Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Forward (+)

39537458 .. 39540726

Gene Structure 3269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGGGTGTGTTTTTACATGGCAGTTTTTGAGCTTTGTGGGATTGTTTGTTTTCGTGTTAAAACATATAAGCTTAGGTTCAATGCCACAGCGTTGCTTGAGAGGCTAAGGAACAAGAGGCTTGTGTATGTTGGGGATTCCTTGAATCGAAATCAATGGGTTTCCATGGTTTGCCTGATAGAGTCAGCTGTTCCTCCAGAGCTCAAGTCCATGCACACCAATGGCTCCTTGACCACCTTCAAAGCAACTGAATACAATGCCACAATTGAGTTCTATTGGGCTCCGTTGCTAGTGGAATCAAACTCAGATCACCCGATGAATCACCGGTTACCGGAACGGATTGTTAGGGTTCAGGCAATTGAAAAGCATGCTAGACATTGGACTGATGCAGACTTTCTTGTTTTCAATTCCTATCTTTGGTGGAGAAGGTCCATGATGAGTGTCTTGTGGGGATCTTTTGAAAGCTCTGATGGAATTTACAAAGAGGTTGGGATGCCTAGAGTGTATGAAATGGCTCTAAAGACTTGGTCGGATTGGTTGGAGGTCCATGTTAATCCAAACAAGACCAAGTTGTTCTTTGTTAGCATGTCACCTACTCACCAAAGCGCTGAAGAATGGGGTGTGACTAGGGGCGAGAATTGCTACGGAGAAACTGAACCAATTAAGGAGGAGGGCTACAAGGGAAATGCATCGGATCCAAAAATTATGCGTGTTGTCGAGAATGTACTTGGGGAGCTGAAAACAAGAGGTTTGGATGTGCAAATGCTCAATGTAACGCAACTCTCAGAGTATAGAAAAGAAGGCCATCCATCAATTTATAGGAAGCAGTGGGATGTTCTAACAGAAAAGCAATTAGCAAACCCTAGCAGTTTTGCAGATTGTATACATTGGTGCCTCCCTGGAGTGCCAGACGTTTGGAATGAGCTCCTCTATGCTTACATTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

316

Amino Acids

36.9

Weight (kDa)

6.76

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	26 - 312	4.7e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	891
AccI	GTMKAC	1 cut(s)	883
AclWI	GGATC	3 cut(s)	460, 689, 702
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	1 cut(s)	726
AfeI	AGCGCT	1 cut(s)	607
AfiI	CCNNNNNNNGG	2 cut(s)	331, 417
AgeI	ACCGGT	1 cut(s)	324
AgsI	TTSAA	7 cut(s)	82, 145, 241, 362, 406, 461, 947
AjnI	CCWGG	1 cut(s)	898
AluBI	AGCT	7 cut(s)	34, 73, 188, 202, 465, 736, 925
AluI	AGCT	7 cut(s)	34, 73, 188, 202, 465, 736, 925
Alw21I	GWGCWC	2 cut(s)	204, 927
AlwI	GGATC	3 cut(s)	460, 689, 702
Aor51HI	AGCGCT	1 cut(s)	607
AoxI	GGCC	1 cut(s)	802
ApoI	RAATTY	1 cut(s)	474
AsiGI	ACCGGT	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	2 cut(s)	429, 544
AsuHPI	GGTGA	4 cut(s)	302, 314, 582, 590
AvaII	GGWCC	2 cut(s)	429, 544
BamHI	GGATCC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	891
BanII	GRGCYC	3 cut(s)	204, 283, 927
Bbv12I	GWGCWC	2 cut(s)	204, 927
BccI	CCATC	3 cut(s)	464, 813, 817
BciT130I	CCWGG	1 cut(s)	900
BfaI	CTAG	5 cut(s)	290, 372, 498, 627, 864
BfoI	RGCGCY	1 cut(s)	609
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	2 cut(s)	429, 544
BmgT120I	GGNCC	2 cut(s)	429, 544
BmiI	GGNNCC	4 cut(s)	226, 282, 696, 893
BmrFI	CCNGG	1 cut(s)	900
BmsI	GCATC	3 cut(s)	376, 483, 698
BpmI	CTGGAG	2 cut(s)	180, 921
Bpu10I	CCTNAGC	2 cut(s)	74, 107
BpuEI	CTTGAG	2 cut(s)	119, 188
BsaJI	CCNNGG	2 cut(s)	165, 898
BsaWI	WCCGGW	2 cut(s)	324, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 417
Bse118I	RCCGGY	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	2 cut(s)	165, 898
BseGI	GGATG	4 cut(s)	498, 760, 805, 838
BseLI	CCNNNNNNNGG	2 cut(s)	331, 417
BseMII	CTCAG	2 cut(s)	318, 798
BseRI	GAGGAG	2 cut(s)	683, 917
BshFI	GGCC	1 cut(s)	804
BshNI	GGYRCC	1 cut(s)	891
BshTI	ACCGGT	1 cut(s)	324
BsiHKAI	GWGCWC	2 cut(s)	204, 927
BsiSI	CCGG	2 cut(s)	325, 332
BslI	CCNNNNNNNGG	2 cut(s)	331, 417
BsnI	GGCC	1 cut(s)	804
Bsp1286I	GDGCHC	3 cut(s)	204, 283, 927
Bsp143I	GATC	3 cut(s)	307, 452, 694
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	1 cut(s)	804
BspCNI	CTCAG	2 cut(s)	317, 797
BspLI	GGNNCC	4 cut(s)	226, 282, 696, 893
BspPI	GGATC	3 cut(s)	460, 689, 702
BspT107I	GGYRCC	1 cut(s)	891
BsrFI	RCCGGY	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	165, 898
BssMI	GATC	3 cut(s)	307, 452, 694
BssNAI	GTATAC	1 cut(s)	884
BssT1I	CCWWGG	1 cut(s)	165
Bst1107I	GTATAC	1 cut(s)	884
Bst2UI	CCWGG	1 cut(s)	900
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	4 cut(s)	74, 107, 304, 784
BstDSI	CCRYGG	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	327
BstF5I	GGATG	4 cut(s)	498, 760, 805, 838
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	3 cut(s)	310, 455, 697
BstMBI	GATC	3 cut(s)	307, 452, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 639
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	2 cut(s)	371, 589
BstPI	GGTNACC	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	898
BstX2I	RGATCY	2 cut(s)	452, 694
BstXI	CCANNNNNNTGG	1 cut(s)	915
BstYI	RGATCY	2 cut(s)	452, 694
BstZ17I	GTATAC	1 cut(s)	884
BsuRI	GGCC	1 cut(s)	804
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	498, 760, 805, 838
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	1 cut(s)	833
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	608
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	429, 544
Csp6I	GTAC	1 cut(s)	725
CspAI	ACCGGT	1 cut(s)	324
CviAII	CATG	7 cut(s)	19, 166, 211, 368, 433, 548, 586
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	4 cut(s)	74, 107, 304, 784
DpnI	GATC	3 cut(s)	309, 454, 696
DpnII	GATC	3 cut(s)	307, 452, 694
Ecl136II	GAGCTC	2 cut(s)	202, 925
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	3 cut(s)	204, 283, 927
Eco47I	GGWCC	2 cut(s)	429, 544
Eco47III	AGCGCT	1 cut(s)	607
Eco53kI	GAGCTC	2 cut(s)	202, 925
Eco57I	CTGAAG	1 cut(s)	630
Eco91I	GGTNACC	1 cut(s)	327
EcoICRI	GAGCTC	2 cut(s)	202, 925
EcoO65I	GGTNACC	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	691
EcoT38I	GRGCYC	3 cut(s)	204, 283, 927
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	7 cut(s)	22, 169, 214, 371, 436, 551, 589
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	7 cut(s)	18, 165, 210, 367, 432, 547, 585
FblI	GTMKAC	1 cut(s)	883
FokI	GGATG	4 cut(s)	505, 767, 792, 845
FriOI	GRGCYC	3 cut(s)	204, 283, 927
FspBI	CTAG	5 cut(s)	290, 372, 498, 627, 864
GlaI	GCGC	1 cut(s)	607
GsuI	CTGGAG	2 cut(s)	180, 921
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	804
HapII	CCGG	2 cut(s)	325, 332
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	7 cut(s)	22, 169, 214, 371, 436, 551, 589
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	5 cut(s)	137, 145, 182, 296, 319
HpaII	CCGG	2 cut(s)	325, 332
HphI	GGTGA	4 cut(s)	302, 314, 582, 590
Hpy166II	GTNNAC	1 cut(s)	884
Hpy188I	TCNGA	5 cut(s)	307, 469, 532, 694, 787
Hpy188III	TCNNGA	2 cut(s)	197, 718
Hpy8I	GTNNAC	1 cut(s)	884
HpyAV	CCTTC	3 cut(s)	247, 420, 794
HpyCH4IV	ACGT	1 cut(s)	912
HpyCH4V	TGCA	5 cut(s)	214, 389, 689, 760, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 639
HpyF3I	CTNAG	4 cut(s)	74, 107, 304, 784
HpySE526I	ACGT	1 cut(s)	912
Hsp92II	CATG	7 cut(s)	22, 169, 214, 371, 436, 551, 589
HspAI	GCGC	1 cut(s)	606
Kzo9I	GATC	3 cut(s)	307, 452, 694
LmnI	GCTCC	4 cut(s)	230, 286, 733, 930
LpnPI	CCDG	8 cut(s)	188, 210, 338, 338, 345, 885, 912, 921
LweI	GCATC	3 cut(s)	376, 483, 698
MaeI	CTAG	5 cut(s)	290, 372, 498, 627, 864
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	4 cut(s)	327, 588, 622, 772
MalI	GATC	3 cut(s)	309, 454, 696
MboI	GATC	3 cut(s)	307, 452, 694
MboII	GAAGA	1 cut(s)	623
MfeI	CAATTG	2 cut(s)	264, 357
MflI	RGATCY	2 cut(s)	452, 694
MhlI	GDGCHC	3 cut(s)	204, 283, 927
MluCI	AATT	9 cut(s)	264, 357, 406, 474, 637, 660, 702, 813, 851
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	2 cut(s)	510, 519
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	3 cut(s)	60, 552, 663
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	325, 332
MspR9I	CCNGG	1 cut(s)	900
MunI	CAATTG	2 cut(s)	264, 357
MvaI	CCWGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	2 cut(s)	103, 639
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	307, 452, 694
NlaIII	CATG	7 cut(s)	22, 169, 214, 371, 436, 551, 589
NlaIV	GGNNCC	4 cut(s)	226, 282, 696, 893
NmuCI	GTSAC	2 cut(s)	588, 622
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	2 cut(s)	371, 589
PaeI	GCATGC	1 cut(s)	371
PfeI	GAWTC	4 cut(s)	137, 145, 296, 319
PflFI	GACNNNGTC	1 cut(s)	526
PinAI	ACCGGT	1 cut(s)	324
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp124BI	GAGCTC	2 cut(s)	204, 927
Psp6I	CCWGG	1 cut(s)	898
PspEI	GGTNACC	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	4 cut(s)	226, 282, 696, 893
PspPI	GGNCC	2 cut(s)	429, 544
PsuI	RGATCY	2 cut(s)	452, 694
PsyI	GACNNNGTC	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	219
SacI	GAGCTC	2 cut(s)	204, 927
SaqAI	TTAA	3 cut(s)	60, 552, 663
Sau3AI	GATC	3 cut(s)	307, 452, 694
Sau96I	GGNCC	2 cut(s)	429, 544
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	3 cut(s)	204, 283, 927
SfaNI	GCATC	3 cut(s)	376, 483, 698
SinI	GGWCC	2 cut(s)	429, 544
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	98, 203
SmoI	CTYRAG	2 cut(s)	98, 203
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	9 cut(s)	264, 357, 406, 474, 637, 660, 702, 813, 851
SspMI	CTAG	5 cut(s)	290, 372, 498, 627, 864
SstI	GAGCTC	2 cut(s)	204, 927
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	915
TaqI	TCGA	2 cut(s)	148, 717
TasI	AATT	9 cut(s)	264, 357, 406, 474, 637, 660, 702, 813, 851
TatI	WGTACW	1 cut(s)	724
TfiI	GAWTC	4 cut(s)	137, 145, 296, 319
Tru1I	TTAA	3 cut(s)	60, 552, 663
Tru9I	TTAA	3 cut(s)	60, 552, 663
TscAI	CASTG	1 cut(s)	833
TseFI	GTSAC	2 cut(s)	588, 622
Tsp45I	GTSAC	2 cut(s)	588, 622
TspDTI	ATGAA	2 cut(s)	332, 522
TspGWI	ACGGA	3 cut(s)	273, 352, 660
TspRI	CASTG	1 cut(s)	833
Tth111I	GACNNNGTC	1 cut(s)	526
VpaK11BI	GGWCC	2 cut(s)	429, 544
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	2 cut(s)	371, 589
XmiI	GTMKAC	1 cut(s)	883
XspI	CTAG	5 cut(s)	290, 372, 498, 627, 864
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.