Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Reverse (-)

19358779 .. 19360716

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0107800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTACAGATCAGCAGCTAAGCGGCTTCTACATTCCTTTGCTCCACCCTTGAGTAACAGTAGCAGCAACCGTGTTGTTCGGTTTCGCCCTCTTCAGTCCCTCATCAGTCATTCTCGCTTTTCCACTACTGTCAACTCTGAACCCTTTGTCAGTCAAAACCCTACTTACTCAGATTCCACGCCGTCAACAGCCGATCACACGCGCAGACCAAGAGTAGAATACCAAGATGAGCAAGCTCGCGTGCTCCAAGCCTCACTTCCCCATGTCATAAGGTTGGGGTGGAGTGAAGCAGCTATGATTGCTGGTGCGAGGGATGTTGGTGTGTCTCCGTCAATTGTGGGATCGTTCCCAAGGAAAGAGGCTGCCCTTGTTGAGTTTTTCATGGATGACTGCCTGCAAAGGCTCAGTGATACAATTGAGTCTGGTACAGAGGAGTTGAGAAGTTTGATACCCAGCGAGCGTATCACCAAGCTTGTAAGAATTCGCTTGGAAATGCAGGCGCCCTACATATCAAAATGGCCTCAAGCTCTTAGCATCCAGGCACAACCTGTGAATGTTCCCACAAGTTTTAAGCAGAGGGCGCTCCTTGTTGATGAGATCTGGCACGGTGCTGGTGATGACACCTCTGATTTTGATTGGTATGTGAAACGGACTGTCCTTGGAGGGATATACTCCACAACTGAGATTTACATGCTTACTGATAATTCCCCAAATTTTTGTGATACGTGGGCATTCTTGGATAATCGGGTGAAAGATTCTTTCGACTTGAAGAAGACCATTCAAGAGGCAACATACTTGGCAGAAGCCGTTGGTACTGGAATGGGGACCTCTTTGCAAGGATTTGTGAAGAGCGTGTTTCGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

288

Amino Acids

32.31

Weight (kDa)

6.98

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COQ9	PF08511	186 - 255	1.2e-27	COQ9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AccII	CGCG	2 cut(s)	202, 240
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	480, 712
AcuI	CTGAAG	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	3 cut(s)	5, 427, 814
AgsI	TTSAA	2 cut(s)	769, 782
AjnI	CCWGG	1 cut(s)	537
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	5 cut(s)	17, 236, 293, 472, 527
AluI	AGCT	5 cut(s)	17, 236, 293, 472, 527
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	4 cut(s)	14, 63, 290, 362
ApoI	RAATTY	2 cut(s)	480, 712
AspLEI	GCGC	3 cut(s)	204, 502, 583
AspS9I	GGNCC	1 cut(s)	825
AsuHPI	GGTGA	3 cut(s)	457, 626, 760
AvaII	GGWCC	1 cut(s)	825
BanI	GGYRCC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	779
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	26, 75, 302, 349
BceAI	ACGGC	2 cut(s)	166, 791
BciT130I	CCWGG	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	330
BfoI	RGCGCY	2 cut(s)	503, 584
BglII	AGATCT	1 cut(s)	597
BisI	GCNGC	5 cut(s)	15, 23, 64, 291, 363
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	5 cut(s)	16, 24, 65, 292, 364
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	825
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	2 cut(s)	501, 826
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	779
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	2 cut(s)	70, 507
BsaAI	YACGTR	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	350, 658
Bse1I	ACTGG	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	350, 658
BseGI	GGATG	3 cut(s)	319, 391, 534
BseMII	CTCAG	3 cut(s)	183, 418, 672
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	4 cut(s)	26, 75, 302, 349
BseYI	CCCAGC	1 cut(s)	452
Bsh1236I	CGCG	2 cut(s)	202, 240
BshFI	GGCC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	2 cut(s)	82, 838
BsmAI	GTCTC	1 cut(s)	330
BsmFI	GGGAC	2 cut(s)	82, 838
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	8, 193, 341, 597
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	3 cut(s)	182, 417, 673
BspFNI	CGCG	2 cut(s)	202, 240
BspLI	GGNNCC	2 cut(s)	501, 826
BspPI	GGATC	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	842
BspT107I	GGYRCC	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	820
BssECI	CCNNGG	2 cut(s)	350, 658
BssMI	GATC	4 cut(s)	8, 193, 341, 597
BssNI	GRCGYC	1 cut(s)	500
BssT1I	CCWWGG	2 cut(s)	350, 658
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	5 cut(s)	59, 71, 130, 608, 655
Bst6I	CTCTTC	2 cut(s)	96, 842
BstACI	GRCGYC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	726
BstC8I	GCNNGC	6 cut(s)	234, 238, 242, 395, 458, 498
BstDEI	CTNAG	5 cut(s)	18, 169, 404, 530, 681
BstF5I	GGATG	3 cut(s)	319, 391, 534
BstFNI	CGCG	2 cut(s)	202, 240
BstH2I	RGCGCY	2 cut(s)	503, 584
BstHHI	GCGC	3 cut(s)	204, 502, 583
BstKTI	GATC	4 cut(s)	11, 196, 344, 600
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	4 cut(s)	8, 193, 341, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 580
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	537
BstUI	CGCG	2 cut(s)	202, 240
BstV1I	GCAGC	4 cut(s)	26, 75, 302, 349
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	1 cut(s)	597
BstYI	RGATCY	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	520
BtsCI	GGATG	3 cut(s)	319, 391, 534
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	6 cut(s)	234, 238, 242, 395, 458, 498
CfoI	GCGC	3 cut(s)	204, 502, 583
Cfr13I	GGNCC	1 cut(s)	825
Csp6I	GTAC	3 cut(s)	4, 426, 813
CviAII	CATG	3 cut(s)	263, 382, 691
CviQI	GTAC	3 cut(s)	4, 426, 813
DdeI	CTNAG	5 cut(s)	18, 169, 404, 530, 681
DinI	GGCGCC	1 cut(s)	501
DpnI	GATC	4 cut(s)	10, 195, 343, 599
DpnII	GATC	4 cut(s)	8, 193, 341, 597
Eam1104I	CTCTTC	2 cut(s)	96, 842
EarI	CTCTTC	2 cut(s)	96, 842
Eco130I	CCWWGG	2 cut(s)	350, 658
Eco47I	GGWCC	1 cut(s)	825
Eco57I	CTGAAG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	825
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	350, 658
EgeI	GGCGCC	1 cut(s)	501
EheI	GGCGCC	1 cut(s)	501
ErhI	CCWWGG	2 cut(s)	350, 658
FaeI	CATG	3 cut(s)	266, 385, 694
FaiI	YATR	9 cut(s)	264, 269, 296, 383, 509, 642, 670, 692, 793
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	2 cut(s)	82, 838
FatI	CATG	3 cut(s)	262, 381, 690
Fnu4HI	GCNGC	5 cut(s)	15, 23, 64, 291, 363
FokI	GGATG	3 cut(s)	326, 398, 521
Fsp4HI	GCNGC	5 cut(s)	15, 23, 64, 291, 363
GlaI	GCGC	3 cut(s)	203, 501, 582
GluI	GCNGC	5 cut(s)	15, 23, 64, 291, 363
GsaI	CCCAGC	1 cut(s)	456
HaeII	RGCGCY	2 cut(s)	503, 584
HaeIII	GGCC	1 cut(s)	520
HhaI	GCGC	3 cut(s)	204, 502, 583
Hin1I	GRCGYC	1 cut(s)	500
Hin1II	CATG	3 cut(s)	266, 385, 694
Hin6I	GCGC	3 cut(s)	202, 500, 581
HinP1I	GCGC	3 cut(s)	202, 500, 581
HincII	GTYRAC	2 cut(s)	133, 186
HindII	GTYRAC	2 cut(s)	133, 186
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	173, 419, 755
HphI	GGTGA	3 cut(s)	457, 626, 760
Hpy166II	GTNNAC	2 cut(s)	133, 186
Hpy188I	TCNGA	3 cut(s)	139, 172, 628
Hpy188III	TCNNGA	1 cut(s)	782
Hpy8I	GTNNAC	2 cut(s)	133, 186
HpyCH4III	ACNGT	5 cut(s)	59, 71, 130, 608, 655
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	3 cut(s)	397, 496, 835
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 580
HpyF3I	CTNAG	5 cut(s)	18, 169, 404, 530, 681
HpySE526I	ACGT	1 cut(s)	725
Hsp92I	GRCGYC	1 cut(s)	500
Hsp92II	CATG	3 cut(s)	266, 385, 694
HspAI	GCGC	3 cut(s)	202, 500, 581
KasI	GGCGCC	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	8, 193, 341, 597
LguI	GCTCTTC	1 cut(s)	842
LmnI	GCTCC	3 cut(s)	46, 249, 588
Lsp1109I	GCAGC	4 cut(s)	26, 75, 302, 349
LweI	GCATC	1 cut(s)	543
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	4 cut(s)	10, 195, 343, 599
MboI	GATC	4 cut(s)	8, 193, 341, 597
MboII	GAAGA	4 cut(s)	83, 781, 784, 859
MfeI	CAATTG	2 cut(s)	333, 414
MflI	RGATCY	1 cut(s)	597
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	5 cut(s)	333, 414, 480, 703, 712
Mly113I	GGCGCC	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	428
MseI	TTAA	1 cut(s)	570
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	2 cut(s)	333, 414
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	2 cut(s)	202, 240
MwoI	GCNNNNNNNGC	2 cut(s)	299, 580
NarI	GGCGCC	1 cut(s)	500
NdeII	GATC	4 cut(s)	8, 193, 341, 597
NlaIII	CATG	3 cut(s)	266, 385, 694
NlaIV	GGNNCC	2 cut(s)	501, 826
NspI	RCATGY	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	842
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	173, 755
PkrI	GCNGC	5 cut(s)	16, 24, 65, 292, 364
PleI	GAGTC	1 cut(s)	427
PluTI	GGCGCC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	427
Ppu21I	YACGTR	1 cut(s)	726
PpuMI	RGGWCCY	1 cut(s)	825
Psp5II	RGGWCCY	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	501, 826
PspPI	GGNCC	1 cut(s)	825
PspPPI	RGGWCCY	1 cut(s)	825
PsuI	RGATCY	1 cut(s)	597
RsaI	GTAC	3 cut(s)	5, 427, 814
RsaNI	GTAC	3 cut(s)	4, 426, 813
SapI	GCTCTTC	1 cut(s)	842
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	5 cut(s)	15, 23, 64, 291, 363
Sau3AI	GATC	4 cut(s)	8, 193, 341, 597
Sau96I	GGNCC	1 cut(s)	825
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	543
SfoI	GGCGCC	1 cut(s)	501
SinI	GGWCC	1 cut(s)	825
SmlI	CTYRAG	2 cut(s)	49, 522
SmoI	CTYRAG	2 cut(s)	49, 522
Sse9I	AATT	5 cut(s)	333, 414, 480, 703, 712
SsiI	CCGC	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	350, 658
TaaI	ACNGT	5 cut(s)	59, 71, 130, 608, 655
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	1 cut(s)	762
TasI	AATT	5 cut(s)	333, 414, 480, 703, 712
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	173, 755
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	4 cut(s)	14, 63, 290, 362
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	2 cut(s)	318, 664
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	825
XapI	RAATTY	2 cut(s)	480, 712
XceI	RCATGY	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.