FvH4_6g10730

Protein trichome birefringence-like 34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011993
Physical Location & Seq
Reverse (-)
6441758 .. 6444513
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10730.t3

Sequence Viewer

Length: 1245 bp
ATGAATCATCAAATACCTAAGCACACGCATCAAATAGTTCCTAATCCAAAACCTTGGGGATCAATCAGAAGCAGCTTGCATTCCCTCATTGCATTTCTTGTGGCAACTCTTCTCGTTGGCACTGTTTATCTTACCCAAGAATATGCTGTACAATTCTTAGAGGATAGTACTAGTTCTACCGTAGTGGGAACTTCTGGAGATAGCTGCAATATGTTTTCAGGGAAATGGGTATTTGATAACCAGTCTTATCCTCTATACAAGGGATTACAGTGTACTTATATGTCTGACCAATTGGCTTGTGAGAAGTTTGGGAGAAAAGACTTGAGCTTCCAGAATTGGAGATGGCAACCCCATCAATGTGACCTCCCTAGGTTCAATGCCACAGCGTTGCTTGAGAGGCTGAGGAACAAGAGGCTTGTGTATGTTGGGGATTCCTTGAATCGAAATCAATGGGTTTCCATGGTTTGCCTGATCGAGTCAGCTGTTCCTGCAGAGCACAAGTCCATGCACACCAATGGCTCCTTGACCACCTTCAAAGCAACTGAATACAATGCCACAATTGAGTTCTACTGGGCTCCATTGCTAGTGGAATCAAACTCAGATCACCCAGTGAATCACCGGATACCGGAACGGATTGTTAGGGTTCAGGCAATTGAAAATCATGCCAGGCATTGGAGTGATGCAGACTTTCTTGTTTTCAATTCTTATCTTTGGTGGAGAAGGTCCATGATGAGTGTCTTGTGGGGATCGTTTGAAAGCTCTAATGGAATTTACAAAGACGTTAAGATGCCTAGAGTGTATGAGATGGCTCTAAAGACTTGGTCGGATTGGTTGGAGGTCCATGTTAATCCAAACAAGACCAAATTGTTCTTCGTAAGCATGTCACCTACTCACCAAAGTGCTGAAGAATGGGGTGAAACTAATGGCGAGAATTGCTATGGAGAAACTGAGCAGATTAAGGTGGAGGGCTACTGGGGAAATAGTTCGGATCTGAAAATTATGCGTGTAGTCGAGAATGTACTTGGGGAGCTGAAAACAAGAGGTTTGGATGTGCAAATGCTCAATATCACACAACTCTCACAGTATAGAAAAGAAGGTCATCCATCAATTTATAGGAAGCAGTGGGATGTTCTAACAGAAGAGCAATTAGCAAACCCTAGCAGTTTTGCAGATTGTATACATTGGTGCCTCCCTGGAGTGCCAGACGTTTGGAATGAGCTCCTCTATGCTTACATTTTCCAATGA

Protein Analysis

415

Amino Acids

48.0

Weight (kDa)

6.21

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 1 - 257 8.4e-74 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38320 AT2G38320
fragaria_vesca FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica MD12G1179000.v1.1
prunus_persica Prupe.6G284100_v2.0.a1
pyrus_communis pycom12g16890
rosa_chinensis RchiOBHm_Chr3g0461761
rosa_laevigata RLG00000024902
rosa_multiflora Rmu_sc0004308.1_g000002
rosa_roxburghii Rroxscaffold_6G00417980
rosa_rugosa Rorug03G0053300 Rorug03G0053400
rosa_samantha Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana Rw3G009440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1185
AccB7I CCANNNNNTGG 1 cut(s) 672
AccI GTMKAC 1 cut(s) 1177
AclWI GGATC 3 cut(s) 67, 754, 996
AcsI RAATTY 1 cut(s) 768
AcuI CTGAAG 1 cut(s) 924
AdeI CACNNNGTG 1 cut(s) 610
AfaI GTAC 4 cut(s) 150, 169, 274, 1020
AfiI CCNNNNNNNGG 2 cut(s) 625, 672
AgsI TTSAA 6 cut(s) 376, 439, 535, 656, 700, 755
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 2 cut(s) 665, 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 854, 886
AleI CACNNNNGTG 1 cut(s) 897
AluBI AGCT 7 cut(s) 75, 204, 327, 482, 759, 1030, 1219
AluI AGCT 7 cut(s) 75, 204, 327, 482, 759, 1030, 1219
Alw21I GWGCWC 2 cut(s) 498, 1221
AlwI GGATC 3 cut(s) 67, 754, 996
ApeKI GCWGC 2 cut(s) 72, 204
ApoI RAATTY 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 982
AspA2I CCTAGG 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 723, 838
AsuHPI GGTGA 5 cut(s) 596, 608, 876, 884, 926
AvaII GGWCC 2 cut(s) 723, 838
AvrII CCTAGG 1 cut(s) 368
BanI GGYRCC 1 cut(s) 1185
BanII GRGCYC 2 cut(s) 577, 1221
Bbv12I GWGCWC 2 cut(s) 498, 1221
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 84, 191
BccI CCATC 4 cut(s) 336, 360, 799, 1111
BciT130I CCWGG 2 cut(s) 667, 1194
BciVI GTATCC 1 cut(s) 615
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 5 cut(s) 171, 369, 584, 792, 1158
BfmI CTRYAG 1 cut(s) 489
BfuI GTATCC 1 cut(s) 615
BisI GCNGC 2 cut(s) 73, 205
BlnI CCTAGG 1 cut(s) 368
BlsI GCNGC 2 cut(s) 74, 206
BmcAI AGTACT 1 cut(s) 169
Bme1390I CCNGG 2 cut(s) 667, 1194
Bme18I GGWCC 2 cut(s) 723, 838
BmgT120I GGNCC 2 cut(s) 723, 838
BmiI GGNNCC 3 cut(s) 520, 576, 1187
BmrFI CCNGG 2 cut(s) 667, 1194
BmrI ACTGGG 3 cut(s) 580, 602, 982
BmsI GCATC 3 cut(s) 37, 670, 777
BmuI ACTGGG 3 cut(s) 580, 602, 982
BpmI CTGGAG 2 cut(s) 216, 1215
Bpu10I CCTNAGC 2 cut(s) 18, 401
BpuEI CTTGAG 2 cut(s) 343, 413
BsaJI CCNNGG 4 cut(s) 53, 368, 459, 1192
BsaWI WCCGGW 2 cut(s) 618, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 672
Bse1I ACTGG 4 cut(s) 241, 575, 608, 977
Bse3DI GCAATG 2 cut(s) 87, 578
BseBI CCWGG 2 cut(s) 667, 1194
BseDI CCNNGG 4 cut(s) 53, 368, 459, 1192
BseGI GGATG 3 cut(s) 1054, 1099, 1132
BseLI CCNNNNNNNGG 2 cut(s) 625, 672
BseMI GCAATG 2 cut(s) 87, 578
BseMII CTCAG 3 cut(s) 392, 612, 939
BseNI ACTGG 4 cut(s) 241, 575, 608, 977
BseRI GAGGAG 1 cut(s) 1211
BseXI GCAGC 2 cut(s) 84, 191
BshNI GGYRCC 1 cut(s) 1185
BsiHKAI GWGCWC 2 cut(s) 498, 1221
BsiSI CCGG 2 cut(s) 619, 626
BslI CCNNNNNNNGG 2 cut(s) 625, 672
BsmI GAATGC 1 cut(s) 79
Bsp1286I GDGCHC 3 cut(s) 498, 577, 1221
Bsp1407I TGTACA 1 cut(s) 148
Bsp143I GATC 5 cut(s) 59, 471, 601, 746, 988
Bsp19I CCATGG 1 cut(s) 459
BspCNI CTCAG 3 cut(s) 393, 611, 940
BspLI GGNNCC 3 cut(s) 520, 576, 1187
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 3 cut(s) 67, 754, 996
BspQI GCTCTTC 1 cut(s) 1134
BspT107I GGYRCC 1 cut(s) 1185
BsrDI GCAATG 2 cut(s) 87, 578
BsrGI TGTACA 1 cut(s) 148
BsrI ACTGG 4 cut(s) 241, 575, 608, 977
BssECI CCNNGG 4 cut(s) 53, 368, 459, 1192
BssMI GATC 5 cut(s) 59, 471, 601, 746, 988
BssNAI GTATAC 1 cut(s) 1178
BssT1I CCWWGG 3 cut(s) 53, 368, 459
Bst1107I GTATAC 1 cut(s) 1178
Bst2UI CCWGG 2 cut(s) 667, 1194
Bst4CI ACNGT 4 cut(s) 124, 181, 270, 1083
Bst6I CTCTTC 2 cut(s) 114, 1134
BstAUI TGTACA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 5 cut(s) 18, 157, 401, 598, 948
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 1054, 1099, 1132
BstKTI GATC 5 cut(s) 62, 474, 604, 749, 991
BstMBI GATC 5 cut(s) 59, 471, 601, 746, 988
BstMWI GCNNNNNNNGC 3 cut(s) 397, 488, 933
BstNI CCWGG 2 cut(s) 667, 1194
BstNSI RCATGY 1 cut(s) 883
BstSCI CCNGG 2 cut(s) 665, 1192
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 84, 191
BstX2I RGATCY 1 cut(s) 988
BstXI CCANNNNNNTGG 2 cut(s) 54, 1209
BstYI RGATCY 1 cut(s) 988
BstZ17I GTATAC 1 cut(s) 1178
BsuI GTATCC 1 cut(s) 615
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 1054, 1099, 1132
BtsI GCAGTG 1 cut(s) 1127
BtsIMutI CAGTG 4 cut(s) 120, 275, 615, 1127
Cac8I GCNNGC 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 723, 838
Csp6I GTAC 4 cut(s) 149, 168, 273, 1019
CviAII CATG 6 cut(s) 460, 505, 662, 727, 842, 880
CviQI GTAC 4 cut(s) 149, 168, 273, 1019
DdeI CTNAG 5 cut(s) 18, 157, 401, 598, 948
DpnI GATC 5 cut(s) 61, 473, 603, 748, 990
DpnII GATC 5 cut(s) 59, 471, 601, 746, 988
DraIII CACNNNGTG 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 114, 1134
EarI CTCTTC 2 cut(s) 114, 1134
Ecl136II GAGCTC 1 cut(s) 1219
Eco130I CCWWGG 3 cut(s) 53, 368, 459
Eco24I GRGCYC 2 cut(s) 577, 1221
Eco47I GGWCC 2 cut(s) 723, 838
Eco53kI GAGCTC 1 cut(s) 1219
Eco57I CTGAAG 1 cut(s) 924
EcoICRI GAGCTC 1 cut(s) 1219
EcoRII CCWGG 2 cut(s) 665, 1192
EcoT14I CCWWGG 3 cut(s) 53, 368, 459
EcoT38I GRGCYC 2 cut(s) 577, 1221
ErhI CCWWGG 3 cut(s) 53, 368, 459
FaeI CATG 6 cut(s) 463, 508, 665, 730, 845, 883
FatI CATG 6 cut(s) 459, 504, 661, 726, 841, 879
FblI GTMKAC 1 cut(s) 1177
Fnu4HI GCNGC 2 cut(s) 73, 205
FokI GGATG 3 cut(s) 1061, 1086, 1139
FriOI GRGCYC 2 cut(s) 577, 1221
Fsp4HI GCNGC 2 cut(s) 73, 205
FspBI CTAG 5 cut(s) 171, 369, 584, 792, 1158
GluI GCNGC 2 cut(s) 73, 205
GsuI CTGGAG 2 cut(s) 216, 1215
HapII CCGG 2 cut(s) 619, 626
Hin1II CATG 6 cut(s) 463, 508, 665, 730, 845, 883
HinfI GANTC 6 cut(s) 4, 431, 439, 476, 590, 613
HpaII CCGG 2 cut(s) 619, 626
HphI GGTGA 5 cut(s) 596, 608, 876, 884, 926
Hpy166II GTNNAC 2 cut(s) 273, 1178
Hpy188I TCNGA 6 cut(s) 68, 286, 601, 826, 988, 993
Hpy188III TCNNGA 3 cut(s) 195, 331, 1012
Hpy8I GTNNAC 2 cut(s) 273, 1178
HpyAV CCTTC 3 cut(s) 541, 714, 1088
HpyCH4III ACNGT 4 cut(s) 124, 181, 270, 1083
HpyCH4IV ACGT 2 cut(s) 780, 1206
HpyCH4V TGCA 8 cut(s) 79, 92, 207, 491, 508, 683, 1054, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 397, 488, 933
HpyF3I CTNAG 5 cut(s) 18, 157, 401, 598, 948
HpySE526I ACGT 2 cut(s) 780, 1206
Hsp92II CATG 6 cut(s) 463, 508, 665, 730, 845, 883
Kzo9I GATC 5 cut(s) 59, 471, 601, 746, 988
LguI GCTCTTC 1 cut(s) 1134
LmnI GCTCC 4 cut(s) 524, 580, 1027, 1224
Lsp1109I GCAGC 2 cut(s) 84, 191
LweI GCATC 3 cut(s) 37, 670, 777
MaeI CTAG 5 cut(s) 171, 369, 584, 792, 1158
MaeII ACGT 2 cut(s) 780, 1206
MaeIII GTNAC 2 cut(s) 359, 882
MalI GATC 5 cut(s) 61, 473, 603, 748, 990
MboI GATC 5 cut(s) 59, 471, 601, 746, 988
MboII GAAGA 4 cut(s) 101, 862, 917, 1151
MfeI CAATTG 3 cut(s) 290, 558, 651
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 3 cut(s) 498, 577, 1221
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 804, 813
MroXI GAANNNNTTC 1 cut(s) 982
MseI TTAA 3 cut(s) 783, 846, 957
MslI CAYNNNNRTG 4 cut(s) 357, 513, 675, 897
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 2 cut(s) 619, 626
MspR9I CCNGG 2 cut(s) 667, 1194
MunI CAATTG 3 cut(s) 290, 558, 651
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 2 cut(s) 667, 1194
MwoI GCNNNNNNNGC 3 cut(s) 397, 488, 933
NcoI CCATGG 1 cut(s) 459
NdeII GATC 5 cut(s) 59, 471, 601, 746, 988
NlaIII CATG 6 cut(s) 463, 508, 665, 730, 845, 883
NlaIV GGNNCC 3 cut(s) 520, 576, 1187
NmuCI GTSAC 2 cut(s) 359, 882
NspI RCATGY 1 cut(s) 883
OliI CACNNNNGTG 1 cut(s) 897
PciSI GCTCTTC 1 cut(s) 1134
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 982
PfeI GAWTC 5 cut(s) 4, 431, 439, 590, 613
PflFI GACNNNGTC 1 cut(s) 820
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 2 cut(s) 74, 206
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 1221
Psp6I CCWGG 2 cut(s) 665, 1192
PspGI CCWGG 2 cut(s) 665, 1192
PspN4I GGNNCC 3 cut(s) 520, 576, 1187
PspPI GGNCC 2 cut(s) 723, 838
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 1 cut(s) 988
PsyI GACNNNGTC 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 4 cut(s) 150, 169, 274, 1020
RsaNI GTAC 4 cut(s) 149, 168, 273, 1019
RseI CAYNNNNRTG 4 cut(s) 357, 513, 675, 897
SacI GAGCTC 1 cut(s) 1221
SapI GCTCTTC 1 cut(s) 1134
SaqAI TTAA 3 cut(s) 783, 846, 957
SatI GCNGC 2 cut(s) 73, 205
Sau3AI GATC 5 cut(s) 59, 471, 601, 746, 988
Sau96I GGNCC 2 cut(s) 723, 838
ScaI AGTACT 1 cut(s) 169
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 667, 1194
SduI GDGCHC 3 cut(s) 498, 577, 1221
SfaNI GCATC 3 cut(s) 37, 670, 777
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 2 cut(s) 723, 838
SmiMI CAYNNNNRTG 4 cut(s) 357, 513, 675, 897
SmlI CTYRAG 2 cut(s) 322, 392
SmoI CTYRAG 2 cut(s) 322, 392
SpeI ACTAGT 1 cut(s) 170
SspMI CTAG 5 cut(s) 171, 369, 584, 792, 1158
SstI GAGCTC 1 cut(s) 1221
StyD4I CCNGG 2 cut(s) 665, 1192
StyI CCWWGG 3 cut(s) 53, 368, 459
TaaI ACNGT 4 cut(s) 124, 181, 270, 1083
TaiI ACGT 2 cut(s) 783, 1209
TaqI TCGA 3 cut(s) 442, 474, 1011
TatI WGTACW 4 cut(s) 148, 167, 272, 1018
TfiI GAWTC 5 cut(s) 4, 431, 439, 590, 613
Tru1I TTAA 3 cut(s) 783, 846, 957
Tru9I TTAA 3 cut(s) 783, 846, 957
TscAI CASTG 4 cut(s) 127, 275, 615, 1127
TseFI GTSAC 2 cut(s) 359, 882
TseI GCWGC 2 cut(s) 72, 204
Tsp45I GTSAC 2 cut(s) 359, 882
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 4 cut(s) 127, 275, 615, 1127
Tth111I GACNNNGTC 1 cut(s) 820
Van91I CCANNNNNTGG 1 cut(s) 672
VpaK11BI GGWCC 2 cut(s) 723, 838
XapI RAATTY 1 cut(s) 768
XceI RCATGY 1 cut(s) 883
XmaJI CCTAGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 1177
XmnI GAANNNNTTC 1 cut(s) 982
XspI CTAG 5 cut(s) 171, 369, 584, 792, 1158
ZrmI AGTACT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.