Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Forward (+)

31824268 .. 31825328

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1248200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTATGGAAATTGTGGTGGATGCGGCGTCGTTTGACGCCGAGCTGTTGCAGCTCAATGATTTGTCTCCTTTGGCCCTCAAATCGAATCCGAGCTACGTCGAGTCGCTGTTCGAGCAGTGGCTTTCGCTTCCCGATACTAATCGCCTGGTGACACAACTGCTAACTGAAGCAAAGGCAGGTAGGCCTCTGAATGTTCAGGGAAATTCTTCTAGTCCACATGCCACTGCAGGCAGTACTTTGCCTTCTATGTTTCCAACCAAAGTGGGACAAAGGGAAGGCCCCACAGTCCCGGAAAGAGACTCCACCTCTTCCATCCTCTCGGGTGCGTTCATCAGCCAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7

Protein Analysis

116

Amino Acids

12.29

Weight (kDa)

4.61

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AciI	CCGC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	2 cut(s)	29, 39
AfaI	GTAC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	46, 55, 96
AluI	AGCT	3 cut(s)	46, 55, 96
Alw26I	GTCTC	2 cut(s)	72, 294
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	3 cut(s)	75, 185, 280
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	76, 281
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	322
BarI	GAAGNNNNNNTAC	2 cut(s)	229, 261
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	72, 294
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	342
BisI	GCNGC	2 cut(s)	27, 53
BlsI	GCNGC	2 cut(s)	28, 54
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	149, 293
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	76, 281
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	149, 293
BmsI	GCATC	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	29, 39
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	28, 315
BseJI	GATNNNNATC	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	3 cut(s)	77, 187, 282
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	2 cut(s)	275, 282
BsmAI	GTCTC	2 cut(s)	72, 294
BsmFI	GGGAC	2 cut(s)	275, 282
BsnI	GGCC	3 cut(s)	77, 187, 282
BsoBI	CYCGRG	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	3 cut(s)	77, 187, 282
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	170
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	2 cut(s)	29, 39
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	316
BstACI	GRCGYC	2 cut(s)	29, 39
BstC8I	GCNNGC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	28, 315
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	2 cut(s)	72, 294
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 115
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	147, 291
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	77, 187, 282
BtsCI	GGATG	2 cut(s)	28, 315
BtsI	GCAGTG	2 cut(s)	125, 225
BtsIMutI	CAGTG	2 cut(s)	125, 225
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	76, 281
CseI	GACGC	2 cut(s)	18, 47
Csp6I	GTAC	1 cut(s)	237
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	9 cut(s)	5, 46, 55, 77, 96, 124, 187, 282, 339
CviKI_1	RGCY	9 cut(s)	5, 46, 55, 77, 96, 124, 187, 282, 339
CviQI	GTAC	1 cut(s)	237
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	224
FaiI	YATR	3 cut(s)	8, 222, 251
FaqI	GGGAC	2 cut(s)	275, 282
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	27, 53
FokI	GGATG	2 cut(s)	35, 302
Fsp4HI	GCNGC	2 cut(s)	27, 53
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	27, 53
HaeIII	GGCC	3 cut(s)	77, 187, 282
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	2 cut(s)	18, 47
Hin1I	GRCGYC	2 cut(s)	29, 39
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	3 cut(s)	88, 104, 302
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	93, 192, 347
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	218
Hpy99I	CGWCG	2 cut(s)	34, 104
HpyAV	CCTTC	2 cut(s)	255, 272
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	52, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 115
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	29, 39
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	342
LpnPI	CCDG	6 cut(s)	134, 161, 165, 185, 216, 306
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	2 cut(s)	201, 303
MflI	RGATCY	1 cut(s)	342
MluCI	AATT	2 cut(s)	12, 205
MlyI	GAGTC	2 cut(s)	113, 296
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	4 cut(s)	89, 198, 319, 329
MroXI	GAANNNNTTC	1 cut(s)	208
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	149, 293
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	52, 115
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	283
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	2 cut(s)	28, 54
PleI	GAGTC	2 cut(s)	112, 296
PpsI	GAGTC	2 cut(s)	112, 296
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	2 cut(s)	76, 281
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SatI	GCNGC	2 cut(s)	27, 53
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	2 cut(s)	76, 281
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	2 cut(s)	113, 296
ScrFI	CCNGG	2 cut(s)	149, 293
SetI	ASST	6 cut(s)	48, 57, 98, 102, 184, 311
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	12, 205
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	147, 291
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	86, 102, 114
TasI	AATT	2 cut(s)	12, 205
TatI	WGTACW	1 cut(s)	236
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	2 cut(s)	125, 232
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	322
TspRI	CASTG	2 cut(s)	125, 232
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.