pycom02g24750

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0008765
Physical Location & Seq
Reverse (-)
22858699 .. 22860714
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g24750.3

Sequence Viewer

Length: 1068 bp
ATGGATCAGAGTCTCTTTACGAGGTTTGTCCGTTTGGGCATTCCTTATATTGAACTCAATGCCCAGGGTAGAGCCAGGCCAAGTATAGCCAAACTGTACAACTGGAGGAACAGAGATCTGGGTGACCTTCCATATGTAAAGGAGGGTGCCATATTCCATAGAGCAAATTCTGGATTCTCCTATGAATATCAGTTGGTGGATGTGCCAGATTACCATGGCAGAGGTGAGTCTACACCTTCACCTTATTTCTTCCAAAATGTGGGGGAAGCAGAATATGTGGTCAGTGTCTATATCTATATGCGTCTACTTGGGTACCCTGCAAGCAAAATCTCCATATTGACCACTTACAATGGCCAGAAGCTTTTAATCCGCGATGTTATCAACAGACGATGTGCTCCTTATGACTTCGTAGGCCTTCCCAGCAAGGTTACAACAGTTGATAAATTTCAAGGTCAGCAAAATGATTTTACACTGCTATCTCTTGTGCGTACTCGCATTGTGGGTCACCTTCGTGATGTTAGAAGATTGATTGTTGCAATGTCTCGTGCCCGACCGGGTCTTTATGTGTTTTGCCGTCGTTCTTTGTTTGAACAATGCTATGAACTTCAGCCTACATTTCAACGTCTACTTCAGAGACCTGACCACCTTGCTCTTAATTTGAACGAGATTACATCAAACACTGAGCGTCACGTTGAAGAAACTGGTCCTATTCATCTTGTCAGCAGTGTTGATGAGATGATTGGTATCTACCAGCAGCTTTATAAGGTAAAGTTCCATCTGTACATGCCTTATTCAGGTCGAGTAGATGAAATCCTTCCGATGGATACAGATGGGCACCATCCCATGAATACAGATATGGCTTTAACTTCTGATGGGGCACCAACAGATGATGGCCAGCATGGAAGCAATATGGAAGAAGACACTAAAGGCGATGTTGCCACCAATGGGCAGATCACGGAATCATCATTTGAAAACCAGTCAAATGGGGAGACAGATGCTAAAGCTAGCTTGAATGACATAAATATGCCACCTGAAAGCAATTCTGATGAAACAGAAACGGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

356

Amino Acids

40.44

Weight (kDa)

5.28

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 762
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 4 cut(s) 146, 312, 834, 877
AccB7I CCANNNNNTGG 1 cut(s) 259
AccI GTMKAC 3 cut(s) 230, 304, 625
AccII CGCG 1 cut(s) 372
AciI CCGC 1 cut(s) 370
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 352, 892
AcsI RAATTY 2 cut(s) 166, 443
AcuI CTGAAG 2 cut(s) 590, 614
AfaI GTAC 4 cut(s) 98, 314, 490, 782
AfiI CCNNNNNNNGG 4 cut(s) 259, 794, 820, 945
AgsI TTSAA 8 cut(s) 53, 449, 590, 620, 661, 695, 971, 1012
AjnI CCWGG 2 cut(s) 63, 74
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 4 cut(s) 361, 757, 1004, 1008
AluI AGCT 4 cut(s) 361, 757, 1004, 1008
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 4 cut(s) 17, 546, 628, 983
AlwI GGATC 1 cut(s) 12
AoxI GGCC 4 cut(s) 77, 352, 412, 892
ApeKI GCWGC 1 cut(s) 754
ApoI RAATTY 2 cut(s) 166, 443
Asp700I GAANNNNTTC 1 cut(s) 813
Asp718I GGTACC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 704
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 4 cut(s) 134, 231, 236, 497
AsuNHI GCTAGC 1 cut(s) 1004
AvaII GGWCC 1 cut(s) 704
BaeGI GKGCMC 3 cut(s) 550, 837, 880
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
BalI TGGCCA 2 cut(s) 354, 894
BanI GGYRCC 4 cut(s) 146, 312, 834, 877
BauI CACGAG 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 924
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 1 cut(s) 766
BccI CCATC 6 cut(s) 783, 814, 824, 846, 866, 884
BceAI ACGGC 1 cut(s) 558
BciT130I CCWGG 2 cut(s) 65, 76
BciVI GTATCC 1 cut(s) 817
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 4 cut(s) 17, 546, 628, 983
BfaI CTAG 1 cut(s) 1005
BfuI GTATCC 1 cut(s) 817
BglII AGATCT 1 cut(s) 115
BisI GCNGC 1 cut(s) 755
BlsI GCNGC 1 cut(s) 756
Bme1390I CCNGG 3 cut(s) 65, 76, 555
Bme18I GGWCC 1 cut(s) 704
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 4 cut(s) 148, 314, 836, 879
BmrFI CCNGG 3 cut(s) 65, 76, 555
BmsI GCATC 1 cut(s) 985
BmtI GCTAGC 1 cut(s) 1008
BpiI GAAGAC 1 cut(s) 924
BpmI CTGGAG 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 743
BsaI GGTCTC 1 cut(s) 628
BsaJI CCNNGG 3 cut(s) 63, 64, 214
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 794, 820, 945
Bse1I ACTGG 3 cut(s) 107, 706, 976
Bse3DI GCAATG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 743
BseBI CCWGG 2 cut(s) 65, 76
BseDI CCNNGG 3 cut(s) 63, 64, 214
BseGI GGATG 2 cut(s) 205, 838
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 4 cut(s) 259, 794, 820, 945
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 107, 706, 976
BseSI GKGCMC 3 cut(s) 550, 837, 880
BseXI GCAGC 1 cut(s) 766
BseYI CCCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 554
BshFI GGCC 4 cut(s) 79, 354, 414, 894
BshNI GGYRCC 4 cut(s) 146, 312, 834, 877
BsiEI CGRYCG 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 554
BslI CCNNNNNNNGG 4 cut(s) 259, 794, 820, 945
BsmAI GTCTC 4 cut(s) 17, 546, 628, 983
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 4 cut(s) 79, 354, 414, 894
Bso31I GGTCTC 1 cut(s) 628
Bsp1286I GDGCHC 4 cut(s) 397, 550, 837, 880
Bsp1407I TGTACA 2 cut(s) 96, 780
Bsp143I GATC 3 cut(s) 4, 115, 951
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 1 cut(s) 370
BspANI GGCC 4 cut(s) 79, 354, 414, 894
BspCNI CTCAG 1 cut(s) 673
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 4 cut(s) 148, 314, 836, 879
BspOI GCTAGC 1 cut(s) 1008
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 4 cut(s) 146, 312, 834, 877
BspTNI GGTCTC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 543
BsrGI TGTACA 2 cut(s) 96, 780
BsrI ACTGG 3 cut(s) 107, 706, 976
BssECI CCNNGG 3 cut(s) 63, 64, 214
BssMI GATC 3 cut(s) 4, 115, 951
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 543
Bst2UI CCWGG 2 cut(s) 65, 76
Bst4CI ACNGT 2 cut(s) 96, 436
Bst6I CTCTTC 1 cut(s) 1056
BstAUI TGTACA 2 cut(s) 96, 780
BstC8I GCNNGC 3 cut(s) 322, 896, 1006
BstDEI CTNAG 1 cut(s) 681
BstDSI CCRYGG 1 cut(s) 214
BstEII GGTNACC 2 cut(s) 122, 503
BstENI CCTNNNNNAGG 1 cut(s) 792
BstF5I GGATG 2 cut(s) 205, 838
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 3 cut(s) 7, 118, 954
BstMAI GTCTC 4 cut(s) 17, 546, 628, 983
BstMBI GATC 3 cut(s) 4, 115, 951
BstMCI CGRYCG 1 cut(s) 554
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstNI CCWGG 2 cut(s) 65, 76
BstNSI RCATGY 1 cut(s) 787
BstPI GGTNACC 2 cut(s) 122, 503
BstSCI CCNGG 3 cut(s) 63, 74, 553
BstSLI GKGCMC 3 cut(s) 550, 837, 880
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 766
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 983
BstYI RGATCY 1 cut(s) 115
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 4 cut(s) 79, 354, 414, 894
BtgI CCRYGG 1 cut(s) 214
BtgZI GCGATG 2 cut(s) 387, 945
BtsCI GGATG 2 cut(s) 205, 838
BtsI GCAGTG 2 cut(s) 470, 730
BtsIMutI CAGTG 4 cut(s) 289, 470, 678, 730
Cac8I GCNNGC 3 cut(s) 322, 896, 1006
Cfr13I GGNCC 1 cut(s) 704
CseI GACGC 2 cut(s) 290, 674
Csp6I GTAC 4 cut(s) 97, 313, 489, 781
CviAII CATG 4 cut(s) 215, 784, 844, 899
CviQI GTAC 4 cut(s) 97, 313, 489, 781
DdeI CTNAG 1 cut(s) 681
DpnI GATC 3 cut(s) 6, 117, 953
DpnII GATC 3 cut(s) 4, 115, 951
EaeI YGGCCR 2 cut(s) 352, 892
Eam1104I CTCTTC 1 cut(s) 1056
EarI CTCTTC 1 cut(s) 1056
Eco130I CCWWGG 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 704
Eco57I CTGAAG 2 cut(s) 590, 614
Eco91I GGTNACC 2 cut(s) 122, 503
EcoNI CCTNNNNNAGG 1 cut(s) 792
EcoO65I GGTNACC 2 cut(s) 122, 503
EcoRII CCWGG 2 cut(s) 63, 74
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 4 cut(s) 218, 787, 847, 902
FatI CATG 4 cut(s) 214, 783, 843, 898
FauNDI CATATG 1 cut(s) 133
FblI GTMKAC 3 cut(s) 230, 304, 625
Fnu4HI GCNGC 1 cut(s) 755
FokI GGATG 2 cut(s) 212, 825
Fsp4HI GCNGC 1 cut(s) 755
FspBI CTAG 1 cut(s) 1005
GluI GCNGC 1 cut(s) 755
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 4 cut(s) 79, 354, 414, 894
HapII CCGG 1 cut(s) 554
HgaI GACGC 2 cut(s) 290, 674
Hin1II CATG 4 cut(s) 218, 787, 847, 902
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 4 cut(s) 10, 174, 227, 959
HpaII CCGG 1 cut(s) 554
HphI GGTGA 4 cut(s) 134, 231, 236, 497
Hpy166II GTNNAC 3 cut(s) 231, 305, 626
Hpy188I TCNGA 5 cut(s) 9, 633, 819, 871, 1045
Hpy188III TCNNGA 2 cut(s) 171, 512
Hpy8I GTNNAC 3 cut(s) 231, 305, 626
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 5 cut(s) 137, 246, 425, 518, 824
HpyCH4III ACNGT 2 cut(s) 96, 436
HpyCH4IV ACGT 2 cut(s) 622, 690
HpyCH4V TGCA 2 cut(s) 320, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 1 cut(s) 681
HpySE526I ACGT 2 cut(s) 622, 690
Hsp92II CATG 4 cut(s) 218, 787, 847, 902
KpnI GGTACC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 4, 115, 951
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 766
LweI GCATC 1 cut(s) 985
MaeI CTAG 1 cut(s) 1005
MaeII ACGT 2 cut(s) 622, 690
MaeIII GTNAC 4 cut(s) 122, 427, 503, 686
MalI GATC 3 cut(s) 6, 117, 953
MboI GATC 3 cut(s) 4, 115, 951
MboII GAAGA 5 cut(s) 241, 534, 707, 926, 929
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 4 cut(s) 397, 550, 837, 880
MlsI TGGCCA 2 cut(s) 354, 894
MluCI AATT 4 cut(s) 166, 443, 655, 1039
MluNI TGGCCA 2 cut(s) 354, 894
MlyI GAGTC 2 cut(s) 19, 236
MnlI CCTC 4 cut(s) 15, 99, 136, 215
Mox20I TGGCCA 2 cut(s) 354, 894
MroXI GAANNNNTTC 1 cut(s) 813
MscI TGGCCA 2 cut(s) 354, 894
MseI TTAA 3 cut(s) 365, 654, 863
MslI CAYNNNNRTG 2 cut(s) 510, 1022
Msp20I TGGCCA 2 cut(s) 354, 894
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 3 cut(s) 65, 76, 555
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 2 cut(s) 65, 76
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 420
NciI CCSGG 1 cut(s) 555
NcoI CCATGG 1 cut(s) 214
NdeI CATATG 1 cut(s) 133
NdeII GATC 3 cut(s) 4, 115, 951
NheI GCTAGC 1 cut(s) 1004
NlaIII CATG 4 cut(s) 218, 787, 847, 902
NlaIV GGNNCC 4 cut(s) 148, 314, 836, 879
NmuCI GTSAC 3 cut(s) 122, 503, 686
NspI RCATGY 1 cut(s) 787
OliI CACNNNNGTG 1 cut(s) 510
PasI CCCWGGG 1 cut(s) 64
PceI AGGCCT 1 cut(s) 414
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 813
PfeI GAWTC 2 cut(s) 174, 959
PflFI GACNNNGTC 1 cut(s) 555
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 1 cut(s) 756
PleI GAGTC 2 cut(s) 18, 235
PpsI GAGTC 2 cut(s) 18, 235
PsiI TTATAA 1 cut(s) 762
Psp6I CCWGG 2 cut(s) 63, 74
PspEI GGTNACC 2 cut(s) 122, 503
PspFI CCCAGC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 63, 74
PspN4I GGNNCC 4 cut(s) 148, 314, 836, 879
PspPI GGNCC 1 cut(s) 704
PsuI RGATCY 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 555
RsaI GTAC 4 cut(s) 98, 314, 490, 782
RsaNI GTAC 4 cut(s) 97, 313, 489, 781
RseI CAYNNNNRTG 2 cut(s) 510, 1022
SaqAI TTAA 3 cut(s) 365, 654, 863
SatI GCNGC 1 cut(s) 755
Sau3AI GATC 3 cut(s) 4, 115, 951
Sau96I GGNCC 1 cut(s) 704
SchI GAGTC 2 cut(s) 19, 236
ScrFI CCNGG 3 cut(s) 65, 76, 555
SduI GDGCHC 4 cut(s) 397, 550, 837, 880
SfaNI GCATC 1 cut(s) 985
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 2 cut(s) 510, 1022
Sse9I AATT 4 cut(s) 166, 443, 655, 1039
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 1 cut(s) 370
SspMI CTAG 1 cut(s) 1005
StuI AGGCCT 1 cut(s) 414
StyD4I CCNGG 3 cut(s) 63, 74, 553
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 96, 436
TaiI ACGT 2 cut(s) 625, 693
TaqI TCGA 1 cut(s) 799
TasI AATT 4 cut(s) 166, 443, 655, 1039
TatI WGTACW 2 cut(s) 96, 780
TfiI GAWTC 2 cut(s) 174, 959
Tru1I TTAA 3 cut(s) 365, 654, 863
Tru9I TTAA 3 cut(s) 365, 654, 863
TscAI CASTG 4 cut(s) 289, 477, 685, 730
TseFI GTSAC 3 cut(s) 122, 503, 686
TseI GCWGC 1 cut(s) 754
Tsp45I GTSAC 3 cut(s) 122, 503, 686
TspDTI ATGAA 6 cut(s) 198, 615, 701, 822, 860, 1062
TspGWI ACGGA 2 cut(s) 20, 971
TspRI CASTG 4 cut(s) 289, 477, 685, 730
Tth111I GACNNNGTC 1 cut(s) 555
Van91I CCANNNNNTGG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 704
XagI CCTNNNNNAGG 1 cut(s) 792
XapI RAATTY 2 cut(s) 166, 443
XceI RCATGY 1 cut(s) 787
XmiI GTMKAC 3 cut(s) 230, 304, 625
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.