Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Reverse (-)

9424733 .. 9425657

Gene Structure 925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG116800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAATCACCGGTTACCGGAACGGATTGTTAGGGTTCAGGCAATTGAAAAGCATGCTAGACATTGGACTGATGCAGACTTTCTTGTTTTCAATTCCTATCTTTGGTGGAGAAGGTCCATGATGAGTGTCTTGTGGGGATCTTTTGAAAGCTCTGATGGAATTTACAGAGAGGTTGGGATGCCTAGAGTGTATGAAATGGCTCTAAAGACTTGGTCGGATTGGTTGGAGGTCCATGTTAATCCAAACAAGACCAAGTTGTTCTTTGTTAGCATGTCACCTACTCACCAAAGCGCTGAAGAATGGGGTGTGACTACTGGCGAGAATTGCTACGGAGAAACTGAACCGATTAAGGAGGAGGGCTACAAGGGAAATGCATCGGATCCAAAAATGATGCGTGTTGTTGAGAATGTACTTGGGGAGCTGAAAACAAGAGGTTTGGATGTGCAAATACTCAATATAACGCAACTCTCAGAGTACAGAAAAGAAGGTCATCCATCAATTTATAGGAAGCAGTGGGATGCTCTAACAGAAAAGCAATTAGCAAAACCTAGCAGTTTTGCAGATTGTATACATTGGTGCCTCCCTGGAGTGCCAGACGTTTGGAATGAGCTCCTCTATGCTTACATTTTTCAAATGACAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

214

Amino Acids

25.02

Weight (kDa)

5.99

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	6 - 207	3.7e-60	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	576
AccI	GTMKAC	1 cut(s)	568
AclWI	GGATC	3 cut(s)	145, 374, 387
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	411, 476
AfeI	AGCGCT	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	16, 102
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	4 cut(s)	47, 91, 146, 632
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	3 cut(s)	150, 421, 610
AluI	AGCT	3 cut(s)	150, 421, 610
Alw21I	GWGCWC	1 cut(s)	612
AlwI	GGATC	3 cut(s)	145, 374, 387
Aor51HI	AGCGCT	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	159
AsiGI	ACCGGT	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	114, 229
AsuHPI	GGTGA	2 cut(s)	267, 275
AvaII	GGWCC	2 cut(s)	114, 229
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	612
BccI	CCATC	2 cut(s)	149, 502
BciT130I	CCWGG	1 cut(s)	585
BfaI	CTAG	3 cut(s)	57, 183, 549
BfoI	RGCGCY	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	2 cut(s)	114, 229
BmgT120I	GGNCC	2 cut(s)	114, 229
BmiI	GGNNCC	2 cut(s)	381, 578
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	5 cut(s)	61, 168, 381, 383, 508
BpmI	CTGGAG	1 cut(s)	606
BsaJI	CCNNGG	1 cut(s)	583
BsaWI	WCCGGW	2 cut(s)	9, 16
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 102
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	4 cut(s)	183, 445, 490, 523
BseLI	CCNNNNNNNGG	2 cut(s)	16, 102
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	2 cut(s)	368, 602
BshNI	GGYRCC	1 cut(s)	576
BshTI	ACCGGT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	10, 17
BslI	CCNNNNNNNGG	2 cut(s)	16, 102
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	2 cut(s)	137, 379
BspCNI	CTCAG	1 cut(s)	482
BspLI	GGNNCC	2 cut(s)	381, 578
BspPI	GGATC	3 cut(s)	145, 374, 387
BspT107I	GGYRCC	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	2 cut(s)	137, 379
BssNAI	GTATAC	1 cut(s)	569
Bst1107I	GTATAC	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	585
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	469
BstEII	GGTNACC	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	183, 445, 490, 523
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	2 cut(s)	140, 382
BstMBI	GATC	2 cut(s)	137, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	2 cut(s)	56, 274
BstPI	GGTNACC	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	583
BstX2I	RGATCY	2 cut(s)	137, 379
BstXI	CCANNNNNNTGG	1 cut(s)	600
BstYI	RGATCY	2 cut(s)	137, 379
BstZ17I	GTATAC	1 cut(s)	569
BtsCI	GGATG	4 cut(s)	183, 445, 490, 523
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	114, 229
Csp6I	GTAC	2 cut(s)	410, 475
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	4 cut(s)	53, 118, 233, 271
CviJI	RGCY	5 cut(s)	150, 200, 360, 421, 610
CviKI_1	RGCY	5 cut(s)	150, 200, 360, 421, 610
CviQI	GTAC	2 cut(s)	410, 475
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	2 cut(s)	139, 381
DpnII	GATC	2 cut(s)	137, 379
Ecl136II	GAGCTC	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	612
Eco47I	GGWCC	2 cut(s)	114, 229
Eco47III	AGCGCT	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	610
EcoO65I	GGTNACC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	612
FaeI	CATG	4 cut(s)	56, 121, 236, 274
FaiI	YATR	9 cut(s)	54, 119, 192, 234, 272, 458, 504, 569, 618
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	4 cut(s)	52, 117, 232, 270
FblI	GTMKAC	1 cut(s)	568
FokI	GGATG	4 cut(s)	190, 452, 477, 530
FriOI	GRGCYC	1 cut(s)	612
FspBI	CTAG	3 cut(s)	57, 183, 549
GlaI	GCGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	294
HapII	CCGG	2 cut(s)	10, 17
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	4 cut(s)	56, 121, 236, 274
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	10, 17
HphI	GGTGA	2 cut(s)	267, 275
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	4 cut(s)	154, 217, 379, 472
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	2 cut(s)	105, 479
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	4 cut(s)	74, 374, 445, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	1 cut(s)	469
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	4 cut(s)	56, 121, 236, 274
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	137, 379
LmnI	GCTCC	2 cut(s)	418, 615
LpnPI	CCDG	8 cut(s)	23, 23, 30, 300, 570, 597, 606, 624
LweI	GCATC	5 cut(s)	61, 168, 381, 383, 508
MaeI	CTAG	3 cut(s)	57, 183, 549
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	3 cut(s)	12, 273, 307
MalI	GATC	2 cut(s)	139, 381
MboI	GATC	2 cut(s)	137, 379
MboII	GAAGA	1 cut(s)	308
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	2 cut(s)	137, 379
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	6 cut(s)	42, 91, 159, 322, 498, 536
MmeI	TCCRAC	2 cut(s)	195, 204
MnlI	CCTC	7 cut(s)	163, 220, 346, 349, 425, 590, 623
Mph1103I	ATGCAT	1 cut(s)	376
MseI	TTAA	2 cut(s)	237, 348
MspI	CCGG	2 cut(s)	10, 17
MspR9I	CCNGG	1 cut(s)	585
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	2 cut(s)	137, 379
NlaIII	CATG	4 cut(s)	56, 121, 236, 274
NlaIV	GGNNCC	2 cut(s)	381, 578
NmuCI	GTSAC	2 cut(s)	273, 307
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	2 cut(s)	56, 274
PaeI	GCATGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	4
PflFI	GACNNNGTC	1 cut(s)	211
PinAI	ACCGGT	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	583
PspEI	GGTNACC	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	381, 578
PspPI	GGNCC	2 cut(s)	114, 229
PsuI	RGATCY	2 cut(s)	137, 379
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	411, 476
RsaNI	GTAC	2 cut(s)	410, 475
SacI	GAGCTC	1 cut(s)	612
SaqAI	TTAA	2 cut(s)	237, 348
Sau3AI	GATC	2 cut(s)	137, 379
Sau96I	GGNCC	2 cut(s)	114, 229
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	5 cut(s)	61, 168, 381, 383, 508
SinI	GGWCC	2 cut(s)	114, 229
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	6 cut(s)	42, 91, 159, 322, 498, 536
SspMI	CTAG	3 cut(s)	57, 183, 549
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	583
TaiI	ACGT	1 cut(s)	600
TasI	AATT	6 cut(s)	42, 91, 159, 322, 498, 536
TatI	WGTACW	2 cut(s)	409, 474
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	237, 348
Tru9I	TTAA	2 cut(s)	237, 348
TscAI	CASTG	1 cut(s)	518
TseFI	GTSAC	2 cut(s)	273, 307
Tsp45I	GTSAC	2 cut(s)	273, 307
TspDTI	ATGAA	2 cut(s)	17, 207
TspGWI	ACGGA	2 cut(s)	37, 345
TspRI	CASTG	1 cut(s)	518
Tth111I	GACNNNGTC	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	114, 229
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	2 cut(s)	56, 274
XmiI	GTMKAC	1 cut(s)	568
XspI	CTAG	3 cut(s)	57, 183, 549
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.