AT2G38790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008763
Physical Location & Seq
Reverse (-)
16214189 .. 16215264
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38790.1

Sequence Viewer

Length: 615 bp
ATGTCTATGGGGAAGAAACATCTTAACATCAATTCTCAGAATCACCAATCCACAAAGGACGAAGACAACAATTGCAAGAACAGTCTCTTCTTTGGATTGTTTGACGACCCTGAATCTAAAAGGTTGAGAAGTGGGAGTATGAAGAGACAGTACAGCGACATGGGAGATAGCTACCACAGAGTTTATGACGAACAAAATGATGATGTTGAATATGATGGTGATGGTGATGGTGATGAGGATGAGGGATCAAGGATGGACATGAGAGTACTGATGGTATTAGAGTATATGAGAGAGCTTTACGTGGGACAACTTCAGCTGCTTAAAAAGATGTTTCCAGGTGCAGCTAAAGACGAGTTTCTTGGTTTCTTCAACAAAATCGGAGACGCTGTGTCCCAAATTAAACAAGATTCTCGTCCTCCTACAAAGTCAATGACTATGCGGAGGAGTCTCAGTGCTGGTTCGCCACGTTTCACTTCGAAAGGGGTTAATTTGGGTCCATCAGATCTAAGACATGAAAGGTTTAAAGTTACAATGGTTAATGCTGGTGGAGCTGCTGGTTCTGCGGGAGGAGGTAAAGGTGGCTCGGCAGCTGGTCAGGGTCAGACCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.54

Weight (kDa)

7.8

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 439, 563
AclWI GGATC 1 cut(s) 253
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 2 cut(s) 152, 267
AgsI TTSAA 2 cut(s) 209, 370
AhdI GACNNNNNGTC 1 cut(s) 388
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 6 cut(s) 171, 295, 316, 344, 551, 590
AluI AGCT 6 cut(s) 171, 295, 316, 344, 551, 590
Alw26I GTCTC 4 cut(s) 89, 139, 375, 452
AlwI GGATC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 316, 341, 551, 587
AspS9I GGNCC 1 cut(s) 494
AsuHPI GGTGA 4 cut(s) 35, 230, 236, 242
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 494
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 303, 353, 538, 599
BccI CCATC 6 cut(s) 209, 215, 221, 247, 265, 505
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 4 cut(s) 89, 139, 375, 452
BglII AGATCT 1 cut(s) 502
BisI GCNGC 4 cut(s) 317, 342, 552, 588
BlsI GCNGC 4 cut(s) 318, 343, 553, 589
BmcAI AGTACT 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 494
BmeRI GACNNNNNGTC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 476
BsaAI YACGTR 1 cut(s) 301
BsaXI ACNNNNNCTCC 4 cut(s) 372, 402, 436, 466
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 244, 258
BseMII CTCAG 2 cut(s) 50, 463
BseRI GAGGAG 2 cut(s) 457, 582
BseXI GCAGC 4 cut(s) 303, 353, 538, 599
BsgI GTGCAG 1 cut(s) 360
BslFI GGGAC 2 cut(s) 318, 376
BsmAI GTCTC 4 cut(s) 89, 139, 375, 452
BsmBI CGTCTC 1 cut(s) 375
BsmFI GGGAC 2 cut(s) 318, 376
Bsp119I TTCGAA 1 cut(s) 476
Bsp143I GATC 2 cut(s) 245, 502
BspACI CCGC 2 cut(s) 439, 563
BspCNI CTCAG 2 cut(s) 49, 462
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 476
BssMI GATC 2 cut(s) 245, 502
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 83, 150
Bst6I CTCTTC 2 cut(s) 92, 137
BstBAI YACGTR 1 cut(s) 301
BstBI TTCGAA 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 36, 449, 506
BstF5I GGATG 2 cut(s) 244, 258
BstKTI GATC 2 cut(s) 248, 505
BstMAI GTCTC 4 cut(s) 89, 139, 375, 452
BstMBI GATC 2 cut(s) 245, 502
BstMWI GCNNNNNNNGC 2 cut(s) 548, 560
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 4 cut(s) 303, 353, 538, 599
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BtsCI GGATG 2 cut(s) 244, 258
BtsIMutI CAGTG 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 494
CseI GACGC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 151, 266
CviAII CATG 3 cut(s) 160, 259, 512
CviJI RGCY 7 cut(s) 171, 295, 316, 344, 551, 582, 590
CviKI_1 RGCY 7 cut(s) 171, 295, 316, 344, 551, 582, 590
CviQI GTAC 2 cut(s) 151, 266
DdeI CTNAG 3 cut(s) 36, 449, 506
DpnI GATC 2 cut(s) 247, 504
DpnII GATC 2 cut(s) 245, 502
DraI TTTAAA 1 cut(s) 523
DriI GACNNNNNGTC 1 cut(s) 388
Eam1104I CTCTTC 2 cut(s) 92, 137
Eam1105I GACNNNNNGTC 1 cut(s) 388
EarI CTCTTC 2 cut(s) 92, 137
Eco47I GGWCC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 375
FaeI CATG 3 cut(s) 163, 262, 515
FaqI GGGAC 2 cut(s) 318, 376
FatI CATG 3 cut(s) 159, 258, 511
FauI CCCGC 1 cut(s) 556
Fnu4HI GCNGC 4 cut(s) 317, 342, 552, 588
FokI GGATG 2 cut(s) 251, 265
Fsp4HI GCNGC 4 cut(s) 317, 342, 552, 588
GluI GCNGC 4 cut(s) 317, 342, 552, 588
HgaI GACGC 1 cut(s) 392
Hin1II CATG 3 cut(s) 163, 262, 515
HinfI GANTC 4 cut(s) 40, 113, 407, 445
HphI GGTGA 4 cut(s) 35, 230, 236, 242
Hpy188I TCNGA 4 cut(s) 39, 380, 502, 603
HpyCH4III ACNGT 2 cut(s) 83, 150
HpyCH4IV ACGT 2 cut(s) 300, 466
HpyCH4V TGCA 2 cut(s) 75, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 560
HpyF3I CTNAG 3 cut(s) 36, 449, 506
HpySE526I ACGT 2 cut(s) 300, 466
Hsp92II CATG 3 cut(s) 163, 262, 515
Kzo9I GATC 2 cut(s) 245, 502
LmnI GCTCC 1 cut(s) 548
LpnPI CCDG 8 cut(s) 123, 321, 348, 441, 528, 540, 576, 581
Lsp1109I GCAGC 4 cut(s) 303, 353, 538, 599
MaeII ACGT 2 cut(s) 300, 466
MaeIII GTNAC 1 cut(s) 526
MalI GATC 2 cut(s) 247, 504
MboI GATC 2 cut(s) 245, 502
MboII GAAGA 5 cut(s) 25, 74, 79, 154, 358
MfeI CAATTG 1 cut(s) 70
MflI RGATCY 1 cut(s) 502
MluCI AATT 4 cut(s) 31, 70, 396, 487
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 6 cut(s) 229, 235, 426, 435, 560, 563
MseI TTAA 6 cut(s) 24, 321, 399, 486, 522, 537
MspA1I CMGCKG 2 cut(s) 316, 590
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 548, 560
NdeII GATC 2 cut(s) 245, 502
NlaIII CATG 3 cut(s) 163, 262, 515
NlaIV GGNNCC 1 cut(s) 495
NmeAIII GCCGAG 1 cut(s) 563
NspV TTCGAA 1 cut(s) 476
PfeI GAWTC 3 cut(s) 40, 113, 407
PkrI GCNGC 4 cut(s) 318, 343, 553, 589
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
Ppu21I YACGTR 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 1 cut(s) 494
PsuI RGATCY 1 cut(s) 502
PvuII CAGCTG 2 cut(s) 316, 590
RsaI GTAC 2 cut(s) 152, 267
RsaNI GTAC 2 cut(s) 151, 266
SaqAI TTAA 6 cut(s) 24, 321, 399, 486, 522, 537
SatI GCNGC 4 cut(s) 317, 342, 552, 588
Sau3AI GATC 2 cut(s) 245, 502
Sau96I GGNCC 1 cut(s) 494
ScaI AGTACT 1 cut(s) 267
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 1 cut(s) 494
Sse9I AATT 4 cut(s) 31, 70, 396, 487
SsiI CCGC 2 cut(s) 439, 563
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 83, 150
TaiI ACGT 2 cut(s) 303, 469
TaqI TCGA 1 cut(s) 476
TasI AATT 4 cut(s) 31, 70, 396, 487
TatI WGTACW 2 cut(s) 150, 265
TfiI GAWTC 3 cut(s) 40, 113, 407
Tru1I TTAA 6 cut(s) 24, 321, 399, 486, 522, 537
Tru9I TTAA 6 cut(s) 24, 321, 399, 486, 522, 537
TscAI CASTG 1 cut(s) 457
TseI GCWGC 4 cut(s) 316, 341, 551, 587
TspDTI ATGAA 2 cut(s) 155, 528
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 494
ZrmI AGTACT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.