Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006382.1

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Forward (+)

52320 .. 54692

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006382.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgattacatttgtttgttgcagttgggcatcagatgttgaactctctggcagtatacctaacttcataggaaattggtcaaagcttacttccttgaggtttcaaggaaactcctttgaaggtcctataccatctgcactttccaatctgacttctctgacagagctgtatataactgacttatctactaccaatgggagctcttctcttcggtttattaaggatatgaagtctctatctgtcttagtgctaagaaataacaacatttctgattcaattccttccaacattggagaataccaaagtttatctcagctggacttgagcttcaacaatctaactggacaaataccagactcactgtttaatttgagttctctttccatcctgtttcttggaaacaataagttgaatggtactctacctgaatctaaaagctcatctcttctcaatgtagatttatcatacaataatctagttgggagcattccttcttgggtcaacggaacgagtttacagctatttcaatcaccatttaatctggtctgtcgatttcaagtgtataatggccgagatcggatcaacgatctagaaacctctagaaaatttcagaacttgagacctgtctcgggtattcgcaacaggacccgatcctcacttccaatttcggccatctccaagggtcggaataccagtgttctaactgcatcgtcgttgcgaccaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

26.6

Weight (kDa)

9.51

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	587, 645
AcoI	YGGCCR	2 cut(s)	568, 669
AcsI	RAATTY	1 cut(s)	605
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	2 cut(s)	629, 684
AgsI	TTSAA	8 cut(s)	41, 104, 119, 276, 331, 412, 527, 557
AluBI	AGCT	7 cut(s)	85, 166, 201, 316, 327, 438, 520
AluI	AGCT	7 cut(s)	85, 166, 201, 316, 327, 438, 520
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	3 cut(s)	237, 613, 631
AlwI	GGATC	2 cut(s)	587, 645
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	2 cut(s)	568, 669
ApoI	RAATTY	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	122, 645
AsuHPI	GGTGA	1 cut(s)	522
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	122, 645
BanII	GRGCYC	1 cut(s)	203
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	3 cut(s)	139, 392, 680
BcoDI	GTCTC	3 cut(s)	237, 613, 631
BfaI	CTAG	3 cut(s)	476, 590, 600
Bme18I	GGWCC	2 cut(s)	122, 645
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	122, 645
BmiI	GGNNCC	1 cut(s)	647
BmsI	GCATC	2 cut(s)	38, 716
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpuEI	CTTGAG	3 cut(s)	115, 343, 637
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	2 cut(s)	629, 684
Bse1I	ACTGG	2 cut(s)	346, 693
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	629, 684
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	346, 693
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	570, 671
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	628
BslI	CCNNNNNNNGG	2 cut(s)	629, 684
BsmAI	GTCTC	3 cut(s)	237, 613, 631
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	570, 671
Bso31I	GGTCTC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	574, 579, 586, 650
BspANI	GGCC	2 cut(s)	570, 671
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	647
BspPI	GGATC	2 cut(s)	587, 645
BspQI	GCTCTTC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	346, 693
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	4 cut(s)	574, 579, 586, 650
BssNAI	GTATAC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	678
Bst1107I	GTATAC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	3 cut(s)	208, 213, 450
BstDEI	CTNAG	3 cut(s)	244, 251, 312
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	4 cut(s)	577, 582, 589, 653
BstMAI	GTCTC	3 cut(s)	237, 613, 631
BstMBI	GATC	4 cut(s)	574, 579, 586, 650
BstZ17I	GTATAC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	570, 671
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	359, 700
Cfr13I	GGNCC	2 cut(s)	122, 645
Csp6I	GTAC	1 cut(s)	417
CviJI	RGCY	9 cut(s)	85, 166, 201, 316, 327, 438, 520, 570, 671
CviKI_1	RGCY	9 cut(s)	85, 166, 201, 316, 327, 438, 520, 570, 671
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	3 cut(s)	244, 251, 312
DpnI	GATC	4 cut(s)	576, 581, 588, 652
DpnII	GATC	4 cut(s)	574, 579, 586, 650
EaeI	YGGCCR	2 cut(s)	568, 669
Eam1104I	CTCTTC	3 cut(s)	208, 213, 450
EarI	CTCTTC	3 cut(s)	208, 213, 450
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	613
Eco47I	GGWCC	2 cut(s)	122, 645
Eco53kI	GAGCTC	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	122, 645
EcoT14I	CCWWGG	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	678
FaiI	YATR	8 cut(s)	56, 68, 128, 171, 173, 227, 466, 564
FblI	GTMKAC	1 cut(s)	55
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	203
FspBI	CTAG	3 cut(s)	476, 590, 600
HaeIII	GGCC	2 cut(s)	570, 671
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	272, 356, 428
HphI	GGTGA	1 cut(s)	522
Hpy166II	GTNNAC	3 cut(s)	56, 502, 515
Hpy188I	TCNGA	7 cut(s)	34, 150, 159, 271, 579, 612, 687
Hpy188III	TCNNGA	2 cut(s)	590, 600
Hpy8I	GTNNAC	3 cut(s)	56, 502, 515
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	3 cut(s)	113, 291, 501
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	21, 137, 707
HpyF3I	CTNAG	3 cut(s)	244, 251, 312
Kzo9I	GATC	4 cut(s)	574, 579, 586, 650
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	198, 483
LweI	GCATC	2 cut(s)	38, 716
MaeI	CTAG	3 cut(s)	476, 590, 600
MalI	GATC	4 cut(s)	576, 581, 588, 652
MboI	GATC	4 cut(s)	574, 579, 586, 650
MboII	GAAGA	3 cut(s)	195, 200, 437
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	73, 276, 367, 605, 663
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	309, 665
MnlI	CCTC	3 cut(s)	90, 607, 664
MseI	TTAA	3 cut(s)	219, 366, 537
MspA1I	CMGCKG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	486
NdeII	GATC	4 cut(s)	574, 579, 586, 650
NlaIV	GGNNCC	1 cut(s)	647
NmeAIII	GCCGAG	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	272, 428
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	2 cut(s)	122, 645
Psp124BI	GAGCTC	1 cut(s)	203
Psp5II	RGGWCCY	2 cut(s)	122, 645
PspN4I	GGNNCC	1 cut(s)	647
PspPI	GGNCC	2 cut(s)	122, 645
PspPPI	RGGWCCY	2 cut(s)	122, 645
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	3 cut(s)	219, 366, 537
Sau3AI	GATC	4 cut(s)	574, 579, 586, 650
Sau96I	GGNCC	2 cut(s)	122, 645
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	2 cut(s)	38, 716
SinI	GGWCC	2 cut(s)	122, 645
SmlI	CTYRAG	3 cut(s)	94, 322, 616
SmoI	CTYRAG	3 cut(s)	94, 322, 616
Sse9I	AATT	5 cut(s)	73, 276, 367, 605, 663
SspMI	CTAG	3 cut(s)	476, 590, 600
SstI	GAGCTC	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	550
TasI	AATT	5 cut(s)	73, 276, 367, 605, 663
TfiI	GAWTC	2 cut(s)	272, 428
Tru1I	TTAA	3 cut(s)	219, 366, 537
Tru9I	TTAA	3 cut(s)	219, 366, 537
TscAI	CASTG	2 cut(s)	366, 700
TspDTI	ATGAA	2 cut(s)	55, 242
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	2 cut(s)	366, 700
VpaK11BI	GGWCC	2 cut(s)	122, 645
XapI	RAATTY	1 cut(s)	605
XbaI	TCTAGA	2 cut(s)	589, 599
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	3 cut(s)	476, 590, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.