Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Forward (+)

26400899 .. 26403390

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGATTCAAATGCTGCCTAAAAAGCACCAATTACTTCCTACGACAACATGGGGAATCAGAAGCAGCTTGCATTCCCTCATTGCAATTCTTGTAGCAACTCTTCTAATTGGAGCTGTTTATCTGACCCAAGATGGTGGATTGCAGCTATTGTATCAGGATTGTACTATAATTACCACATTGGAAACTAGAGCAGCAGGGGCAGAAGACCCAAAATTGTCAATTAGCAGCAGCAAAAGCAGAAGCAGTAGCAAAAGCAAAAGCAGCTGCAATTTGTTTTCAGGGAAATGGGTTTCTGATAACCAGTCTTATCCTATGTATAAAGAGAGACAGTGCACTTATATGTCAGATCAATTGGCTTGTGAGAAGTTTGGGAGAAAAGACTTGAGCTATCAGAACTGGAGGTGGCAGCCCCACCAATGTGACCTCCCTAGGTTCAATGCCACAAAGTTGCTTGAGAGGCTAAGGAACAAGAGGCTTGTGTTTGTTGGGGACTCGTTGAATAGAGGTCAGTGGGTTTCCATGGTTTGCTTGGTCGAGTCTGCCATCAATCCAGACCTCAAATCCATGCCCACCAAAGCCAATGGCTCTTTGCTCATCTTCAAGGCCACTGAATACAATGCCACGATTGAGTTCTACTGGGCCCCATTGCTGGTGGAATCAAACTCTGATGATCCAGTGAACCACCGCGTACCAGATCGGATTGTAAGAGCGCAGGCAATTGAAAAACATGCAAGGCATTGGACTGATGCAGACGTTCTTGTTTTTAATTCATATCTCTGGTGGAGAAGGTCCCAAATGAACGTCTTGTGGGGATCTTTTGAAAGCCAAGATGGGATTTACAAGGATGTTGAGATGTTGAGGGTGTATGAGATGGCTCTCAGGACTTGGTCAGATTGGTTGGAGGTCCATGTTGATCGAACCAAGACCAAATTGTTTTTTGTTAGTATGTCACCTACTCACCAAAGTTCTAAAGAATGGGGCGAGTCAAGTAGGGAGAATTGCTACAAAGAAACACAGCCAATTACAGAGGAGGGATACTGGGGAAATGGATCAGATCCTAAAATGATGCGTCTGGTTGAGAATGTGCTTGATGGGTTGAAAGTAAGAGGTCTAGATGTACAAATCCTCAACATAACCCAACTCTCAGAGTACAGGAAAGAAGGGCATCCATCTATTTACAGGAAGCAATGGGAGCCTCTAACTGAAGAACAAGAATCAAATCCCAGCAGTTTTGCCGATTGTATACATTGGTGCCTCCCTGGAGTGCCTGATGTGTGGAATGAGCTCCTCTATGCTTACATTTTTCAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

438

Amino Acids

50.61

Weight (kDa)

6.8

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1251
AccI	GTMKAC	1 cut(s)	1243
AccII	CGCG	1 cut(s)	687
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	4 cut(s)	665, 820, 1049, 1057
AcuI	CTGAAG	1 cut(s)	1224
AfaI	GTAC	4 cut(s)	163, 690, 1119, 1151
AfiI	CCNNNNNNNGG	1 cut(s)	649
AgsI	TTSAA	8 cut(s)	8, 436, 499, 601, 722, 821, 1099, 1307
AjnI	CCWGG	1 cut(s)	1258
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	6 cut(s)	66, 113, 145, 264, 387, 1285
AluI	AGCT	6 cut(s)	66, 113, 145, 264, 387, 1285
Alw21I	GWGCWC	2 cut(s)	335, 1287
Alw26I	GTCTC	1 cut(s)	319
Alw44I	GTGCAC	1 cut(s)	331
AlwI	GGATC	4 cut(s)	665, 820, 1049, 1057
AoxI	GGCC	2 cut(s)	603, 639
ApaI	GGGCCC	1 cut(s)	643
ApaLI	GTGCAC	1 cut(s)	331
ApeKI	GCWGC	9 cut(s)	13, 63, 142, 191, 225, 228, 261, 264, 406
AspA2I	CCTAGG	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	4 cut(s)	639, 640, 789, 904
AsuHPI	GGTGA	2 cut(s)	942, 950
AvaII	GGWCC	2 cut(s)	789, 904
AvrII	CCTAGG	1 cut(s)	428
BaeGI	GKGCMC	2 cut(s)	335, 643
BanI	GGYRCC	1 cut(s)	1251
BanII	GRGCYC	2 cut(s)	643, 1287
BarI	GAAGNNNNNNTAC	2 cut(s)	84, 116
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	335, 1287
BbvI	GCAGC	8 cut(s)	75, 154, 203, 237, 240, 251, 273, 418
BccI	CCATC	6 cut(s)	125, 551, 824, 865, 1085, 1177
BciT130I	CCWGG	1 cut(s)	1260
BciVI	GTATCC	1 cut(s)	1028
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	3 cut(s)	186, 429, 1112
BfuI	GTATCC	1 cut(s)	1028
BisI	GCNGC	9 cut(s)	14, 64, 143, 192, 226, 229, 262, 265, 407
BlnI	CCTAGG	1 cut(s)	428
BlsI	GCNGC	9 cut(s)	15, 65, 144, 193, 227, 230, 263, 266, 408
Bme1390I	CCNGG	1 cut(s)	1260
Bme18I	GGWCC	2 cut(s)	789, 904
BmgT120I	GGNCC	4 cut(s)	639, 640, 789, 904
BmiI	GGNNCC	5 cut(s)	641, 642, 791, 1194, 1253
BmrFI	CCNGG	1 cut(s)	1260
BmrI	ACTGGG	2 cut(s)	646, 1048
BmsI	GCATC	3 cut(s)	736, 1056, 1174
BmuI	ACTGGG	2 cut(s)	646, 1048
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	418, 1281
Bpu10I	CCTNAGC	1 cut(s)	461
BpuEI	CTTGAG	2 cut(s)	403, 473
BsaJI	CCNNGG	3 cut(s)	428, 519, 1258
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse1I	ACTGG	5 cut(s)	301, 401, 641, 674, 1043
Bse3DI	GCAATG	3 cut(s)	78, 644, 1193
BseBI	CCWGG	1 cut(s)	1260
BseDI	CCNNGG	3 cut(s)	428, 519, 1258
BseGI	GGATG	2 cut(s)	850, 1165
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseMI	GCAATG	3 cut(s)	78, 644, 1193
BseMII	CTCAG	2 cut(s)	892, 1158
BseNI	ACTGG	5 cut(s)	301, 401, 641, 674, 1043
BseRI	GAGGAG	2 cut(s)	1043, 1277
BseSI	GKGCMC	2 cut(s)	335, 643
BseXI	GCAGC	8 cut(s)	75, 154, 203, 237, 240, 251, 273, 418
BseYI	CCCAGC	1 cut(s)	1223
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	2 cut(s)	605, 641
BshNI	GGYRCC	1 cut(s)	1251
BsiHKAI	GWGCWC	2 cut(s)	335, 1287
BslFI	GGGAC	2 cut(s)	503, 775
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	2 cut(s)	503, 775
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	605, 641
Bsp120I	GGGCCC	1 cut(s)	639
Bsp1286I	GDGCHC	3 cut(s)	335, 643, 1287
Bsp1407I	TGTACA	1 cut(s)	1117
Bsp143I	GATC	7 cut(s)	346, 670, 694, 812, 913, 1049, 1054
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	2 cut(s)	605, 641
BspCNI	CTCAG	2 cut(s)	891, 1157
BspFNI	CGCG	1 cut(s)	687
BspLI	GGNNCC	5 cut(s)	641, 642, 791, 1194, 1253
BspPI	GGATC	4 cut(s)	665, 820, 1049, 1057
BspT107I	GGYRCC	1 cut(s)	1251
BsrDI	GCAATG	3 cut(s)	78, 644, 1193
BsrGI	TGTACA	1 cut(s)	1117
BsrI	ACTGG	5 cut(s)	301, 401, 641, 674, 1043
BssECI	CCNNGG	3 cut(s)	428, 519, 1258
BssMI	GATC	7 cut(s)	346, 670, 694, 812, 913, 1049, 1054
BssNAI	GTATAC	1 cut(s)	1244
BssT1I	CCWWGG	2 cut(s)	428, 519
Bst1107I	GTATAC	1 cut(s)	1244
Bst2UI	CCWGG	1 cut(s)	1260
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	1117
BstC8I	GCNNGC	2 cut(s)	68, 714
BstDEI	CTNAG	3 cut(s)	461, 878, 1144
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	850, 1165
BstFNI	CGCG	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	7 cut(s)	349, 673, 697, 815, 916, 1052, 1057
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	7 cut(s)	346, 670, 694, 812, 913, 1049, 1054
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 197, 234, 261, 457, 1192
BstNI	CCWGG	1 cut(s)	1260
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	1258
BstSLI	GKGCMC	2 cut(s)	335, 643
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	8 cut(s)	75, 154, 203, 237, 240, 251, 273, 418
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	812, 1054
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	2 cut(s)	812, 1054
BstZ17I	GTATAC	1 cut(s)	1244
BsuI	GTATCC	1 cut(s)	1028
BsuRI	GGCC	2 cut(s)	605, 641
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	850, 1165
BtsIMutI	CAGTG	4 cut(s)	335, 515, 606, 681
Cac8I	GCNNGC	2 cut(s)	68, 714
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	4 cut(s)	639, 640, 789, 904
CseI	GACGC	1 cut(s)	1058
Csp6I	GTAC	4 cut(s)	162, 689, 1118, 1150
CviAII	CATG	5 cut(s)	48, 520, 565, 728, 908
CviQI	GTAC	4 cut(s)	162, 689, 1118, 1150
DdeI	CTNAG	3 cut(s)	461, 878, 1144
DpnI	GATC	7 cut(s)	348, 672, 696, 814, 915, 1051, 1056
DpnII	GATC	7 cut(s)	346, 670, 694, 812, 913, 1049, 1054
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	1285
Eco130I	CCWWGG	2 cut(s)	428, 519
Eco24I	GRGCYC	2 cut(s)	643, 1287
Eco47I	GGWCC	2 cut(s)	789, 904
Eco53kI	GAGCTC	1 cut(s)	1285
Eco57I	CTGAAG	1 cut(s)	1224
EcoICRI	GAGCTC	1 cut(s)	1285
EcoO109I	RGGNCCY	2 cut(s)	640, 789
EcoRII	CCWGG	1 cut(s)	1258
EcoT14I	CCWWGG	2 cut(s)	428, 519
EcoT38I	GRGCYC	2 cut(s)	643, 1287
ErhI	CCWWGG	2 cut(s)	428, 519
FaeI	CATG	5 cut(s)	51, 523, 568, 731, 911
FaqI	GGGAC	2 cut(s)	503, 775
FatI	CATG	5 cut(s)	47, 519, 564, 727, 907
FblI	GTMKAC	1 cut(s)	1243
Fnu4HI	GCNGC	9 cut(s)	14, 64, 143, 192, 226, 229, 262, 265, 407
FokI	GGATG	2 cut(s)	857, 1152
FriOI	GRGCYC	2 cut(s)	643, 1287
Fsp4HI	GCNGC	9 cut(s)	14, 64, 143, 192, 226, 229, 262, 265, 407
FspBI	CTAG	3 cut(s)	186, 429, 1112
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	9 cut(s)	14, 64, 143, 192, 226, 229, 262, 265, 407
GsaI	CCCAGC	1 cut(s)	1227
GsuI	CTGGAG	2 cut(s)	418, 1281
HaeIII	GGCC	2 cut(s)	605, 641
HgaI	GACGC	1 cut(s)	1058
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	5 cut(s)	51, 523, 568, 731, 911
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HinfI	GANTC	7 cut(s)	4, 54, 491, 536, 656, 983, 1214
HphI	GGTGA	2 cut(s)	942, 950
Hpy166II	GTNNAC	3 cut(s)	333, 679, 1244
Hpy188III	TCNNGA	4 cut(s)	155, 551, 880, 1112
Hpy8I	GTNNAC	3 cut(s)	333, 679, 1244
HpyAV	CCTTC	2 cut(s)	780, 1154
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	2 cut(s)	753, 801
HpyCH4V	TGCA	7 cut(s)	70, 83, 142, 267, 333, 731, 749
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 197, 234, 261, 457, 1192
HpyF3I	CTNAG	3 cut(s)	461, 878, 1144
HpySE526I	ACGT	2 cut(s)	753, 801
Hsp92II	CATG	5 cut(s)	51, 523, 568, 731, 911
HspAI	GCGC	1 cut(s)	710
Kzo9I	GATC	7 cut(s)	346, 670, 694, 812, 913, 1049, 1054
LmnI	GCTCC	3 cut(s)	110, 1192, 1290
Lsp1109I	GCAGC	8 cut(s)	75, 154, 203, 237, 240, 251, 273, 418
LweI	GCATC	3 cut(s)	736, 1056, 1174
MaeI	CTAG	3 cut(s)	186, 429, 1112
MaeII	ACGT	2 cut(s)	753, 801
MaeIII	GTNAC	2 cut(s)	419, 948
MalI	GATC	7 cut(s)	348, 672, 696, 814, 915, 1051, 1056
MboI	GATC	7 cut(s)	346, 670, 694, 812, 913, 1049, 1054
MboII	GAAGA	4 cut(s)	92, 215, 589, 1217
MfeI	CAATTG	2 cut(s)	350, 717
MflI	RGATCY	2 cut(s)	812, 1054
MhlI	GDGCHC	3 cut(s)	335, 643, 1287
MlyI	GAGTC	3 cut(s)	485, 545, 992
MmeI	TCCRAC	1 cut(s)	879
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	2 cut(s)	338, 417
MspA1I	CMGCKG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	1260
MunI	CAATTG	2 cut(s)	350, 717
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	1260
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	6 cut(s)	22, 197, 234, 261, 457, 1192
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	7 cut(s)	346, 670, 694, 812, 913, 1049, 1054
NlaIII	CATG	5 cut(s)	51, 523, 568, 731, 911
NlaIV	GGNNCC	5 cut(s)	641, 642, 791, 1194, 1253
NmuCI	GTSAC	2 cut(s)	419, 948
NspI	RCATGY	1 cut(s)	731
OliI	CACNNNNGTG	1 cut(s)	417
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	4, 54, 656, 1214
PflFI	GACNNNGTC	1 cut(s)	886
PkrI	GCNGC	9 cut(s)	15, 65, 144, 193, 227, 230, 263, 266, 408
PleI	GAGTC	3 cut(s)	485, 544, 991
PpsI	GAGTC	3 cut(s)	485, 544, 991
PpuMI	RGGWCCY	1 cut(s)	789
Psp124BI	GAGCTC	1 cut(s)	1287
Psp5II	RGGWCCY	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	1258
PspFI	CCCAGC	1 cut(s)	1223
PspGI	CCWGG	1 cut(s)	1258
PspN4I	GGNNCC	5 cut(s)	641, 642, 791, 1194, 1253
PspOMI	GGGCCC	1 cut(s)	639
PspPI	GGNCC	4 cut(s)	639, 640, 789, 904
PspPPI	RGGWCCY	1 cut(s)	789
PsuI	RGATCY	2 cut(s)	812, 1054
PsyI	GACNNNGTC	1 cut(s)	886
PvuII	CAGCTG	1 cut(s)	264
RsaI	GTAC	4 cut(s)	163, 690, 1119, 1151
RsaNI	GTAC	4 cut(s)	162, 689, 1118, 1150
RseI	CAYNNNNRTG	2 cut(s)	338, 417
SacI	GAGCTC	1 cut(s)	1287
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	9 cut(s)	14, 64, 143, 192, 226, 229, 262, 265, 407
Sau3AI	GATC	7 cut(s)	346, 670, 694, 812, 913, 1049, 1054
Sau96I	GGNCC	4 cut(s)	639, 640, 789, 904
SchI	GAGTC	3 cut(s)	485, 545, 992
ScrFI	CCNGG	1 cut(s)	1260
SduI	GDGCHC	3 cut(s)	335, 643, 1287
SfaNI	GCATC	3 cut(s)	736, 1056, 1174
SinI	GGWCC	2 cut(s)	789, 904
SmiMI	CAYNNNNRTG	2 cut(s)	338, 417
SmlI	CTYRAG	2 cut(s)	382, 452
SmoI	CTYRAG	2 cut(s)	382, 452
SsiI	CCGC	1 cut(s)	685
SspMI	CTAG	3 cut(s)	186, 429, 1112
SstI	GAGCTC	1 cut(s)	1287
StyD4I	CCNGG	1 cut(s)	1258
StyI	CCWWGG	2 cut(s)	428, 519
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	2 cut(s)	756, 804
TaqI	TCGA	2 cut(s)	534, 916
TatI	WGTACW	3 cut(s)	161, 1117, 1149
TfiI	GAWTC	4 cut(s)	4, 54, 656, 1214
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	4 cut(s)	335, 515, 613, 681
TseFI	GTSAC	2 cut(s)	419, 948
TseI	GCWGC	9 cut(s)	13, 63, 142, 191, 225, 228, 261, 264, 406
Tsp45I	GTSAC	2 cut(s)	419, 948
TspDTI	ATGAA	2 cut(s)	759, 812
TspRI	CASTG	4 cut(s)	335, 515, 613, 681
Tth111I	GACNNNGTC	1 cut(s)	886
VneI	GTGCAC	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	789, 904
XbaI	TCTAGA	1 cut(s)	1111
XceI	RCATGY	1 cut(s)	731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmaJI	CCTAGG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	1243
XspI	CTAG	3 cut(s)	186, 429, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.