Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002983.1

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Forward (+)

62472 .. 69456

Gene Structure 6985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002983.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgggcccactatgcttccctaatgataaaggtaaaagcggtaaaactgcagtagctgatgcttccatcggaatagattcattggaggcttggcaaagagttggcttggttgcttatgttttgaaaagctttatcctgaatgctggtgagtttttattccttccatattggcaaaacattccaaaacttgcaccagcacaattttacatcgacaatgttctagctcgaatcaaggagaagaagataatggccctgaagccttttgttaatcaacttgggtatgtcaatgttcctcaagaaatcaacaggctgaggtgcggggtgaactatcacgctcttaaatttcttcctgaaatagagcagatggctgatttattggcatcagggatgagaaaccgcactggaagttccaatccttatatggccctggatcttaggtttgagaagtggatggtaggtctatccttctatgattttttggggatgctaaggtattcaaatttcggcctatttagaaatgtgactccttacattggagatgctataggaattttacttcatagacttctcagtattataaggaccgtcaggttgaagagatacttggagatgaggggtgctgatggaggaccggccttggagaagcttatgtgctttgcttgcattttgggtaataagctaagctactgcaaccttctctttccagatcgctttgcttgcatttcaatcgggttaaagagatacttggagatgagaggtgctgatggaggaccagccttggagaagcttatgtgctttgcttgcattttgggtaataagctaagctactgcaaccttctctttccagatcgctttgcttgcatttcaattggatatggcatggaggccatctactttgatgaaggtgtaaggaactcaagacgacaccaacttgcagggccggccctgagggctgccgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

320

Amino Acids

35.93

Weight (kDa)

9.3

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AciI	CCGC	4 cut(s)	39, 318, 397, 957
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	3 cut(s)	341, 499, 549
AcuI	CTGAAG	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	124, 498, 595, 726, 867
AjnI	CCWGG	1 cut(s)	426
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
AluBI	AGCT	9 cut(s)	56, 129, 224, 646, 679, 684, 787, 820, 825
AluI	AGCT	9 cut(s)	56, 129, 224, 646, 679, 684, 787, 820, 825
AlwI	GGATC	1 cut(s)	438
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	8 cut(s)	4, 249, 423, 505, 633, 885, 938, 942
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	953
ApoI	RAATTY	3 cut(s)	341, 499, 549
Asp700I	GAANNNNTTC	1 cut(s)	76
AspS9I	GGNCC	9 cut(s)	4, 5, 250, 424, 582, 629, 770, 938, 943
AsuHPI	GGTGA	2 cut(s)	158, 334
AvaII	GGWCC	3 cut(s)	582, 629, 770
AxyI	CCTNAGG	1 cut(s)	947
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	940
BccI	CCATC	6 cut(s)	74, 358, 445, 617, 758, 896
BcgI	CGANNNNNNTGC	2 cut(s)	709, 743
BciT130I	CCWGG	1 cut(s)	428
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	2 cut(s)	48, 543
BglI	GCCNNNNNGGC	1 cut(s)	950
BisI	GCNGC	2 cut(s)	954, 957
BlpI	GCTNAGC	2 cut(s)	680, 821
BlsI	GCNGC	2 cut(s)	955, 958
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	3 cut(s)	582, 629, 770
BmgT120I	GGNCC	9 cut(s)	4, 5, 250, 424, 582, 629, 770, 938, 943
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	4 cut(s)	49, 389, 474, 529
Bpu10I	CCTNAGC	2 cut(s)	311, 488
Bpu1102I	GCTNAGC	2 cut(s)	680, 821
BpuEI	CTTGAG	2 cut(s)	279, 901
BsaJI	CCNNGG	3 cut(s)	426, 636, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse118I	RCCGGY	2 cut(s)	631, 940
Bse1I	ACTGG	1 cut(s)	406
Bse21I	CCTNAGG	1 cut(s)	947
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	3 cut(s)	426, 636, 777
BseGI	GGATG	3 cut(s)	393, 456, 489
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMII	CTCAG	3 cut(s)	302, 583, 938
BseNI	ACTGG	1 cut(s)	406
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	940
BshFI	GGCC	8 cut(s)	6, 251, 425, 507, 635, 887, 940, 944
BsiSI	CCGG	2 cut(s)	632, 941
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	8 cut(s)	6, 251, 425, 507, 635, 887, 940, 944
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	430, 706, 847
Bsp1720I	GCTNAGC	2 cut(s)	680, 821
BspACI	CCGC	4 cut(s)	39, 318, 397, 957
BspANI	GGCC	8 cut(s)	6, 251, 425, 507, 635, 887, 940, 944
BspCNI	CTCAG	3 cut(s)	303, 582, 939
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	1 cut(s)	438
BsrFI	RCCGGY	2 cut(s)	631, 940
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	2 cut(s)	631, 940
BssECI	CCNNGG	3 cut(s)	426, 636, 777
BssMI	GATC	3 cut(s)	430, 706, 847
BssT1I	CCWWGG	2 cut(s)	636, 777
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	590
BstC8I	GCNNGC	5 cut(s)	661, 718, 802, 859, 942
BstDEI	CTNAG	7 cut(s)	311, 434, 488, 569, 680, 821, 947
BstF5I	GGATG	3 cut(s)	393, 456, 489
BstKTI	GATC	3 cut(s)	433, 709, 850
BstMBI	GATC	3 cut(s)	430, 706, 847
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 660, 717, 801, 858, 941, 950
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	2 cut(s)	48, 543
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	940
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	1 cut(s)	947
BsuRI	GGCC	8 cut(s)	6, 251, 425, 507, 635, 887, 940, 944
BtsCI	GGATG	3 cut(s)	393, 456, 489
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	5 cut(s)	661, 718, 802, 859, 942
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr10I	RCCGGY	2 cut(s)	631, 940
Cfr13I	GGNCC	9 cut(s)	4, 5, 250, 424, 582, 629, 770, 938, 943
CviAII	CATG	1 cut(s)	880
DdeI	CTNAG	7 cut(s)	311, 434, 488, 569, 680, 821, 947
DpnI	GATC	3 cut(s)	432, 708, 849
DpnII	GATC	3 cut(s)	430, 706, 847
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
Eco130I	CCWWGG	2 cut(s)	636, 777
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	582, 629, 770
Eco57I	CTGAAG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	947
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	636, 777
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	636, 777
FaeI	CATG	1 cut(s)	883
FalI	AAGNNNNNCTT	4 cut(s)	587, 619, 728, 760
FatI	CATG	1 cut(s)	879
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	2 cut(s)	954, 957
FokI	GGATG	3 cut(s)	400, 463, 496
FriOI	GRGCYC	1 cut(s)	8
FseI	GGCCGGCC	1 cut(s)	944
Fsp4HI	GCNGC	2 cut(s)	954, 957
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	954, 957
HaeIII	GGCC	8 cut(s)	6, 251, 425, 507, 635, 887, 940, 944
HapII	CCGG	2 cut(s)	632, 941
Hin1II	CATG	1 cut(s)	883
HindIII	AAGCTT	3 cut(s)	127, 644, 785
HinfI	GANTC	3 cut(s)	77, 228, 523
HpaII	CCGG	2 cut(s)	632, 941
HphI	GGTGA	2 cut(s)	158, 334
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	6 cut(s)	136, 296, 350, 704, 845, 918
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	5 cut(s)	170, 475, 704, 845, 896
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	9 cut(s)	50, 191, 663, 690, 720, 804, 831, 861, 935
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 660, 717, 801, 858, 941, 950
HpyF3I	CTNAG	7 cut(s)	311, 434, 488, 569, 680, 821, 947
Hsp92II	CATG	1 cut(s)	883
KroI	GCCGGC	1 cut(s)	940
KroNI	GCCGGC	1 cut(s)	942
Kzo9I	GATC	3 cut(s)	430, 706, 847
Lsp1109I	GCAGC	1 cut(s)	940
LweI	GCATC	4 cut(s)	49, 389, 474, 529
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	3 cut(s)	432, 708, 849
MboI	GATC	3 cut(s)	430, 706, 847
MboII	GAAGA	4 cut(s)	250, 253, 338, 607
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	200, 341, 499, 549, 867
MlyI	GAGTC	1 cut(s)	517
MnlI	CCTC	9 cut(s)	79, 303, 306, 606, 620, 749, 761, 877, 942
MroNI	GCCGGC	1 cut(s)	940
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	3 cut(s)	267, 339, 734
MspI	CCGG	2 cut(s)	632, 941
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	7 cut(s)	12, 660, 717, 801, 858, 941, 950
NaeI	GCCGGC	1 cut(s)	942
NdeII	GATC	3 cut(s)	430, 706, 847
NgoMIV	GCCGGC	1 cut(s)	940
NlaIII	CATG	1 cut(s)	883
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	520
PctI	GAATGC	1 cut(s)	145
PdiI	GCCGGC	1 cut(s)	942
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	77, 228
PkrI	GCNGC	2 cut(s)	955, 958
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	6
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	9 cut(s)	4, 5, 250, 424, 582, 629, 770, 938, 943
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	430
RigI	GGCCGGCC	1 cut(s)	944
SaqAI	TTAA	3 cut(s)	267, 339, 734
SatI	GCNGC	2 cut(s)	954, 957
Sau3AI	GATC	3 cut(s)	430, 706, 847
Sau96I	GGNCC	9 cut(s)	4, 5, 250, 424, 582, 629, 770, 938, 943
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	4 cut(s)	49, 389, 474, 529
SfcI	CTRYAG	2 cut(s)	48, 543
SinI	GGWCC	3 cut(s)	582, 629, 770
SmlI	CTYRAG	2 cut(s)	294, 916
SmoI	CTYRAG	2 cut(s)	294, 916
Sse9I	AATT	5 cut(s)	200, 341, 499, 549, 867
SsiI	CCGC	4 cut(s)	39, 318, 397, 957
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	636, 777
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	210, 226
TasI	AATT	5 cut(s)	200, 341, 499, 549, 867
TauI	GCSGC	1 cut(s)	959
TfiI	GAWTC	2 cut(s)	77, 228
Tru1I	TTAA	3 cut(s)	267, 339, 734
Tru9I	TTAA	3 cut(s)	267, 339, 734
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	1 cut(s)	953
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	69, 548, 915
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	3 cut(s)	582, 629, 770
XapI	RAATTY	3 cut(s)	341, 499, 549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.