Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004308.1

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Reverse (-)

3286 .. 5254

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004308.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggcagtttttgagctttgtgggattgtttgttttcgtgttaaaacatataagcttaggttcaatgccacagcgttgcttgagaggctaaggaacaagaggcttgtgtatgttggggattccttgaatcgaaatcaatgggtttccatggtttgcctgatagagtcagctgttcctccagagctcaagtccatgtacaccaatggctccttgaccaccttcaaagcaactgaatacaatgccacaattgagttctattgggctccattgctagtggaatcgaactcagatcacccgatgaatcaccggttaccggaacggattgttagggttcaggcaattgaaaagcatgctagacattggactgatgcagactttcttgttttcaattcctatctttggtggagaaggtccatgatgagtgtcttgtggggatcttttgaaagctctgatggaatttacagagaggttgggatgcctagagtgtatgaaatggctctaaagacttggtcggattggttggaggtccatgttaatccaaacaagaccaagttgttctttgttagcatgtcacctactcaccaaagcgctgaagaatggggtgtgactactggcgagaattgctacggagaaactgaaccgattaaggaggagggctacaagggaaatgcatcggatccaaaaatgatgcgtgttgttgagaatgtacttggggagctgaaaacaagaggtttggatgtgcaaatactcaatataacgcaactctcagagtacagaaaagaaggtcatccatcaatttataggaagcagtgggatgctctaacagaaaagcaattagcaaaacctagcagttttgcagattgtatacattggtgcctccctggagtgccagacgtttggaatgagctcctctatgcttacatttttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

310

Amino Acids

36.1

Weight (kDa)

6.47

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	873
AccI	GTMKAC	1 cut(s)	865
AclWI	GGATC	3 cut(s)	442, 671, 684
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	3 cut(s)	197, 708, 773
AfeI	AGCGCT	1 cut(s)	589
AfiI	CCNNNNNNNGG	2 cut(s)	313, 399
AgeI	ACCGGT	1 cut(s)	306
AgsI	TTSAA	7 cut(s)	64, 127, 223, 344, 388, 443, 929
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	7 cut(s)	16, 55, 170, 184, 447, 718, 907
AluI	AGCT	7 cut(s)	16, 55, 170, 184, 447, 718, 907
Alw21I	GWGCWC	2 cut(s)	186, 909
AlwI	GGATC	3 cut(s)	442, 671, 684
Aor51HI	AGCGCT	1 cut(s)	589
ApoI	RAATTY	1 cut(s)	456
AsiGI	ACCGGT	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	411, 526
AsuHPI	GGTGA	4 cut(s)	284, 296, 564, 572
AvaII	GGWCC	2 cut(s)	411, 526
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	873
BanII	GRGCYC	3 cut(s)	186, 265, 909
Bbv12I	GWGCWC	2 cut(s)	186, 909
BccI	CCATC	2 cut(s)	446, 799
BciT130I	CCWGG	1 cut(s)	882
BfaI	CTAG	4 cut(s)	272, 354, 480, 846
BfoI	RGCGCY	1 cut(s)	591
Bme1390I	CCNGG	1 cut(s)	882
Bme18I	GGWCC	2 cut(s)	411, 526
BmgT120I	GGNCC	2 cut(s)	411, 526
BmiI	GGNNCC	4 cut(s)	208, 264, 678, 875
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	5 cut(s)	358, 465, 678, 680, 805
BpmI	CTGGAG	2 cut(s)	162, 903
Bpu10I	CCTNAGC	2 cut(s)	56, 89
BpuEI	CTTGAG	2 cut(s)	101, 170
BsaJI	CCNNGG	2 cut(s)	147, 880
BsaWI	WCCGGW	2 cut(s)	306, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 399
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	147, 880
BseGI	GGATG	4 cut(s)	480, 742, 787, 820
BseLI	CCNNNNNNNGG	2 cut(s)	313, 399
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	300, 780
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	2 cut(s)	665, 899
BshNI	GGYRCC	1 cut(s)	873
BshTI	ACCGGT	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	186, 909
BsiSI	CCGG	2 cut(s)	307, 314
BslI	CCNNNNNNNGG	2 cut(s)	313, 399
Bsp1286I	GDGCHC	3 cut(s)	186, 265, 909
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	289, 434, 676
Bsp19I	CCATGG	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	299, 779
BspLI	GGNNCC	4 cut(s)	208, 264, 678, 875
BspPI	GGATC	3 cut(s)	442, 671, 684
BspT107I	GGYRCC	1 cut(s)	873
BsrDI	GCAATG	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	147, 880
BssMI	GATC	3 cut(s)	289, 434, 676
BssNAI	GTATAC	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	866
Bst2UI	CCWGG	1 cut(s)	882
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	4 cut(s)	56, 89, 286, 766
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	480, 742, 787, 820
BstH2I	RGCGCY	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	3 cut(s)	292, 437, 679
BstMBI	GATC	3 cut(s)	289, 434, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 621
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	2 cut(s)	353, 571
BstPI	GGTNACC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	880
BstX2I	RGATCY	2 cut(s)	434, 676
BstXI	CCANNNNNNTGG	1 cut(s)	897
BstYI	RGATCY	2 cut(s)	434, 676
BstZ17I	GTATAC	1 cut(s)	866
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	4 cut(s)	480, 742, 787, 820
BtsI	GCAGTG	1 cut(s)	815
BtsIMutI	CAGTG	1 cut(s)	815
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	411, 526
Csp6I	GTAC	3 cut(s)	196, 707, 772
CspAI	ACCGGT	1 cut(s)	306
CviAII	CATG	6 cut(s)	148, 193, 350, 415, 530, 568
CviQI	GTAC	3 cut(s)	196, 707, 772
DdeI	CTNAG	4 cut(s)	56, 89, 286, 766
DpnI	GATC	3 cut(s)	291, 436, 678
DpnII	GATC	3 cut(s)	289, 434, 676
Ecl136II	GAGCTC	2 cut(s)	184, 907
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	3 cut(s)	186, 265, 909
Eco47I	GGWCC	2 cut(s)	411, 526
Eco47III	AGCGCT	1 cut(s)	589
Eco53kI	GAGCTC	2 cut(s)	184, 907
Eco57I	CTGAAG	1 cut(s)	612
Eco91I	GGTNACC	1 cut(s)	309
EcoICRI	GAGCTC	2 cut(s)	184, 907
EcoO65I	GGTNACC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	880
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	673
EcoT38I	GRGCYC	3 cut(s)	186, 265, 909
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	6 cut(s)	151, 196, 353, 418, 533, 571
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	6 cut(s)	147, 192, 349, 414, 529, 567
FblI	GTMKAC	1 cut(s)	865
FokI	GGATG	4 cut(s)	487, 749, 774, 827
FriOI	GRGCYC	3 cut(s)	186, 265, 909
FspBI	CTAG	4 cut(s)	272, 354, 480, 846
GlaI	GCGC	1 cut(s)	589
GsuI	CTGGAG	2 cut(s)	162, 903
HaeII	RGCGCY	1 cut(s)	591
HapII	CCGG	2 cut(s)	307, 314
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	6 cut(s)	151, 196, 353, 418, 533, 571
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	5 cut(s)	119, 127, 164, 278, 301
HpaII	CCGG	2 cut(s)	307, 314
HphI	GGTGA	4 cut(s)	284, 296, 564, 572
Hpy166II	GTNNAC	2 cut(s)	198, 866
Hpy188I	TCNGA	5 cut(s)	289, 451, 514, 676, 769
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	198, 866
HpyAV	CCTTC	3 cut(s)	229, 402, 776
HpyCH4IV	ACGT	1 cut(s)	894
HpyCH4V	TGCA	4 cut(s)	371, 671, 742, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 621
HpyF3I	CTNAG	4 cut(s)	56, 89, 286, 766
HpySE526I	ACGT	1 cut(s)	894
Hsp92II	CATG	6 cut(s)	151, 196, 353, 418, 533, 571
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	289, 434, 676
LmnI	GCTCC	4 cut(s)	212, 268, 715, 912
LpnPI	CCDG	9 cut(s)	170, 192, 320, 320, 327, 597, 867, 894, 903
LweI	GCATC	5 cut(s)	358, 465, 678, 680, 805
MaeI	CTAG	4 cut(s)	272, 354, 480, 846
MaeII	ACGT	1 cut(s)	894
MaeIII	GTNAC	3 cut(s)	309, 570, 604
MalI	GATC	3 cut(s)	291, 436, 678
MboI	GATC	3 cut(s)	289, 434, 676
MboII	GAAGA	1 cut(s)	605
MfeI	CAATTG	2 cut(s)	246, 339
MflI	RGATCY	2 cut(s)	434, 676
MhlI	GDGCHC	3 cut(s)	186, 265, 909
MluCI	AATT	7 cut(s)	246, 339, 388, 456, 619, 795, 833
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	492, 501
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	3 cut(s)	42, 534, 645
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	307, 314
MspR9I	CCNGG	1 cut(s)	882
MunI	CAATTG	2 cut(s)	246, 339
MvaI	CCWGG	1 cut(s)	882
MwoI	GCNNNNNNNGC	2 cut(s)	85, 621
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	289, 434, 676
NlaIII	CATG	6 cut(s)	151, 196, 353, 418, 533, 571
NlaIV	GGNNCC	4 cut(s)	208, 264, 678, 875
NmuCI	GTSAC	2 cut(s)	570, 604
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	2 cut(s)	353, 571
PaeI	GCATGC	1 cut(s)	353
PfeI	GAWTC	4 cut(s)	119, 127, 278, 301
PflFI	GACNNNGTC	1 cut(s)	508
PinAI	ACCGGT	1 cut(s)	306
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp124BI	GAGCTC	2 cut(s)	186, 909
Psp6I	CCWGG	1 cut(s)	880
PspEI	GGTNACC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	4 cut(s)	208, 264, 678, 875
PspPI	GGNCC	2 cut(s)	411, 526
PsuI	RGATCY	2 cut(s)	434, 676
PsyI	GACNNNGTC	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	197, 708, 773
RsaNI	GTAC	3 cut(s)	196, 707, 772
SacI	GAGCTC	2 cut(s)	186, 909
SaqAI	TTAA	3 cut(s)	42, 534, 645
Sau3AI	GATC	3 cut(s)	289, 434, 676
Sau96I	GGNCC	2 cut(s)	411, 526
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	882
SduI	GDGCHC	3 cut(s)	186, 265, 909
SfaNI	GCATC	5 cut(s)	358, 465, 678, 680, 805
SinI	GGWCC	2 cut(s)	411, 526
SmlI	CTYRAG	2 cut(s)	80, 185
SmoI	CTYRAG	2 cut(s)	80, 185
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	7 cut(s)	246, 339, 388, 456, 619, 795, 833
SspMI	CTAG	4 cut(s)	272, 354, 480, 846
SstI	GAGCTC	2 cut(s)	186, 909
StyD4I	CCNGG	1 cut(s)	880
StyI	CCWWGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	897
TaqI	TCGA	2 cut(s)	130, 281
TasI	AATT	7 cut(s)	246, 339, 388, 456, 619, 795, 833
TatI	WGTACW	3 cut(s)	195, 706, 771
TfiI	GAWTC	4 cut(s)	119, 127, 278, 301
Tru1I	TTAA	3 cut(s)	42, 534, 645
Tru9I	TTAA	3 cut(s)	42, 534, 645
TscAI	CASTG	1 cut(s)	815
TseFI	GTSAC	2 cut(s)	570, 604
Tsp45I	GTSAC	2 cut(s)	570, 604
TspDTI	ATGAA	2 cut(s)	314, 504
TspGWI	ACGGA	2 cut(s)	334, 642
TspRI	CASTG	1 cut(s)	815
Tth111I	GACNNNGTC	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	411, 526
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	2 cut(s)	353, 571
XmiI	GTMKAC	1 cut(s)	865
XspI	CTAG	4 cut(s)	272, 354, 480, 846
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.