Rroxscaffold_1G00049060

GDP-fucose protein O-fucosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
69235535 .. 69248058
12524 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00049060.1

Sequence Viewer

Length: 321 bp
ATGGCTGATTTATTGGCATCAGGGATGAGAAACCACACCGGAAGTTCCAATCCTTATATGGCCCTGCATCTTAGGTTTGAGAAGGGGATGGTCAGGTTGAAGAGATACTTGGAGATGACGGGTGCTGATGGAGGACTGGCCTTGGAGAAGCTTATGTGCTTTGCTTGCATTTTGGGTAATAAGCTAAGCTACTGCAACCTTCTCTTTCCAGATCGCTTTGCTTGCATTTCAATCGGATATGGCATGGAGGCCATCTACTTTGATGAAGGTGTAAGGAACTCAAGACGACACCAATTGGAAATAAGAGCATTGGATGTATGA

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

8.41

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 100, 231
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 151, 184, 189
AluI AGCT 3 cut(s) 151, 184, 189
AoxI GGCC 3 cut(s) 60, 138, 249
AspS9I GGNCC 1 cut(s) 61
BccI CCATC 3 cut(s) 82, 122, 260
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BlpI GCTNAGC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 61
BmsI GCATC 2 cut(s) 26, 76
Bpu1102I GCTNAGC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 30, 93, 319
BseNI ACTGG 1 cut(s) 141
BshFI GGCC 3 cut(s) 62, 140, 251
BsiSI CCGG 1 cut(s) 39
BsnI GGCC 3 cut(s) 62, 140, 251
Bsp143I GATC 1 cut(s) 211
Bsp1720I GCTNAGC 1 cut(s) 185
BspANI GGCC 3 cut(s) 62, 140, 251
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 166, 223
BstDEI CTNAG 2 cut(s) 71, 185
BstF5I GGATG 3 cut(s) 30, 93, 319
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 165, 222
BsuRI GGCC 3 cut(s) 62, 140, 251
BtsCI GGATG 3 cut(s) 30, 93, 319
Cac8I GCNNGC 2 cut(s) 166, 223
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 1 cut(s) 244
CviJI RGCY 7 cut(s) 5, 62, 140, 151, 184, 189, 251
CviKI_1 RGCY 7 cut(s) 5, 62, 140, 151, 184, 189, 251
DdeI CTNAG 2 cut(s) 71, 185
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 247
FaiI YATR 6 cut(s) 57, 59, 155, 240, 245, 319
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 1 cut(s) 243
FokI GGATG 2 cut(s) 37, 100
HaeIII GGCC 3 cut(s) 62, 140, 251
HapII CCGG 1 cut(s) 39
Hin1II CATG 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 149
HpaII CCGG 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 2 cut(s) 209, 282
HpyAV CCTTC 3 cut(s) 76, 209, 260
HpyCH4V TGCA 4 cut(s) 67, 168, 195, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 222
HpyF3I CTNAG 2 cut(s) 71, 185
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 6 cut(s) 6, 52, 77, 79, 122, 222
LweI GCATC 2 cut(s) 26, 76
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 112
MfeI CAATTG 1 cut(s) 293
MluCI AATT 1 cut(s) 293
MnlI CCTC 2 cut(s) 125, 241
MspI CCGG 1 cut(s) 39
MunI CAATTG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 165, 222
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 247
PspPI GGNCC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 61
SetI ASST 7 cut(s) 77, 98, 153, 186, 191, 201, 271
SfaNI GCATC 2 cut(s) 26, 76
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 1 cut(s) 293
StyI CCWWGG 1 cut(s) 141
TasI AATT 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.