Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Forward (+)

28756740 .. 28761359

Gene Structure 4620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCCCTGAAGCCTTTTGTTAATCAACTTGGGTATGTCAATGTTCCTCAAGAAATCAACAGGCTGAGGTGCGGGGTGAACTATCACGCTCTTAAATTTCTTCCTGAAATAGAGCAGATGGCTGATTTGTTGGCATCAAGGATGAGAAACCGCACCGGAAGTTCCAATCCTTATATGGCCCTGCATCTTAGGTTTGAGAAGGGCATGTTTGGTCTATCCTTCTGTGGATTTTTGGGGATGCTAAGGTGTTCAAATTTCGGTTTGTATGGTACTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

93

Amino Acids

10.67

Weight (kDa)

9.66

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	1 - 76	4.4e-14	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 151
AcsI	RAATTY	2 cut(s)	95, 253
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	252
AoxI	GGCC	2 cut(s)	3, 177
ApoI	RAATTY	2 cut(s)	95, 253
AspS9I	GGNCC	2 cut(s)	4, 178
AsuHPI	GGTGA	1 cut(s)	88
BbvCI	CCTCAGC	1 cut(s)	65
BccI	CCATC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	4, 178
BmsI	GCATC	3 cut(s)	143, 193, 228
Bpu10I	CCTNAGC	2 cut(s)	65, 242
BpuEI	CTTGAG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	155
BseGI	GGATG	2 cut(s)	147, 243
BseMII	CTCAG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	5, 179
BsiSI	CCGG	1 cut(s)	156
BsnI	GGCC	2 cut(s)	5, 179
BspACI	CCGC	2 cut(s)	72, 151
BspANI	GGCC	2 cut(s)	5, 179
BspCNI	CTCAG	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	65, 188, 242
BstF5I	GGATG	2 cut(s)	147, 243
BstNSI	RCATGY	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	5, 179
BtsCI	GGATG	2 cut(s)	147, 243
Cfr13I	GGNCC	2 cut(s)	4, 178
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	5 cut(s)	5, 13, 64, 122, 179
CviKI_1	RGCY	5 cut(s)	5, 13, 64, 122, 179
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	3 cut(s)	65, 188, 242
Eco57I	CTGAAG	1 cut(s)	29
FaeI	CATG	1 cut(s)	208
FaiI	YATR	5 cut(s)	36, 174, 176, 206, 267
FatI	CATG	1 cut(s)	204
FauI	CCCGC	1 cut(s)	65
FokI	GGATG	2 cut(s)	154, 250
HaeIII	GGCC	2 cut(s)	5, 179
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	208
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	50, 104
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	193, 229
HpyCH4V	TGCA	1 cut(s)	184
HpyF3I	CTNAG	3 cut(s)	65, 188, 242
Hsp92II	CATG	1 cut(s)	208
LpnPI	CCDG	5 cut(s)	20, 46, 117, 169, 194
LweI	GCATC	3 cut(s)	143, 193, 228
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	2 cut(s)	95, 253
MnlI	CCTC	2 cut(s)	57, 60
MseI	TTAA	2 cut(s)	21, 93
MspI	CCGG	1 cut(s)	156
NlaIII	CATG	1 cut(s)	208
NspI	RCATGY	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	4, 178
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	21, 93
Sau96I	GGNCC	2 cut(s)	4, 178
SetI	ASST	3 cut(s)	71, 194, 248
SfaNI	GCATC	3 cut(s)	143, 193, 228
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	2 cut(s)	95, 253
SsiI	CCGC	2 cut(s)	72, 151
TasI	AATT	2 cut(s)	95, 253
Tru1I	TTAA	2 cut(s)	21, 93
Tru9I	TTAA	2 cut(s)	21, 93
XapI	RAATTY	2 cut(s)	95, 253
XceI	RCATGY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.