RchiOBHm_Chr3g0461761

Protein trichome birefringence-like 34

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
9739342 .. 9742158
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42815

Sequence Viewer

Length: 1425 bp
ATGCCTAAGCATAAGCATCAAATAGTTCCTAATCCCAAACCTTGGGGTTCAATCAGAAGCAGCTTGCATTCCCTCATTGCAGTTCTTGTGGCAACTCTTCTCGTTGCAACTGTTTATCTTACCCAAGAATATGGTGTTCAGTTTTTAGAAGATTGTACTGCTTCTACTACAGTGAAAACTTCTGAGGATAGCTGCAATTTGTTTTCAGGGAAATGGGTATTTGATAACCAGTCTTATCCTTTATACAAGGGGTTACAGTGTACTTATATGTCTGACCAATTGGCCTGTGAGAAGTTTGGGAGAAAAGACTTAAGCTTCCAGAACTGGAGATGGCAACCCCATCAATGTGACCTCCCTAGGTCTCTTCCTGTCCCTTGCTCTCTCCTTTTGTTTTTGTTTGAGTTAATGCATTTTCAGTCCCTATTTAGGCTTCGCTCCGTTATGTCATTGTTTTTCATTTCTCTAACAGAATCTCTTTTATTATTTGACAAAATCAAGGTTCGACCTAAAATTTTAGCTAGCAACTTGAGACAAACTCTTAGGTTCAATGCCACAGCGTTGCTTGAGAGGCTAAGGAACAAGAGGCTTGTGTATGTTGGGGATTCCTTGAATCGAAATCAATGGGTTTCCATGGTTTGCCTGATAGAGTCAGCTGTTCCTCCAGAGCTCAAGTCCATGTACACCAATGGCTCCTTGACCACCTTCAAAGCAACTGAATACAATGCCACAATTGAGTTCTATTGGGCTCCATTGCTAGTGGAATCGAACTCAGATCACCCGATGAATCACCGGTTACCGGAACGGATTGTTAGGGTTCAGGCAATTGAAAAGCATGCTAGACATTGGACTGATGCAGACTTTCTTGTTTTCAATTCCTATCTTTGGTGGAGAAGGTCCATGATGAGTGTCTTGTGGGGATCTTTTGAAAGCTCTGATGGAATTTACAGAGAGGTTGGGATGCCTAGAGTGTATGAAATGGCTCTAAAGACTTGGTCGGATTGGTTGGAGGTCCATGTTAATCCAAACAAGACCAAGTTGTTCTTTGTTAGCATGTCACCTACTCACCAAAGCGCTGAAGAATGGGGTGTGACTACTGGCGAGAATTGCTACGGAGAAACTGAACCGATTAAGGAGGAGGGCTACAAGGGAAATGCATCGGATCCAAAAATGATGCGTGTTGTTGAGAATGTACTTGGGGAGCTGAAAACAAGAGGTTTGGATGTGCAAATACTCAATATAACGCAACTCTCAGAGTACAGAAAAGAAGGTCATCCATCAATTTATAGGAAGCAGTGGGATGCTCTAACAGAAAAGCAATTAGCAAAACCTAGCAGTTTTGCAGATTGTATACATTGGTGCCTCCCTGGAGTGCCAGACGTTTGGAATGAGCTCCTCTATGCTTACATTTTTCAAATGACAGGATGA

Protein Analysis

474

Amino Acids

54.96

Weight (kDa)

7.96

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 64 - 117 1.3e-21 PMR5 N terminal Domain
PC-Esterase PF13839 181 - 467 7.9e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011993)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1356
AccB7I CCANNNNNTGG 1 cut(s) 42
AccI GTMKAC 1 cut(s) 1348
AclWI GGATC 3 cut(s) 925, 1154, 1167
AcsI RAATTY 2 cut(s) 510, 939
AcuI CTGAAG 1 cut(s) 1095
AfaI GTAC 5 cut(s) 157, 262, 680, 1191, 1256
AfeI AGCGCT 1 cut(s) 1072
AfiI CCNNNNNNNGG 4 cut(s) 42, 426, 796, 882
AflII CTTAAG 1 cut(s) 310
AgeI ACCGGT 1 cut(s) 789
AgsI TTSAA 8 cut(s) 51, 547, 610, 706, 827, 871, 926, 1412
AjnI CCWGG 1 cut(s) 1363
AluBI AGCT 9 cut(s) 63, 192, 315, 518, 653, 667, 930, 1201, 1390
AluI AGCT 9 cut(s) 63, 192, 315, 518, 653, 667, 930, 1201, 1390
Alw21I GWGCWC 2 cut(s) 669, 1392
Alw26I GTCTC 2 cut(s) 366, 523
AlwI GGATC 3 cut(s) 925, 1154, 1167
Aor51HI AGCGCT 1 cut(s) 1072
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 60, 192
ApoI RAATTY 2 cut(s) 510, 939
AsiGI ACCGGT 1 cut(s) 789
AspA2I CCTAGG 1 cut(s) 356
AspLEI GCGC 1 cut(s) 1073
AspS9I GGNCC 2 cut(s) 894, 1009
AsuHPI GGTGA 4 cut(s) 767, 779, 1047, 1055
AsuNHI GCTAGC 1 cut(s) 518
AvaII GGWCC 2 cut(s) 894, 1009
AvrII CCTAGG 1 cut(s) 356
BamHI GGATCC 1 cut(s) 1159
BanI GGYRCC 1 cut(s) 1356
BanII GRGCYC 3 cut(s) 669, 748, 1392
Bbv12I GWGCWC 2 cut(s) 669, 1392
BbvI GCAGC 2 cut(s) 72, 179
BccI CCATC 4 cut(s) 324, 348, 929, 1282
BciT130I CCWGG 1 cut(s) 1365
BcoDI GTCTC 2 cut(s) 366, 523
BfaI CTAG 6 cut(s) 357, 519, 755, 837, 963, 1329
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 1074
BfrI CTTAAG 1 cut(s) 310
BisI GCNGC 2 cut(s) 61, 193
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 2 cut(s) 62, 194
Bme1390I CCNGG 1 cut(s) 1365
Bme18I GGWCC 2 cut(s) 894, 1009
BmgT120I GGNCC 2 cut(s) 894, 1009
BmiI GGNNCC 4 cut(s) 691, 747, 1161, 1358
BmrFI CCNGG 1 cut(s) 1365
BmsI GCATC 6 cut(s) 25, 841, 948, 1161, 1163, 1288
BmtI GCTAGC 1 cut(s) 522
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BpmI CTGGAG 3 cut(s) 346, 645, 1386
Bpu10I CCTNAGC 2 cut(s) 6, 572
BpuEI CTTGAG 3 cut(s) 547, 584, 653
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 41, 356, 630, 1363
BsaWI WCCGGW 2 cut(s) 789, 796
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 426, 796, 882
Bse118I RCCGGY 1 cut(s) 789
Bse1I ACTGG 3 cut(s) 229, 329, 1099
Bse3DI GCAATG 2 cut(s) 75, 749
BseBI CCWGG 1 cut(s) 1365
BseDI CCNNGG 4 cut(s) 41, 356, 630, 1363
BseGI GGATG 4 cut(s) 963, 1225, 1270, 1303
BseLI CCNNNNNNNGG 4 cut(s) 42, 426, 796, 882
BseMI GCAATG 2 cut(s) 75, 749
BseMII CTCAG 3 cut(s) 174, 783, 1263
BseNI ACTGG 3 cut(s) 229, 329, 1099
BseRI GAGGAG 2 cut(s) 1148, 1382
BseXI GCAGC 2 cut(s) 72, 179
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 1356
BshTI ACCGGT 1 cut(s) 789
BsiHKAI GWGCWC 2 cut(s) 669, 1392
BsiSI CCGG 2 cut(s) 790, 797
BslFI GGGAC 2 cut(s) 356, 403
BslI CCNNNNNNNGG 4 cut(s) 42, 426, 796, 882
BsmAI GTCTC 2 cut(s) 366, 523
BsmFI GGGAC 2 cut(s) 356, 403
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 366
Bsp1286I GDGCHC 3 cut(s) 669, 748, 1392
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 3 cut(s) 772, 917, 1159
Bsp19I CCATGG 1 cut(s) 630
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 3 cut(s) 175, 782, 1262
BspLI GGNNCC 4 cut(s) 691, 747, 1161, 1358
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 3 cut(s) 925, 1154, 1167
BspT107I GGYRCC 1 cut(s) 1356
BspTI CTTAAG 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 366
BsrDI GCAATG 2 cut(s) 75, 749
BsrFI RCCGGY 1 cut(s) 789
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 3 cut(s) 229, 329, 1099
BssAI RCCGGY 1 cut(s) 789
BssECI CCNNGG 4 cut(s) 41, 356, 630, 1363
BssMI GATC 3 cut(s) 772, 917, 1159
BssNAI GTATAC 1 cut(s) 1349
BssT1I CCWWGG 3 cut(s) 41, 356, 630
Bst1107I GTATAC 1 cut(s) 1349
Bst2UI CCWGG 1 cut(s) 1365
Bst4CI ACNGT 3 cut(s) 112, 172, 258
Bst6I CTCTTC 2 cut(s) 102, 369
BstAFI CTTAAG 1 cut(s) 310
BstAUI TGTACA 1 cut(s) 678
BstC8I GCNNGC 3 cut(s) 65, 520, 834
BstDEI CTNAG 6 cut(s) 6, 183, 539, 572, 769, 1249
BstDSI CCRYGG 1 cut(s) 630
BstEII GGTNACC 1 cut(s) 792
BstF5I GGATG 4 cut(s) 963, 1225, 1270, 1303
BstH2I RGCGCY 1 cut(s) 1074
BstHHI GCGC 1 cut(s) 1073
BstKTI GATC 3 cut(s) 775, 920, 1162
BstMAI GTCTC 2 cut(s) 366, 523
BstMBI GATC 3 cut(s) 772, 917, 1159
BstMWI GCNNNNNNNGC 2 cut(s) 568, 1104
BstNI CCWGG 1 cut(s) 1365
BstNSI RCATGY 2 cut(s) 836, 1054
BstPI GGTNACC 1 cut(s) 792
BstSCI CCNGG 1 cut(s) 1363
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 72, 179
BstX2I RGATCY 2 cut(s) 917, 1159
BstXI CCANNNNNNTGG 2 cut(s) 131, 1380
BstYI RGATCY 2 cut(s) 917, 1159
BstZ17I GTATAC 1 cut(s) 1349
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 4 cut(s) 963, 1225, 1270, 1303
BtsI GCAGTG 1 cut(s) 1298
BtsIMutI CAGTG 3 cut(s) 177, 263, 1298
Cac8I GCNNGC 3 cut(s) 65, 520, 834
CfoI GCGC 1 cut(s) 1073
Cfr10I RCCGGY 1 cut(s) 789
Cfr13I GGNCC 2 cut(s) 894, 1009
Csp6I GTAC 5 cut(s) 156, 261, 679, 1190, 1255
CspAI ACCGGT 1 cut(s) 789
CviAII CATG 6 cut(s) 631, 676, 833, 898, 1013, 1051
CviQI GTAC 5 cut(s) 156, 261, 679, 1190, 1255
DdeI CTNAG 6 cut(s) 6, 183, 539, 572, 769, 1249
DpnI GATC 3 cut(s) 774, 919, 1161
DpnII GATC 3 cut(s) 772, 917, 1159
Eam1104I CTCTTC 2 cut(s) 102, 369
EarI CTCTTC 2 cut(s) 102, 369
Ecl136II GAGCTC 2 cut(s) 667, 1390
Eco130I CCWWGG 3 cut(s) 41, 356, 630
Eco24I GRGCYC 3 cut(s) 669, 748, 1392
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 2 cut(s) 894, 1009
Eco47III AGCGCT 1 cut(s) 1072
Eco53kI GAGCTC 2 cut(s) 667, 1390
Eco57I CTGAAG 1 cut(s) 1095
Eco91I GGTNACC 1 cut(s) 792
EcoICRI GAGCTC 2 cut(s) 667, 1390
EcoO65I GGTNACC 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 1363
EcoT14I CCWWGG 3 cut(s) 41, 356, 630
EcoT22I ATGCAT 2 cut(s) 411, 1156
EcoT38I GRGCYC 3 cut(s) 669, 748, 1392
ErhI CCWWGG 3 cut(s) 41, 356, 630
FaeI CATG 6 cut(s) 634, 679, 836, 901, 1016, 1054
FalI AAGNNNNNCTT 2 cut(s) 1025, 1057
FaqI GGGAC 2 cut(s) 356, 403
FatI CATG 6 cut(s) 630, 675, 832, 897, 1012, 1050
FblI GTMKAC 1 cut(s) 1348
Fnu4HI GCNGC 2 cut(s) 61, 193
FokI GGATG 4 cut(s) 970, 1232, 1257, 1310
FriOI GRGCYC 3 cut(s) 669, 748, 1392
Fsp4HI GCNGC 2 cut(s) 61, 193
FspBI CTAG 6 cut(s) 357, 519, 755, 837, 963, 1329
GlaI GCGC 1 cut(s) 1072
GluI GCNGC 2 cut(s) 61, 193
GsuI CTGGAG 3 cut(s) 346, 645, 1386
HaeII RGCGCY 1 cut(s) 1074
HaeIII GGCC 1 cut(s) 284
HapII CCGG 2 cut(s) 790, 797
HhaI GCGC 1 cut(s) 1073
Hin1II CATG 6 cut(s) 634, 679, 836, 901, 1016, 1054
Hin6I GCGC 1 cut(s) 1071
HinP1I GCGC 1 cut(s) 1071
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 6 cut(s) 470, 602, 610, 647, 761, 784
HpaII CCGG 2 cut(s) 790, 797
HphI GGTGA 4 cut(s) 767, 779, 1047, 1055
Hpy166II GTNNAC 3 cut(s) 261, 681, 1349
Hpy188I TCNGA 8 cut(s) 56, 184, 274, 772, 934, 997, 1159, 1252
Hpy188III TCNNGA 2 cut(s) 319, 662
Hpy8I GTNNAC 3 cut(s) 261, 681, 1349
HpyAV CCTTC 3 cut(s) 712, 885, 1259
HpyCH4III ACNGT 3 cut(s) 112, 172, 258
HpyCH4IV ACGT 1 cut(s) 1377
HpyCH4V TGCA 9 cut(s) 67, 80, 107, 195, 409, 854, 1154, 1225, 1340
HpyF10VI GCNNNNNNNGC 2 cut(s) 568, 1104
HpyF3I CTNAG 6 cut(s) 6, 183, 539, 572, 769, 1249
HpySE526I ACGT 1 cut(s) 1377
Hsp92II CATG 6 cut(s) 634, 679, 836, 901, 1016, 1054
HspAI GCGC 1 cut(s) 1071
Kzo9I GATC 3 cut(s) 772, 917, 1159
LmnI GCTCC 5 cut(s) 440, 695, 751, 1198, 1395
Lsp1109I GCAGC 2 cut(s) 72, 179
LweI GCATC 6 cut(s) 25, 841, 948, 1161, 1163, 1288
MaeI CTAG 6 cut(s) 357, 519, 755, 837, 963, 1329
MaeII ACGT 1 cut(s) 1377
MaeIII GTNAC 5 cut(s) 252, 347, 792, 1053, 1087
MalI GATC 3 cut(s) 774, 919, 1161
MboI GATC 3 cut(s) 772, 917, 1159
MboII GAAGA 4 cut(s) 89, 161, 356, 1088
MfeI CAATTG 3 cut(s) 278, 729, 822
MflI RGATCY 2 cut(s) 917, 1159
MhlI GDGCHC 3 cut(s) 669, 748, 1392
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 975, 984
Mph1103I ATGCAT 2 cut(s) 411, 1156
MseI TTAA 4 cut(s) 311, 404, 1017, 1128
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 653
MspCI CTTAAG 1 cut(s) 310
MspI CCGG 2 cut(s) 790, 797
MspR9I CCNGG 1 cut(s) 1365
MunI CAATTG 3 cut(s) 278, 729, 822
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 1 cut(s) 1365
MwoI GCNNNNNNNGC 2 cut(s) 568, 1104
NcoI CCATGG 1 cut(s) 630
NdeII GATC 3 cut(s) 772, 917, 1159
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 6 cut(s) 634, 679, 836, 901, 1016, 1054
NlaIV GGNNCC 4 cut(s) 691, 747, 1161, 1358
NmuCI GTSAC 3 cut(s) 347, 1053, 1087
NsiI ATGCAT 2 cut(s) 411, 1156
NspI RCATGY 2 cut(s) 836, 1054
PaeI GCATGC 1 cut(s) 836
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 5 cut(s) 470, 602, 610, 761, 784
PflFI GACNNNGTC 1 cut(s) 991
PflMI CCANNNNNTGG 1 cut(s) 42
PinAI ACCGGT 1 cut(s) 789
PkrI GCNGC 2 cut(s) 62, 194
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
Psp124BI GAGCTC 2 cut(s) 669, 1392
Psp6I CCWGG 1 cut(s) 1363
PspEI GGTNACC 1 cut(s) 792
PspGI CCWGG 1 cut(s) 1363
PspN4I GGNNCC 4 cut(s) 691, 747, 1161, 1358
PspPI GGNCC 2 cut(s) 894, 1009
PsuI RGATCY 2 cut(s) 917, 1159
PsyI GACNNNGTC 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 5 cut(s) 157, 262, 680, 1191, 1256
RsaNI GTAC 5 cut(s) 156, 261, 679, 1190, 1255
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 2 cut(s) 669, 1392
SaqAI TTAA 4 cut(s) 311, 404, 1017, 1128
SatI GCNGC 2 cut(s) 61, 193
Sau3AI GATC 3 cut(s) 772, 917, 1159
Sau96I GGNCC 2 cut(s) 894, 1009
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 1 cut(s) 1365
SduI GDGCHC 3 cut(s) 669, 748, 1392
SfaNI GCATC 6 cut(s) 25, 841, 948, 1161, 1163, 1288
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 2 cut(s) 894, 1009
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 4 cut(s) 310, 526, 563, 668
SmoI CTYRAG 4 cut(s) 310, 526, 563, 668
SphI GCATGC 1 cut(s) 836
SspMI CTAG 6 cut(s) 357, 519, 755, 837, 963, 1329
SstI GAGCTC 2 cut(s) 669, 1392
StyD4I CCNGG 1 cut(s) 1363
StyI CCWWGG 3 cut(s) 41, 356, 630
TaaI ACNGT 3 cut(s) 112, 172, 258
TaiI ACGT 1 cut(s) 1380
TaqI TCGA 3 cut(s) 502, 613, 764
TatI WGTACW 5 cut(s) 155, 260, 678, 1189, 1254
TfiI GAWTC 5 cut(s) 470, 602, 610, 761, 784
Tru1I TTAA 4 cut(s) 311, 404, 1017, 1128
Tru9I TTAA 4 cut(s) 311, 404, 1017, 1128
TscAI CASTG 3 cut(s) 177, 263, 1298
TseFI GTSAC 3 cut(s) 347, 1053, 1087
TseI GCWGC 2 cut(s) 60, 192
Tsp45I GTSAC 3 cut(s) 347, 1053, 1087
TspDTI ATGAA 3 cut(s) 445, 797, 987
TspGWI ACGGA 3 cut(s) 427, 817, 1125
TspRI CASTG 3 cut(s) 177, 263, 1298
Tth111I GACNNNGTC 1 cut(s) 991
Van91I CCANNNNNTGG 1 cut(s) 42
Vha464I CTTAAG 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 894, 1009
XapI RAATTY 2 cut(s) 510, 939
XceI RCATGY 2 cut(s) 836, 1054
XmaJI CCTAGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 1348
XspI CTAG 6 cut(s) 357, 519, 755, 837, 963, 1329
Zsp2I ATGCAT 2 cut(s) 411, 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.