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	810
Sau3AI	GATC	3 cut(s)	673, 962, 967
Sau96I	GGNCC	3 cut(s)	618, 619, 769
SchI	GAGTC	3 cut(s)	464, 509, 644
ScrFI	CCNGG	2 cut(s)	509, 1173
SduI	GDGCHC	2 cut(s)	314, 622
SfaNI	GCATC	2 cut(s)	233, 1087
SinI	GGWCC	1 cut(s)	769
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	4 cut(s)	107, 131, 408, 1137
StyD4I	CCNGG	2 cut(s)	507, 1171
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	4 cut(s)	103, 150, 309, 604
TaiI	ACGT	1 cut(s)	1188
TaqI	TCGA	1 cut(s)	273
TatI	WGTACW	2 cut(s)	103, 294
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	4, 1198
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	8 cut(s)	189, 314, 592, 660, 722, 883, 943, 1166
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	9 cut(s)	66, 113, 197, 200, 206, 234, 237, 385, 979
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	4 cut(s)	17, 738, 791, 936
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	8 cut(s)	189, 314, 592, 660, 722, 883, 943, 1166
VneI	GTGCAC	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	1 cut(s)	710
XmaJI	CCTAGG	1 cut(s)	407
XspI	CTAG	4 cut(s)	107, 131, 408, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.