Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Reverse (-)

49886426 .. 49905221

Gene Structure 18796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG341400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATTCAGCTGACCCGCTATTCACAGCTCCGCCAACCGCTATCTTCATGCCCTTCAATCATCAAACATTGCCAAAGTCTTTGGTGCAGAGATGTACTCTATGAAGCAACTCTCAACTTGCAGCGGCAAAACATTCCAAAACATGCACTAGCACAATTTTACATCGACAATGTTCTGGCTCGAATCAAGGAGAAGAAGATAATGGCCCTGAAGCCTTTTGTTAATCAACTTGGGTATGTCAATGTTCCTCAAGAAATCAATAGGCTGAGGTGCGGGGTGAACTATCACGCTCTTAAATTTCTTCCTAAAATAGAGCAGATGGCTGATTTATTGGCATCAGGGATGAGAAACCGCACCGGAAGTTCCAATCCTTATATGGCCCTGCATCTTAGGTTTGAGAAGGGGATGGTCAGGTTGAAGAGATACTTGGAGATGACGGGTGCTGATGGAGGACCGGCCTTGGAGAAGCTTATGTGCTTTGCTTGCATTTTGGGTAATAAGCTAAGCTACTGCAACCTTCTCTTTCCAGATCGCTTTGCTTGCATTTCAATCGGGTACTTTTGCTTTTGTTCTTTAATTTTTGCTACTTTTATTCGATCGGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

202

Amino Acids

23.26

Weight (kDa)

9.43

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	42 - 138	4.4e-19	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	16, 31, 38, 124, 273, 352
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	96, 557
AgsI	TTSAA	3 cut(s)	57, 418, 549
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	10, 28, 469, 502, 507
AluI	AGCT	5 cut(s)	10, 28, 469, 502, 507
AoxI	GGCC	3 cut(s)	204, 378, 456
ApeKI	GCWGC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	205, 379, 452
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	3 cut(s)	313, 400, 440
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	122, 125
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	2 cut(s)	123, 126
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	3 cut(s)	205, 379, 452
BmsI	GCATC	2 cut(s)	344, 394
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	356
Bse118I	RCCGGY	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	2 cut(s)	348, 411
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	3 cut(s)	206, 380, 458
BsiEI	CGRYCG	1 cut(s)	599
BsiSI	CCGG	2 cut(s)	357, 455
BsnI	GGCC	3 cut(s)	206, 380, 458
Bsp143I	GATC	2 cut(s)	529, 596
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	6 cut(s)	16, 31, 38, 124, 273, 352
BspANI	GGCC	3 cut(s)	206, 380, 458
BspCNI	CTCAG	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	529, 596
BssT1I	CCWWGG	1 cut(s)	459
Bst6I	CTCTTC	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	484, 541
BstDEI	CTNAG	3 cut(s)	266, 389, 503
BstF5I	GGATG	2 cut(s)	348, 411
BstKTI	GATC	2 cut(s)	532, 599
BstMBI	GATC	2 cut(s)	529, 596
BstMCI	CGRYCG	1 cut(s)	599
BstMWI	GCNNNNNNNGC	2 cut(s)	483, 540
BstNSI	RCATGY	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	206, 380, 458
BtsCI	GGATG	2 cut(s)	348, 411
Cac8I	GCNNGC	2 cut(s)	484, 541
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	205, 379, 452
Csp6I	GTAC	2 cut(s)	95, 556
CviAII	CATG	2 cut(s)	48, 143
CviQI	GTAC	2 cut(s)	95, 556
DdeI	CTNAG	3 cut(s)	266, 389, 503
DpnI	GATC	2 cut(s)	531, 598
DpnII	GATC	2 cut(s)	529, 596
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	2 cut(s)	51, 146
FaiI	YATR	7 cut(s)	49, 102, 144, 237, 375, 377, 473
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	2 cut(s)	47, 142
FauI	CCCGC	2 cut(s)	23, 266
Fnu4HI	GCNGC	2 cut(s)	122, 125
FokI	GGATG	2 cut(s)	355, 418
Fsp4HI	GCNGC	2 cut(s)	122, 125
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	2 cut(s)	122, 125
HaeIII	GGCC	3 cut(s)	206, 380, 458
HapII	CCGG	2 cut(s)	357, 455
Hin1II	CATG	2 cut(s)	51, 146
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	4, 183
HpaII	CCGG	2 cut(s)	357, 455
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	601
Hpy188III	TCNNGA	2 cut(s)	251, 527
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	63, 394, 527
HpyCH4V	TGCA	7 cut(s)	87, 121, 146, 385, 486, 513, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	483, 540
HpyF3I	CTNAG	3 cut(s)	266, 389, 503
Hsp92II	CATG	2 cut(s)	51, 146
Kzo9I	GATC	2 cut(s)	529, 596
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	8 cut(s)	161, 221, 324, 370, 395, 397, 468, 540
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	2 cut(s)	344, 394
MaeI	CTAG	1 cut(s)	149
MalI	GATC	2 cut(s)	531, 598
MboI	GATC	2 cut(s)	529, 596
MboII	GAAGA	5 cut(s)	36, 205, 208, 293, 430
MluCI	AATT	3 cut(s)	155, 296, 576
MnlI	CCTC	3 cut(s)	258, 261, 443
MseI	TTAA	3 cut(s)	222, 294, 575
MspA1I	CMGCKG	2 cut(s)	10, 124
MspI	CCGG	2 cut(s)	357, 455
MwoI	GCNNNNNNNGC	2 cut(s)	483, 540
NdeII	GATC	2 cut(s)	529, 596
NlaIII	CATG	2 cut(s)	51, 146
NspI	RCATGY	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	4, 183
PkrI	GCNGC	2 cut(s)	123, 126
Ple19I	CGATCG	1 cut(s)	599
PspPI	GGNCC	3 cut(s)	205, 379, 452
PvuI	CGATCG	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	2 cut(s)	96, 557
RsaNI	GTAC	2 cut(s)	95, 556
SaqAI	TTAA	3 cut(s)	222, 294, 575
SatI	GCNGC	2 cut(s)	122, 125
Sau3AI	GATC	2 cut(s)	529, 596
Sau96I	GGNCC	3 cut(s)	205, 379, 452
SetI	ASST	9 cut(s)	12, 30, 272, 395, 416, 471, 504, 509, 519
SfaNI	GCATC	2 cut(s)	344, 394
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	155, 296, 576
SsiI	CCGC	6 cut(s)	16, 31, 38, 124, 273, 352
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	459
TaqI	TCGA	3 cut(s)	165, 181, 595
TasI	AATT	3 cut(s)	155, 296, 576
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	2 cut(s)	4, 183
Tru1I	TTAA	3 cut(s)	222, 294, 575
Tru9I	TTAA	3 cut(s)	222, 294, 575
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	36, 117
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.