AT2G38770

Intron-binding protein aquarius N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008765
Physical Location & Seq
Reverse (-)
16202942 .. 16210428
7487 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38770.1

Sequence Viewer

Length: 4530 bp
ATGACGAAGGTCTATGGAACTGGCACGTACGACTTCAAGCGCCACAGAGTGGCGGAGTATCCATTGGAGTTACCTAGCCATCCTGCTGAGAAGCCTCTAGAGTCAAAGCCTGGATCTAATTTGCCGAGCTCCATCACTTTATCGGAGATTCAGCAAGATAGGTTAACGAAAATCGCTGAGGAGAGCTGGATTAAGACTGGAGGTAAGCTCCCTGAGAAACCGTTCGATCCGGAGGTTGTGAAGGAGATTTATGTGACGGAGCTTAAGGTAACTAGTGGTCGTAAACCTGTTCCACTTCAGCGAGTTATGATTCTGGAAGTGAGTCAGTATTTGGAGAACTATCTATGGCCGAATTTTGATCCTGAGACTGCTACGTTCGAGCATGTTATGTCTATGATTCTTATGATTAACGAGAAGTTCCGGGAGAATGTGGCAGCTTGGATTTGCTTTCATGATCGGGATGATCTATTCAAAAAGTTTCTACAGAAGGTTCTTCGCCTTAAAGAGGGAAGAGACTTGACTATTGCTGAGAAGACAAACTATTTGGTCTTCATGATTAATGCTTTCCAGAGTTTGGAAGACGCAGTGGTTAATGAGATTGTTCTAAGTCTAGCAGGATTACAATCTTGGCACAGCTTGTCTTATGGACGTTTCCAGATGGAGCTCTGCCTTCAACCTGATCTAATTAAAAAGTGGAAGAGGTCATCAAAGAAATGGGCAGCTGAGGCAAAGTCAAAGGGAGAGAAATTTGATTTATCCTCATCCCCTGAAGCAAATTTTGTTCGAGGCCTAATAGAAGAATTCGTTGAGGTGCTTGATCATGGGGTTTTTGCGGATGAGGTTGATGATACTGCTGGATCTCAATTGGTCGATGATTCTTCTGTCTTATATTGTGAGAGATTCATGGAATTTCTTATTGACATGCTGAACCAACTTCCAACAAGAAGATACCTAAGACCTCTTGTGGCGGATATAGCAGTTGTTGCCAAATGTCGACTGAGTGCCCTATACAAACATGAAAAAGGGAAGCTTTTCGCCCAACTAGTTGACTTGTTACAGTTCTACGAAAAGTTTGAGATAAAGGATCATGATGGAACACAATTAACTGATGATGAAGCACTTCAATTTCATTACGATCGTTTTATGGCGTTTCAGCTACTTGCCTTTAAGAAAATACCTAAGTTGCAAGATCTGTCTTTGGCTAACATTGGTTCGATTCACAAGAGTTCTGATCTTCGGAGGAGATTGTCTGTGCTTTCTCTTGAAGATTTAAGGGATGTTGTCTGCTCAAAGCTCAAACTGGTTTCAAGACATGATCCTTGGGCAGATAGTAAAGATTTTCTGACTGAAGTCGTTGTCTCCTCTTTTGAGAAGCAACAGTCTCAGAAAGAAGCAATAAACGCTCTGCCTTTGTACCCAAATGAGCAAATCATGTGGGACGAAAGTGTTATTCCAAGCATTAATTATTCTGGGGAAGGTTGCCTTGCTCTTCCAAAGCTTAATCTTCAGTTTCTAACACTCCATGATTATCTCCTTAGAAACTTCAACCTCTTCCGTCTAGAATCCACCTATGAGATTCGTGAAGATATACAAGAAGCTGTACCACATCTTCTTGCACATATAAATAACGAGGGAGACACTGCTTTTCGTGGTTGGTCACGAATGGCGGTTCCTATTAATGATTTCAAAATCGCTCAGGTGAAACAGCCTAATATTGGAGAAGAGAAGCCTTCATCTGTGACAGCAGAAGTTACTTTCAGTATCAAGAGTTACAGAACGCAGATAAGATCTGAATGGAATTCCCTTAAAGAGCATGACGTGTTGTTTTTGCTTTGTATACGCCCTTCATTTGAGCCATTAGGTCCTGAGGAAGCTGATAAAGCTACAGTTCCACAGAGGCTCGGGCTTCAGTATGTTCGTGGTTGTGAAATCATCGATATCCGCGATGAGGAGGGTAATCTGATGAATGATTTTACTGGAAGAGTTAAACGGGATGAATGGAAGCCCCCAAAAGGTGAAATGAGGACTGTGACTGTCGCTTTAGATGCTGCACAGTATCATATAGATGTTACAGACATCGCTGAAAAAGGTGCTGAGGATGTGTATGGCACATTTAATGTGCTAATGAGGAGGAAACCAAAAGAGAACAACTTCAAGGCTATTCTGGAATCTATCAGAGATCTTATGAACGAATATTGTATTGTGCCGGAGTGGTTGCATAATGTTTTTCTTGGGTATGGCAACCCTTCTGCTGCACAGTGGCCTAATATGCCAAACCTGTTGGAAATAGTGGACTTCAAAGACACTTTCCTTAATGCAAATCATCTCAGTGAAAGTTTTTCAGATTATGAGGTTTCTTTCATCAATGCTGAAGGTGCTGAAGCTCTGGATCCAAGTCCTCCGTTTCGAATCACTCTTCCAAAGACACTAAAAGGAAATGGTGCTATTTCTGGAAACAAGATATCTGAAGTGAATCCAGCAGATAATGTTAATATGGTGGATGCTTCCCCGAAGGAGAAACTTATTGTTGAGGCATATACCCCACCTGACCCAGGGCCTTATCCTCAGGACCAGCCGAAGCAGAACTCAGTTAAATTTACACCTACACAGGTTGGAGCAATTATCTCTGGTATTCAGCCTGGGCTAACTATGGTGGTTGGTCCACCAGGTACCGGAAAGACTGATACAGCAGTGCAAATTTTGAATGTTCTATACCACAACTGTCCTTCTCAGAGGACATTGATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGGAGAGGGATGTACCAGCGCGGTATCTACTTCGTTTGGGTCAAGGTGAACAAGAGCTTGCCACTGATCTTGACTTTAGCAGACAAGGCCGTGTCAATGCCATGCTTGTTCGGCGTCTGGAACTCCTCAGTGAGGTTGAGAGACTAGCAAGATCTCTTCAGCTTCCAGAGGATGTAGGATATACTTGTGAAACAGCTGGATATTTCTGGTTGCTTCATGTATACTCGCGTTGGGAGCTGTTTCTCGCAGCTTGTGCAGGAAATGAAGACAATCAATCTTTTGTGCGAGATCGCTTCCCGTTCAAAGATTTCTTCTCAGACACCCCTAAACCTGTTTTTAATGGGGAGTCATTTGAGAAAGACATGAGGGCAGCTAAAGGTTGTTTCTCTCATCTCAAGACTGTGTTCCAAGAGCTAGAAGAGTGTAGGGCCTTTGAACTACTCAAGTCAACTGCTGATAGAGCAAATTATCTGATGACCAAACAAGCAAAGATTGTAGCAATGACGTGTACTCATGCTGCATTAAAGAGGAGAGATTTTCTTCAGTTAGGGTTCAAATATGATAACTTATTGATGGAAGAAAGTGCTCAGATTTTGGAAATTGAGACTTTCATACCAATGCTGCTTCAGAGGCAAGAAGATGGTCATGCACGACTCAAGCGCTGTATATTGATTGGTGATCACCACCAGCTGCCTCCCGTGGTGAAGAATATGGCTTTCCAGAAATATAGTCACATGGATCAGAGTTTGTTTACGAGGTTTGTTCGTCTTGGTATTCCTTATATTGAGCTCAATGCTCAAGGAAGAGCCAGGCCAAGTTTAGCCAAACTCTACAACTGGAGATACAGAGATTTAGGAGACCTTTCCATTGTTAAGGAAGCACCCATCTTCCAAAGAGCAAATGCTGGATTCTCATATGAATATCAGTTGGTGAATGTGCCTGATTATGAGGGGAGAGGAGAATCAACACCATCTCCTTGGTTTTATCAAAATCAGGGAGAAGCTGAATATATCGTCAGTGTCTATATATACATGAGATTGTTAGGATATCCTGCGAATAAGATATCAATATTGACAACATATAATGGTCAGAAGCTCTTAATCCGTGATGTTATCAACCGACGATGTGTTCCGTATCCTTTCATTGGCCCGCCGAGCAAGGTGACTACAGTGGACAAGTTCCAAGGACAACAGAATGATTTCATATTGCTCTCTCTTGTACGGACACGCTTCGTAGGTCATCTACGTGATGTAAGAAGGTTGGTAGTTGCAATGTCACGTGCTCGGCTCGGTTTGTATGTGTTCTGCCGCCGTTCGCTCTTTGAACAATGCTATGAGCTGCAACCAACGTTTCAACTTCTTCTTCAAAGACCCGATCGGCTCGGACTCAATTTTAATGAGAACACAGCATATACAGATCGTGTGGTGGAGGAAGTTGAAAATTCTTATCTCGTTCATGATGTTGAAGAGATGGCACACATAGTTGACGACAGGATGAACAAGTTCTACCAGGCACAAGGAGCTTATGAGCAATACCAAAACAACATGGCACAGATGGAAGATGGTAATCACGACATGGAGAGTGATTCAGTAGTAGATGGTGATGAATCTGAAAAAAATATGCAGCAGCTAAACCAATCTCCAGACATAGACGGTGAATTATCGAAGGAGGTGGTTGGAATGGAGGTGGACAATAATGGATTTAGCAGTGAGAATGGAAAGGCTGATGAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

1509

Amino Acids

173.02

Weight (kDa)

5.42

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 55 - 460 2.3e-131 Intron-binding protein aquarius N-terminal
Aquarius_N_2nd PF21143 542 - 711 4.5e-56 Intron-binding protein aquarius, beta-barrel
Aquarius_N_3rd PF21144 760 - 858 2.1e-19 Intron-binding protein aquarius insert domain
AAA_11 PF13086 879 - 1167 9.8e-28 AAA domain
AAA_12 PF13087 1176 - 1368 2e-25 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2669
AccB1I GGYRCC 1 cut(s) 2669
AccB7I CCANNNNNTGG 2 cut(s) 49, 574
AccI GTMKAC 3 cut(s) 994, 1837, 3012
AccII CGCG 3 cut(s) 1944, 2812, 3019
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 8 cut(s) 53, 833, 968, 1667, 1942, 2812, 3941, 4099
AclI AACGTT 1 cut(s) 4139
AclWI GGATC 9 cut(s) 121, 221, 353, 865, 1092, 1310, 2384, 2397, 3537
AcoI YGGCCR 1 cut(s) 347
AcsI RAATTY 9 cut(s) 352, 746, 775, 800, 908, 1798, 2594, 2697, 4231
AcvI CACGTG 1 cut(s) 4070
AcyI GRCGYC 1 cut(s) 2905
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 7 cut(s) 29, 1415, 1602, 2671, 2805, 3301, 4011
AfeI AGCGCT 1 cut(s) 3452
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 2 cut(s) 1818, 3296
AhlI ACTAGT 2 cut(s) 272, 1042
AjiI CACGTC 2 cut(s) 1819, 3297
AjnI CCWGG 6 cut(s) 109, 2551, 2638, 2665, 3599, 4299
Alw21I GWGCWC 5 cut(s) 131, 666, 3379, 3582, 4075
Alw26I GTCTC 8 cut(s) 359, 507, 1363, 1386, 1629, 2926, 3389, 3642
AlwI GGATC 9 cut(s) 121, 221, 353, 865, 1092, 1310, 2384, 2397, 3537
Ama87I CYCGRG 1 cut(s) 1901
Aor13HI TCCGGA 1 cut(s) 229
Aor51HI AGCGCT 1 cut(s) 3452
AoxI GGCC 8 cut(s) 347, 787, 2261, 2555, 2878, 3219, 3602, 3937
ApoI RAATTY 9 cut(s) 352, 746, 775, 800, 908, 1798, 2594, 2697, 4231
ArsI GACNNNNNNTTYG 2 cut(s) 526, 558
AseI ATTAAT 3 cut(s) 558, 1461, 1677
Asp700I GAANNNNTTC 6 cut(s) 221, 1031, 1119, 2150, 3989, 4292
Asp718I GGTACC 1 cut(s) 2669
AspLEI GCGC 3 cut(s) 42, 2812, 3453
AspS9I GGNCC 6 cut(s) 1862, 2555, 2569, 2660, 3219, 3938
AsuC2I CCSGG 1 cut(s) 422
AsuII TTCGAA 1 cut(s) 2407
AvaI CYCGRG 1 cut(s) 1901
AvaII GGWCC 3 cut(s) 1862, 2569, 2660
AxyI CCTNAGG 2 cut(s) 1866, 2565
BaeGI GKGCMC 1 cut(s) 1006
BaeI ACNNNNGTAYC 2 cut(s) 2676, 2709
BamHI GGATCC 1 cut(s) 2389
BanI GGYRCC 1 cut(s) 2669
BanII GRGCYC 3 cut(s) 131, 666, 3582
BarI GAAGNNNNNNTAC 4 cut(s) 1593, 1625, 1828, 1860
BbrPI CACGTG 1 cut(s) 4070
BbsI GAAGAC 4 cut(s) 539, 541, 585, 3063
Bbv12I GWGCWC 5 cut(s) 131, 666, 3379, 3582, 4075
BbvCI CCTCAGC 3 cut(s) 177, 723, 2094
BceAI ACGGC 2 cut(s) 2865, 4086
BciT130I CCWGG 6 cut(s) 111, 2553, 2640, 2667, 3601, 4301
BciVI GTATCC 2 cut(s) 69, 3936
BclI TGATCA 2 cut(s) 817, 3469
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 8 cut(s) 359, 507, 1363, 1386, 1629, 2926, 3389, 3642
BcuI ACTAGT 2 cut(s) 272, 1042
BfaI CTAG 8 cut(s) 75, 98, 273, 611, 1043, 1559, 2936, 3206
BfmI CTRYAG 3 cut(s) 482, 1884, 3957
BfoI RGCGCY 2 cut(s) 43, 3454
BfrI CTTAAG 1 cut(s) 263
BfuI GTATCC 2 cut(s) 69, 3936
BglII AGATCT 4 cut(s) 1189, 1787, 2179, 2942
Bme1390I CCNGG 7 cut(s) 111, 422, 2553, 2640, 2667, 3601, 4301
Bme18I GGWCC 3 cut(s) 1862, 2569, 2660
BmeT110I CYCGRG 1 cut(s) 1901
BmgBI CACGTC 2 cut(s) 1819, 3297
BmgT120I GGNCC 6 cut(s) 1862, 2555, 2569, 2660, 3219, 3938
BmiI GGNNCC 3 cut(s) 1671, 2391, 2671
BmrFI CCNGG 7 cut(s) 111, 422, 2553, 2640, 2667, 3601, 4301
BmsI GCATC 2 cut(s) 2035, 2491
BoxI GACNNNNGTC 2 cut(s) 8, 1349
BpiI GAAGAC 4 cut(s) 539, 541, 585, 3063
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BpmI CTGGAG 3 cut(s) 219, 3649, 4416
Bpu10I CCTNAGC 4 cut(s) 177, 723, 1695, 2094
Bpu14I TTCGAA 1 cut(s) 2407
BpuEI CTTGAG 4 cut(s) 3170, 3218, 3431, 3573
BpuMI CCSGG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 1935
BsaAI YACGTR 3 cut(s) 27, 4037, 4070
BsaBI GATNNNNATC 2 cut(s) 622, 4356
BsaHI GRCGYC 1 cut(s) 2905
BsaI GGTCTC 1 cut(s) 3642
BsaJI CCNNGG 7 cut(s) 1319, 2551, 2552, 2639, 3489, 3767, 3973
BsaWI WCCGGW 2 cut(s) 229, 2672
BsaXI ACNNNNNCTCC 2 cut(s) 3748, 3778
Bse1I ACTGG 5 cut(s) 25, 202, 1305, 1981, 3632
Bse21I CCTNAGG 2 cut(s) 1866, 2565
Bse3DI GCAATG 2 cut(s) 3297, 4068
Bse8I GATNNNNATC 2 cut(s) 622, 4356
BseAI TCCGGA 1 cut(s) 229
BseBI CCWGG 6 cut(s) 111, 2553, 2640, 2667, 3601, 4301
BseCI ATCGAT 1 cut(s) 1935
BseDI CCNNGG 7 cut(s) 1319, 2551, 2552, 2639, 3489, 3767, 3973
BseJI GATNNNNATC 2 cut(s) 622, 4356
BseMI GCAATG 2 cut(s) 3297, 4068
BseNI ACTGG 5 cut(s) 25, 202, 1305, 1981, 3632
BseRI GAGGAG 8 cut(s) 194, 1255, 1351, 1964, 2143, 2906, 3334, 3762
BseSI GKGCMC 1 cut(s) 1006
BsgI GTGCAG 3 cut(s) 2034, 2238, 3066
Bsh1236I CGCG 3 cut(s) 1944, 2812, 3019
Bsh1285I CGRYCG 2 cut(s) 1138, 4168
BshFI GGCC 8 cut(s) 349, 789, 2263, 2557, 2880, 3221, 3604, 3939
BshNI GGYRCC 1 cut(s) 2669
BshVI ATCGAT 1 cut(s) 1935
BsiEI CGRYCG 2 cut(s) 1138, 4168
BsiHKAI GWGCWC 5 cut(s) 131, 666, 3379, 3582, 4075
BsiHKCI CYCGRG 1 cut(s) 1901
BsiSI CCGG 4 cut(s) 230, 421, 2207, 2673
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 1451
BsmAI GTCTC 8 cut(s) 359, 507, 1363, 1386, 1629, 2926, 3389, 3642
BsmFI GGGAC 1 cut(s) 1451
BsnI GGCC 8 cut(s) 349, 789, 2263, 2557, 2880, 3221, 3604, 3939
Bso31I GGTCTC 1 cut(s) 3642
BsoBI CYCGRG 1 cut(s) 1901
Bsp119I TTCGAA 1 cut(s) 2407
Bsp1286I GDGCHC 6 cut(s) 131, 666, 1006, 3379, 3582, 4075
Bsp13I TCCGGA 1 cut(s) 229
BspACI CCGC 8 cut(s) 53, 833, 968, 1667, 1942, 2812, 3941, 4099
BspANI GGCC 8 cut(s) 349, 789, 2263, 2557, 2880, 3221, 3604, 3939
BspDI ATCGAT 1 cut(s) 1935
BspEI TCCGGA 1 cut(s) 229
BspFNI CGCG 3 cut(s) 1944, 2812, 3019
BspHI TCATGA 4 cut(s) 451, 552, 1087, 4246
BspLI GGNNCC 3 cut(s) 1671, 2391, 2671
BspPI GGATC 9 cut(s) 121, 221, 353, 865, 1092, 1310, 2384, 2397, 3537
BspQI GCTCTTC 2 cut(s) 1494, 3589
BspT104I TTCGAA 1 cut(s) 2407
BspT107I GGYRCC 1 cut(s) 2669
BspTI CTTAAG 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 3642
BsrDI GCAATG 2 cut(s) 3297, 4068
BsrI ACTGG 5 cut(s) 25, 202, 1305, 1981, 3632
BssECI CCNNGG 7 cut(s) 1319, 2551, 2552, 2639, 3489, 3767, 3973
BssNAI GTATAC 2 cut(s) 1838, 3013
BssNI GRCGYC 1 cut(s) 2905
BssT1I CCWWGG 3 cut(s) 1319, 3767, 3973
Bst1107I GTATAC 2 cut(s) 1838, 3013
Bst2UI CCWGG 6 cut(s) 111, 2553, 2640, 2667, 3601, 4301
BstACI GRCGYC 1 cut(s) 2905
BstAFI CTTAAG 1 cut(s) 263
BstAPI GCANNNNNTGC 2 cut(s) 983, 3044
BstBAI YACGTR 3 cut(s) 27, 4037, 4070
BstBI TTCGAA 1 cut(s) 2407
BstC8I GCNNGC 2 cut(s) 2850, 3941
BstDSI CCRYGG 1 cut(s) 3489
BstENI CCTNNNNNAGG 3 cut(s) 503, 2550, 2921
BstFNI CGCG 3 cut(s) 1944, 2812, 3019
BstH2I RGCGCY 2 cut(s) 43, 3454
BstHHI GCGC 3 cut(s) 42, 2812, 3453
BstMAI GTCTC 8 cut(s) 359, 507, 1363, 1386, 1629, 2926, 3389, 3642
BstMCI CGRYCG 2 cut(s) 1138, 4168
BstNI CCWGG 6 cut(s) 111, 2553, 2640, 2667, 3601, 4301
BstNSI RCATGY 2 cut(s) 386, 925
BstPAI GACNNNNGTC 2 cut(s) 8, 1349
BstSCI CCNGG 7 cut(s) 109, 420, 2551, 2638, 2665, 3599, 4299
BstSFI CTRYAG 3 cut(s) 482, 1884, 3957
BstSLI GKGCMC 1 cut(s) 1006
BstUI CGCG 3 cut(s) 1944, 2812, 3019
BstV2I GAAGAC 4 cut(s) 539, 541, 585, 3063
BstX2I RGATCY 7 cut(s) 113, 857, 1189, 1787, 2179, 2389, 2942
BstXI CCANNNNNNTGG 1 cut(s) 3768
BstYI RGATCY 7 cut(s) 113, 857, 1189, 1787, 2179, 2389, 2942
BstZ17I GTATAC 2 cut(s) 1838, 3013
Bsu15I ATCGAT 1 cut(s) 1935
Bsu36I CCTNAGG 2 cut(s) 1866, 2565
BsuI GTATCC 2 cut(s) 69, 3936
BsuRI GGCC 8 cut(s) 349, 789, 2263, 2557, 2880, 3221, 3604, 3939
BsuTUI ATCGAT 1 cut(s) 1935
BtgI CCRYGG 1 cut(s) 3489
BtgZI GCGATG 2 cut(s) 1959, 2062
BtrI CACGTC 2 cut(s) 1819, 3297
BtsI GCAGTG 4 cut(s) 591, 1638, 2697, 4504
Cac8I GCNNGC 2 cut(s) 2850, 3941
CciI TCATGA 4 cut(s) 451, 552, 1087, 4246
CfoI GCGC 3 cut(s) 42, 2812, 3453
Cfr13I GGNCC 6 cut(s) 1862, 2555, 2569, 2660, 3219, 3938
ClaI ATCGAT 1 cut(s) 1935
CseI GACGC 2 cut(s) 590, 2894
CsiI ACCWGGT 1 cut(s) 2665
Csp6I GTAC 7 cut(s) 28, 1414, 1601, 2670, 2804, 3300, 4010
CspCI CAANNNNNGTGG 4 cut(s) 1415, 1450, 2842, 2877
CviQI GTAC 7 cut(s) 28, 1414, 1601, 2670, 2804, 3300, 4010
DraIII CACNNNGTG 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 347
EciI GGCGGA 2 cut(s) 68, 983
Ecl136II GAGCTC 3 cut(s) 129, 664, 3580
Eco130I CCWWGG 3 cut(s) 1319, 3767, 3973
Eco147I AGGCCT 1 cut(s) 789
Eco24I GRGCYC 3 cut(s) 131, 666, 3582
Eco31I GGTCTC 1 cut(s) 3642
Eco32I GATATC 4 cut(s) 1939, 2463, 3839, 3855
Eco47I GGWCC 3 cut(s) 1862, 2569, 2660
Eco47III AGCGCT 1 cut(s) 3452
Eco53kI GAGCTC 3 cut(s) 129, 664, 3580
Eco72I CACGTG 1 cut(s) 4070
Eco81I CCTNAGG 2 cut(s) 1866, 2565
Eco88I CYCGRG 1 cut(s) 1901
EcoICRI GAGCTC 3 cut(s) 129, 664, 3580
EcoNI CCTNNNNNAGG 3 cut(s) 503, 2550, 2921
EcoO109I RGGNCCY 3 cut(s) 1862, 2555, 3219
EcoRI GAATTC 2 cut(s) 800, 1798
EcoRII CCWGG 6 cut(s) 109, 2551, 2638, 2665, 3599, 4299
EcoRV GATATC 4 cut(s) 1939, 2463, 3839, 3855
EcoT14I CCWWGG 3 cut(s) 1319, 3767, 3973
EcoT38I GRGCYC 3 cut(s) 131, 666, 3582
ErhI CCWWGG 3 cut(s) 1319, 3767, 3973
FalI AAGNNNNNCTT 4 cut(s) 1014, 1046, 1467, 1499
FaqI GGGAC 1 cut(s) 1451
FauI CCCGC 1 cut(s) 3948
FauNDI CATATG 1 cut(s) 3706
FbaI TGATCA 2 cut(s) 817, 3469
FblI GTMKAC 3 cut(s) 994, 1837, 3012
FriOI GRGCYC 3 cut(s) 131, 666, 3582
FspBI CTAG 8 cut(s) 75, 98, 273, 611, 1043, 1559, 2936, 3206
GlaI GCGC 3 cut(s) 41, 2811, 3452
GsuI CTGGAG 3 cut(s) 219, 3649, 4416
HaeII RGCGCY 2 cut(s) 43, 3454
HaeIII GGCC 8 cut(s) 349, 789, 2263, 2557, 2880, 3221, 3604, 3939
HapII CCGG 4 cut(s) 230, 421, 2207, 2673
HgaI GACGC 2 cut(s) 590, 2894
HhaI GCGC 3 cut(s) 42, 2812, 3453
Hin1I GRCGYC 1 cut(s) 2905
Hin6I GCGC 3 cut(s) 40, 2810, 3451
HinP1I GCGC 3 cut(s) 40, 2810, 3451
HincII GTYRAC 5 cut(s) 165, 995, 1048, 3240, 4276
HindII GTYRAC 5 cut(s) 165, 995, 1048, 3240, 4276
HindIII AAGCTT 2 cut(s) 1028, 1496
HpaI GTTAAC 1 cut(s) 165
HpaII CCGG 4 cut(s) 230, 421, 2207, 2673
Hpy99I CGWCG 1 cut(s) 3915
HpyCH4IV ACGT 8 cut(s) 26, 374, 649, 1818, 3296, 4036, 4069, 4139
HpySE526I ACGT 8 cut(s) 26, 374, 649, 1818, 3296, 4036, 4069, 4139
Hsp92I GRCGYC 1 cut(s) 2905
HspAI GCGC 3 cut(s) 40, 2810, 3451
Kpn2I TCCGGA 1 cut(s) 229
KpnI GGTACC 1 cut(s) 2673
Ksp22I TGATCA 2 cut(s) 817, 3469
KspAI GTTAAC 1 cut(s) 165
LguI GCTCTTC 2 cut(s) 1494, 3589
LmnI GCTCC 7 cut(s) 134, 213, 259, 661, 2615, 3025, 4310
LweI GCATC 2 cut(s) 2035, 2491
MabI ACCWGGT 1 cut(s) 2665
MaeI CTAG 8 cut(s) 75, 98, 273, 611, 1043, 1559, 2936, 3206
MaeII ACGT 8 cut(s) 26, 374, 649, 1818, 3296, 4036, 4069, 4139
MfeI CAATTG 1 cut(s) 863
MflI RGATCY 7 cut(s) 113, 857, 1189, 1787, 2179, 2389, 2942
MhlI GDGCHC 6 cut(s) 131, 666, 1006, 3379, 3582, 4075
MlyI GAGTC 5 cut(s) 110, 331, 3146, 3438, 4170
MmeI TCCRAC 4 cut(s) 962, 2262, 2593, 4447
MroI TCCGGA 1 cut(s) 229
MroXI GAANNNNTTC 6 cut(s) 221, 1031, 1119, 2150, 3989, 4292
MslI CAYNNNNRTG 4 cut(s) 2064, 2328, 3407, 4035
MspA1I CMGCKG 3 cut(s) 722, 2987, 3481
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 4 cut(s) 230, 421, 2207, 2673
MspR9I CCNGG 7 cut(s) 111, 422, 2553, 2640, 2667, 3601, 4301
MunI CAATTG 1 cut(s) 863
MvaI CCWGG 6 cut(s) 111, 2553, 2640, 2667, 3601, 4301
MvnI CGCG 3 cut(s) 1944, 2812, 3019
NciI CCSGG 1 cut(s) 422
NdeI CATATG 1 cut(s) 3706
NlaIV GGNNCC 3 cut(s) 1671, 2391, 2671
NmeAIII GCCGAG 3 cut(s) 150, 3969, 4054
NmuCI GTSAC 7 cut(s) 253, 1656, 1738, 2029, 3521, 3952, 4065
NspI RCATGY 2 cut(s) 386, 925
NspV TTCGAA 1 cut(s) 2407
PagI TCATGA 4 cut(s) 451, 552, 1087, 4246
PasI CCCWGGG 1 cut(s) 2552
PceI AGGCCT 1 cut(s) 789
PciSI GCTCTTC 2 cut(s) 1494, 3589
PcsI WCGNNNNNNNCGW 1 cut(s) 1941
PdmI GAANNNNTTC 6 cut(s) 221, 1031, 1119, 2150, 3989, 4292
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 2 cut(s) 49, 574
PfoI TCCNGGA 1 cut(s) 420
Ple19I CGATCG 2 cut(s) 1138, 4168
PleI GAGTC 5 cut(s) 109, 330, 3145, 3438, 4170
PmaCI CACGTG 1 cut(s) 4070
PmlI CACGTG 1 cut(s) 4070
PpsI GAGTC 5 cut(s) 109, 330, 3145, 3438, 4170
Ppu21I YACGTR 3 cut(s) 27, 4037, 4070
PpuMI RGGWCCY 1 cut(s) 1862
PshAI GACNNNNGTC 2 cut(s) 8, 1349
PshBI ATTAAT 3 cut(s) 558, 1461, 1677
Psp124BI GAGCTC 3 cut(s) 131, 666, 3582
Psp1406I AACGTT 1 cut(s) 4139
Psp5II RGGWCCY 1 cut(s) 1862
Psp6I CCWGG 6 cut(s) 109, 2551, 2638, 2665, 3599, 4299
PspCI CACGTG 1 cut(s) 4070
PspGI CCWGG 6 cut(s) 109, 2551, 2638, 2665, 3599, 4299
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 1671, 2391, 2671
PspPI GGNCC 6 cut(s) 1862, 2555, 2569, 2660, 3219, 3938
PspPPI RGGWCCY 1 cut(s) 1862
PsrI GAACNNNNNNTAC 2 cut(s) 4280, 4312
PsuI RGATCY 7 cut(s) 113, 857, 1189, 1787, 2179, 2389, 2942
PvuI CGATCG 2 cut(s) 1138, 4168
PvuII CAGCTG 3 cut(s) 722, 2987, 3481
RsaI GTAC 7 cut(s) 29, 1415, 1602, 2671, 2805, 3301, 4011
RsaNI GTAC 7 cut(s) 28, 1414, 1601, 2670, 2804, 3300, 4010
RseI CAYNNNNRTG 4 cut(s) 2064, 2328, 3407, 4035
SacI GAGCTC 3 cut(s) 131, 666, 3582
SalI GTCGAC 1 cut(s) 993
SapI GCTCTTC 2 cut(s) 1494, 3589
Sau96I GGNCC 6 cut(s) 1862, 2555, 2569, 2660, 3219, 3938
SchI GAGTC 5 cut(s) 110, 331, 3146, 3438, 4170
ScrFI CCNGG 7 cut(s) 111, 422, 2553, 2640, 2667, 3601, 4301
SduI GDGCHC 6 cut(s) 131, 666, 1006, 3379, 3582, 4075
SexAI ACCWGGT 1 cut(s) 2665
SfaNI GCATC 2 cut(s) 2035, 2491
SfcI CTRYAG 3 cut(s) 482, 1884, 3957
SfuI TTCGAA 1 cut(s) 2407
SinI GGWCC 3 cut(s) 1862, 2569, 2660
SmiMI CAYNNNNRTG 4 cut(s) 2064, 2328, 3407, 4035
SmlI CTYRAG 5 cut(s) 263, 3185, 3233, 3446, 3588
SmoI CTYRAG 5 cut(s) 263, 3185, 3233, 3446, 3588
SpeI ACTAGT 2 cut(s) 272, 1042
SseBI AGGCCT 1 cut(s) 789
SsiI CCGC 8 cut(s) 53, 833, 968, 1667, 1942, 2812, 3941, 4099
SspI AATATT 3 cut(s) 1714, 2195, 3861
SspMI CTAG 8 cut(s) 75, 98, 273, 611, 1043, 1559, 2936, 3206
SstI GAGCTC 3 cut(s) 131, 666, 3582
StuI AGGCCT 1 cut(s) 789
StyD4I CCNGG 7 cut(s) 109, 420, 2551, 2638, 2665, 3599, 4299
StyI CCWWGG 3 cut(s) 1319, 3767, 3973
TaiI ACGT 8 cut(s) 29, 377, 652, 1821, 3299, 4039, 4072, 4142
TaqI TCGA 9 cut(s) 225, 378, 784, 870, 994, 1214, 1935, 2407, 4454
TatI WGTACW 1 cut(s) 3299
TauI GCSGC 1 cut(s) 4101
TseFI GTSAC 7 cut(s) 253, 1656, 1738, 2029, 3521, 3952, 4065
Tsp45I GTSAC 7 cut(s) 253, 1656, 1738, 2029, 3521, 3952, 4065
TspGWI ACGGA 6 cut(s) 272, 1544, 2391, 3884, 3912, 4027
Van91I CCANNNNNTGG 2 cut(s) 49, 574
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 3 cut(s) 1862, 2569, 2660
VspI ATTAAT 3 cut(s) 558, 1461, 1677
XagI CCTNNNNNAGG 3 cut(s) 503, 2550, 2921
XapI RAATTY 9 cut(s) 352, 746, 775, 800, 908, 1798, 2594, 2697, 4231
XbaI TCTAGA 2 cut(s) 97, 1558
XceI RCATGY 2 cut(s) 386, 925
XmiI GTMKAC 3 cut(s) 994, 1837, 3012
XmnI GAANNNNTTC 6 cut(s) 221, 1031, 1119, 2150, 3989, 4292
XspI CTAG 8 cut(s) 75, 98, 273, 611, 1043, 1559, 2936, 3206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.