Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Reverse (-)

38932960 .. 38950554

Gene Structure 17595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG322800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCCCTGAAGTCTTTTGTTAATCAACTTGGGTATGTCAATGTTCCTCAAGAAATCAACAGGCTGAGGTGCGGGGTGAACTATCACGCTCTTAAATTTCTTCCTGAAATAGAGCAGATGGCTGATTTATTGGCATCAAGGATGAGAAACCGCACCGGAAGTTCCAATCCTTATATGGTCCTGCATCTTAGGTTTGAGAACGGCATGGTAGATCTATCCTTCTGTGATTTTTTGGGGATGCTAAGGTCAGACACTTATTTTTCTGAATATGGCATGGAGGCCATCTATTTTGATGAAGGTGCAAGGAACTCAAGAGCACACCAACTGGAAACAAGAGCATTGGATCGAATTGTTGGAACATCAAGTCAACTTGAAAATGTAGATGCATCTGAACACAGTGAGAATGAAGTTAGGGGTGGTGATGAAAATACCATTGCAGGTGTAAATGCATTTGACGCTGCAGAGATTACACGAAGTAGCACGATGAGAAGAATGAAAAGATTGTTACAACAATGTGCTACTGAAAATTATGAAATTGGAGGGACAGTTGACCAAGGAAGAGCTGAATCCAATTGCATGTTGAGAATGAAGACATTGTCAGACCAGTCTGCTGTTGAAAATTCTGAAAGTGGAAACAAAGTTCATCAACGAAGAAGTGAATTTAATCCTGTGAGATCTAAGAGGTGGAGAAGAATGTTTGATTCACACATTGGTGAAGGATCAAGTCAACGTCAAAATCTGGATGCAGCTGAATATAGTGATGATCAATTTACAAGCGATCATTTACAAAATATTGTTATTGAGGAGGCAGAGGTGGCATCAAACAGGATGACAAGGAGAATGAGCAGATTGTTACGGCATGGTTGTGCTGAAAATTACAGAATTGGAGAAACAATTGAGCAAGGAAGAATTGAATCTAATCCGTCTTCCGGAAGTCTCCATTTAAGTCGACATCAGGTTCTCCATTGTTTGACGTCTCCCATCAACGTGAATCTCCATAGAAACTGGATAAGGACACAATTGTTTTCGGACTTGGCTGCAGCACATGAATCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

352

Amino Acids

40.06

Weight (kDa)

6.13

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	2 - 98	1.9e-13	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	428
AatII	GACGTC	1 cut(s)	977
Acc36I	ACCTGC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	949
AccIII	TCCGGA	1 cut(s)	929
AciI	CCGC	2 cut(s)	72, 151
AclWI	GGATC	2 cut(s)	351, 727
AcsI	RAATTY	3 cut(s)	95, 619, 659
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	974
AfiI	CCNNNNNNNGG	1 cut(s)	929
AgsI	TTSAA	3 cut(s)	374, 617, 914
AleI	CACNNNNGTG	1 cut(s)	711
AloI	GAACNNNNNNTCC	2 cut(s)	624, 656
AluBI	AGCT	2 cut(s)	563, 749
AluI	AGCT	2 cut(s)	563, 749
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	941, 981
AlwI	GGATC	2 cut(s)	351, 727
Aor13HI	TCCGGA	1 cut(s)	929
AoxI	GGCC	2 cut(s)	3, 279
ApeKI	GCWGC	4 cut(s)	458, 746, 1037, 1040
ApoI	RAATTY	3 cut(s)	95, 619, 659
AspS9I	GGNCC	2 cut(s)	4, 178
AsuHPI	GGTGA	3 cut(s)	88, 431, 725
AvaII	GGWCC	1 cut(s)	178
BbsI	GAAGAC	2 cut(s)	596, 918
Bbv12I	GWGCWC	1 cut(s)	319
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	445, 758, 1024, 1052
BccI	CCATC	3 cut(s)	112, 290, 989
BceAI	ACGGC	2 cut(s)	217, 872
BclI	TGATCA	1 cut(s)	763
BcoDI	GTCTC	2 cut(s)	941, 981
BfmI	CTRYAG	2 cut(s)	459, 1038
BfuAI	ACCTGC	1 cut(s)	428
BglII	AGATCT	2 cut(s)	211, 674
BisI	GCNGC	4 cut(s)	459, 747, 1038, 1041
BlsI	GCNGC	4 cut(s)	460, 748, 1039, 1042
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	4, 178
BmsI	GCATC	7 cut(s)	143, 193, 228, 373, 395, 733, 827
BpiI	GAAGAC	2 cut(s)	596, 918
Bpu10I	CCTNAGC	2 cut(s)	65, 242
BpuEI	CTTGAG	2 cut(s)	33, 295
BsaHI	GRCGYC	1 cut(s)	974
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	2 cut(s)	155, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	3 cut(s)	330, 604, 1010
Bse3DI	GCAATG	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	929
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	4 cut(s)	147, 243, 748, 834
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	3 cut(s)	330, 604, 1010
BseRI	GAGGAG	1 cut(s)	818
BseXI	GCAGC	4 cut(s)	445, 758, 1024, 1052
BshFI	GGCC	2 cut(s)	5, 281
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	156, 930
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	2 cut(s)	941, 981
BsmBI	CGTCTC	1 cut(s)	981
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	5, 281
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp13I	TCCGGA	1 cut(s)	929
Bsp143I	GATC	6 cut(s)	211, 343, 674, 719, 763, 778
BspACI	CCGC	2 cut(s)	72, 151
BspANI	GGCC	2 cut(s)	5, 281
BspCNI	CTCAG	1 cut(s)	57
BspEI	TCCGGA	1 cut(s)	929
BspMAI	CTGCAG	2 cut(s)	463, 1042
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	351, 727
BspQI	GCTCTTC	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	330, 604, 1010
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	6 cut(s)	211, 343, 674, 719, 763, 778
BssNI	GRCGYC	1 cut(s)	974
BssT1I	CCWWGG	1 cut(s)	553
Bst4CI	ACNGT	2 cut(s)	398, 547
Bst6I	CTCTTC	1 cut(s)	553
BstACI	GRCGYC	1 cut(s)	974
BstDEI	CTNAG	4 cut(s)	65, 188, 242, 678
BstF5I	GGATG	4 cut(s)	147, 243, 748, 834
BstKTI	GATC	6 cut(s)	214, 346, 677, 722, 766, 781
BstMAI	GTCTC	2 cut(s)	941, 981
BstMBI	GATC	6 cut(s)	211, 343, 674, 719, 763, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 815
BstNSI	RCATGY	1 cut(s)	580
BstSFI	CTRYAG	2 cut(s)	459, 1038
BstV1I	GCAGC	4 cut(s)	445, 758, 1024, 1052
BstV2I	GAAGAC	2 cut(s)	596, 918
BstX2I	RGATCY	2 cut(s)	211, 674
BstYI	RGATCY	2 cut(s)	211, 674
BsuRI	GGCC	2 cut(s)	5, 281
BtsCI	GGATG	4 cut(s)	147, 243, 748, 834
BtsIMutI	CAGTG	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	4, 178
CseI	GACGC	1 cut(s)	464
CviAII	CATG	5 cut(s)	205, 274, 577, 860, 1046
CviJI	RGCY	7 cut(s)	5, 64, 122, 281, 563, 749, 1037
CviKI_1	RGCY	7 cut(s)	5, 64, 122, 281, 563, 749, 1037
DdeI	CTNAG	4 cut(s)	65, 188, 242, 678
DpnI	GATC	6 cut(s)	213, 345, 676, 721, 765, 780
DpnII	GATC	6 cut(s)	211, 343, 674, 719, 763, 778
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	553
EcoT22I	ATGCAT	2 cut(s)	388, 451
ErhI	CCWWGG	1 cut(s)	553
Esp3I	CGTCTC	1 cut(s)	981
FaeI	CATG	5 cut(s)	208, 277, 580, 863, 1049
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	5 cut(s)	204, 273, 576, 859, 1045
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	949
Fnu4HI	GCNGC	4 cut(s)	459, 747, 1038, 1041
FokI	GGATG	4 cut(s)	154, 250, 755, 841
Fsp4HI	GCNGC	4 cut(s)	459, 747, 1038, 1041
GluI	GCNGC	4 cut(s)	459, 747, 1038, 1041
HaeIII	GGCC	2 cut(s)	5, 281
HapII	CCGG	2 cut(s)	156, 930
HgaI	GACGC	1 cut(s)	464
Hin1I	GRCGYC	1 cut(s)	974
Hin1II	CATG	5 cut(s)	208, 277, 580, 863, 1049
HincII	GTYRAC	4 cut(s)	368, 550, 728, 950
HindII	GTYRAC	4 cut(s)	368, 550, 728, 950
HinfI	GANTC	5 cut(s)	566, 701, 914, 991, 1049
HpaII	CCGG	2 cut(s)	156, 930
HphI	GGTGA	3 cut(s)	88, 431, 725
Hpy166II	GTNNAC	5 cut(s)	79, 368, 550, 728, 950
Hpy188I	TCNGA	6 cut(s)	250, 265, 391, 601, 625, 1030
Hpy188III	TCNNGA	6 cut(s)	50, 104, 312, 740, 930, 1056
Hpy8I	GTNNAC	5 cut(s)	79, 368, 550, 728, 950
HpyAV	CCTTC	3 cut(s)	229, 290, 710
HpyCH4III	ACNGT	2 cut(s)	398, 547
HpyCH4IV	ACGT	3 cut(s)	730, 974, 987
HpyCH4V	TGCA	9 cut(s)	184, 302, 386, 437, 449, 461, 576, 746, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 815
HpyF3I	CTNAG	4 cut(s)	65, 188, 242, 678
HpySE526I	ACGT	3 cut(s)	730, 974, 987
Hsp92I	GRCGYC	1 cut(s)	974
Hsp92II	CATG	5 cut(s)	208, 277, 580, 863, 1049
Kpn2I	TCCGGA	1 cut(s)	929
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	6 cut(s)	211, 343, 674, 719, 763, 778
LguI	GCTCTTC	1 cut(s)	553
Lsp1109I	GCAGC	4 cut(s)	445, 758, 1024, 1052
LweI	GCATC	7 cut(s)	143, 193, 228, 373, 395, 733, 827
MaeII	ACGT	3 cut(s)	730, 974, 987
MaeIII	GTNAC	2 cut(s)	504, 852
MalI	GATC	6 cut(s)	213, 345, 676, 721, 765, 780
MboI	GATC	6 cut(s)	211, 343, 674, 719, 763, 778
MboII	GAAGA	8 cut(s)	92, 501, 570, 601, 663, 702, 918, 918
MfeI	CAATTG	3 cut(s)	571, 894, 1019
MflI	RGATCY	2 cut(s)	211, 674
MhlI	GDGCHC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	8 cut(s)	57, 60, 271, 533, 675, 796, 799, 805
Mph1103I	ATGCAT	2 cut(s)	388, 451
MroI	TCCGGA	1 cut(s)	929
MseI	TTAA	4 cut(s)	21, 93, 663, 944
MslI	CAYNNNNRTG	3 cut(s)	711, 864, 986
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	2 cut(s)	156, 930
MunI	CAATTG	3 cut(s)	571, 894, 1019
MwoI	GCNNNNNNNGC	2 cut(s)	455, 815
NdeII	GATC	6 cut(s)	211, 343, 674, 719, 763, 778
NlaIII	CATG	5 cut(s)	208, 277, 580, 863, 1049
NsiI	ATGCAT	2 cut(s)	388, 451
NspI	RCATGY	1 cut(s)	580
OliI	CACNNNNGTG	1 cut(s)	711
PaqCI	CACCTGC	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	553
PfeI	GAWTC	5 cut(s)	566, 701, 914, 991, 1049
PflFI	GACNNNGTC	1 cut(s)	595
PkrI	GCNGC	4 cut(s)	460, 748, 1039, 1042
PspPI	GGNCC	2 cut(s)	4, 178
PstI	CTGCAG	2 cut(s)	463, 1042
PsuI	RGATCY	2 cut(s)	211, 674
PsyI	GACNNNGTC	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	749
RseI	CAYNNNNRTG	3 cut(s)	711, 864, 986
SalI	GTCGAC	1 cut(s)	948
SapI	GCTCTTC	1 cut(s)	553
SaqAI	TTAA	4 cut(s)	21, 93, 663, 944
SatI	GCNGC	4 cut(s)	459, 747, 1038, 1041
Sau3AI	GATC	6 cut(s)	211, 343, 674, 719, 763, 778
Sau96I	GGNCC	2 cut(s)	4, 178
SduI	GDGCHC	1 cut(s)	319
SfaNI	GCATC	7 cut(s)	143, 193, 228, 373, 395, 733, 827
SfcI	CTRYAG	2 cut(s)	459, 1038
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	3 cut(s)	711, 864, 986
SmlI	CTYRAG	2 cut(s)	48, 310
SmoI	CTYRAG	2 cut(s)	48, 310
SsiI	CCGC	2 cut(s)	72, 151
SspI	AATATT	1 cut(s)	793
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	2 cut(s)	398, 547
TaiI	ACGT	3 cut(s)	733, 977, 990
TaqI	TCGA	2 cut(s)	346, 949
TfiI	GAWTC	5 cut(s)	566, 701, 914, 991, 1049
Tru1I	TTAA	4 cut(s)	21, 93, 663, 944
Tru9I	TTAA	4 cut(s)	21, 93, 663, 944
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	4 cut(s)	458, 746, 1037, 1040
TspDTI	ATGAA	7 cut(s)	309, 420, 438, 509, 546, 602, 632
TspGWI	ACGGA	1 cut(s)	912
TspRI	CASTG	1 cut(s)	403
Tth111I	GACNNNGTC	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	3 cut(s)	95, 619, 659
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	949
ZraI	GACGTC	1 cut(s)	975
Zsp2I	ATGCAT	2 cut(s)	388, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.