Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Reverse (-)

30457590 .. 30461548

Gene Structure 3959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAAATTCTGCCCCGCAGCAACGCGCGGGAAATATTTAGAGTTATACTATATATGAAAGATGAGTTAACTGGTCACACCTGTTCATGTAACAGTAAAATGACGGTTTTGCCCTTGCCTTTTTCTCACAGTTTCACGCTGCCATTGACCGAGCTTGGTTGCTTATGTTTTGAAAAGCTTTATCCTGAATGCTGGCAAAACATTCCAAAACATGCACCAGCACAATTTTACATCGACAATGTTCTGGCTCGAATCAAGGAGAAGAAGAAAATGGCCCTGAAGCCTTTTGTTAATCAACTTGGGTATGTCAATGTTCCTCAAGAAATCAACAGGCTGAGGTGCGGGGTGAACTATCACGCTCTTAAATTTCTTCCTGAAATAGAGCAGATGGCTGATTTATTGGCATCAGGGATGAGAAACCGCACCGGAAGTTCCAATCCTTATATGGCCCTGCATGTTAGGTTTGAGAAGGGGATGGTCAGGTTGAAGAGATACTTGGAGATGACGGGTGCTGATGGAGGACTGGCCTTGGAGAAGCTTATGTGCTTTGCTTGCATTTTGGGTAATAAGCTAAGCTACTGCAACCTTCTCTTTCCAGATCGCTTTGCTTGCATTTCAATCTGGGTGGAAGCTGTTGTTTTTGTCAAGGCTTTTGTTATTTCATTTATGATTGGTCAACAATTCATTTATGGCGTAGGAAAAGATCTTACTTACATTGGATATTTGTCGAATAGGCTAATATGTTCTCATCAGTTGAATGGCATATTAGATATGGCATGGAGGCCATCTACTTTGATGAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

268

Amino Acids

30.64

Weight (kDa)

9.22

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	58 - 161	2.7e-18	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	26, 28
AciI	CCGC	4 cut(s)	16, 28, 342, 421
AcsI	RAATTY	2 cut(s)	6, 365
AcuI	CTGAAG	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	173, 487, 618, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	6 cut(s)	154, 178, 538, 571, 576, 632
AluI	AGCT	6 cut(s)	154, 178, 538, 571, 576, 632
AoxI	GGCC	4 cut(s)	273, 447, 525, 782
ApeKI	GCWGC	2 cut(s)	18, 139
ApoI	RAATTY	2 cut(s)	6, 365
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	274, 448
AsuHPI	GGTGA	1 cut(s)	358
BbvCI	CCTCAGC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	30, 126
BccI	CCATC	4 cut(s)	382, 469, 509, 793
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	2 cut(s)	19, 140
BlpI	GCTNAGC	1 cut(s)	572
BlsI	GCNGC	2 cut(s)	20, 141
BmgT120I	GGNCC	2 cut(s)	274, 448
BmsI	GCATC	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	335
Bpu1102I	GCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	76, 528
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	417, 480
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	76, 528
BseXI	GCAGC	2 cut(s)	30, 126
Bsh1236I	CGCG	2 cut(s)	26, 28
BshFI	GGCC	4 cut(s)	275, 449, 527, 784
BsiSI	CCGG	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	4 cut(s)	275, 449, 527, 784
Bsp143I	GATC	2 cut(s)	598, 703
Bsp1720I	GCTNAGC	1 cut(s)	572
BspACI	CCGC	4 cut(s)	16, 28, 342, 421
BspANI	GGCC	4 cut(s)	275, 449, 527, 784
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	2 cut(s)	26, 28
BsrI	ACTGG	2 cut(s)	76, 528
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	2 cut(s)	598, 703
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	95, 106, 131
Bst6I	CTCTTC	1 cut(s)	482
BstC8I	GCNNGC	3 cut(s)	194, 553, 610
BstDEI	CTNAG	2 cut(s)	335, 572
BstF5I	GGATG	2 cut(s)	417, 480
BstFNI	CGCG	2 cut(s)	26, 28
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	601, 706
BstMBI	GATC	2 cut(s)	598, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	552, 609
BstNSI	RCATGY	2 cut(s)	215, 458
BstUI	CGCG	2 cut(s)	26, 28
BstV1I	GCAGC	2 cut(s)	30, 126
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	4 cut(s)	275, 449, 527, 784
BtsCI	GGATG	2 cut(s)	417, 480
Cac8I	GCNNGC	3 cut(s)	194, 553, 610
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	274, 448
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviAII	CATG	4 cut(s)	87, 212, 455, 777
DdeI	CTNAG	2 cut(s)	335, 572
DpnI	GATC	2 cut(s)	600, 705
DpnII	GATC	2 cut(s)	598, 703
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	4 cut(s)	90, 215, 458, 780
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FatI	CATG	4 cut(s)	86, 211, 454, 776
FauI	CCCGC	3 cut(s)	21, 23, 335
Fnu4HI	GCNGC	2 cut(s)	19, 140
FokI	GGATG	2 cut(s)	424, 487
Fsp4HI	GCNGC	2 cut(s)	19, 140
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	19, 140
HaeIII	GGCC	4 cut(s)	275, 449, 527, 784
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	90, 215, 458, 780
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	2 cut(s)	69, 677
HindII	GTYRAC	2 cut(s)	69, 677
HindIII	AAGCTT	2 cut(s)	176, 536
HinfI	GANTC	1 cut(s)	252
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	3 cut(s)	69, 349, 677
Hpy188III	TCNNGA	4 cut(s)	185, 320, 374, 596
Hpy8I	GTNNAC	3 cut(s)	69, 349, 677
HpyAV	CCTTC	3 cut(s)	463, 596, 793
HpyCH4III	ACNGT	3 cut(s)	95, 106, 131
HpyCH4V	TGCA	5 cut(s)	215, 454, 555, 582, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	552, 609
HpyF3I	CTNAG	2 cut(s)	335, 572
Hsp92II	CATG	4 cut(s)	90, 215, 458, 780
HspAI	GCGC	1 cut(s)	26
KspAI	GTTAAC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	598, 703
Lsp1109I	GCAGC	2 cut(s)	30, 126
LweI	GCATC	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	74, 89
MalI	GATC	2 cut(s)	600, 705
MboI	GATC	2 cut(s)	598, 703
MboII	GAAGA	4 cut(s)	274, 277, 362, 499
MflI	RGATCY	1 cut(s)	703
MluCI	AATT	4 cut(s)	6, 224, 365, 680
MnlI	CCTC	4 cut(s)	327, 330, 512, 774
MseI	TTAA	3 cut(s)	68, 291, 363
MspI	CCGG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	194
MvnI	CGCG	2 cut(s)	26, 28
MwoI	GCNNNNNNNGC	2 cut(s)	552, 609
NdeII	GATC	2 cut(s)	598, 703
NlaIII	CATG	4 cut(s)	90, 215, 458, 780
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	2 cut(s)	215, 458
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	20, 141
PspPI	GGNCC	2 cut(s)	274, 448
PsuI	RGATCY	1 cut(s)	703
SaqAI	TTAA	3 cut(s)	68, 291, 363
SatI	GCNGC	2 cut(s)	19, 140
Sau3AI	GATC	2 cut(s)	598, 703
Sau96I	GGNCC	2 cut(s)	274, 448
SfaNI	GCATC	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	6, 224, 365, 680
SsiI	CCGC	4 cut(s)	16, 28, 342, 421
SspI	AATATT	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	95, 106, 131
TaqI	TCGA	3 cut(s)	234, 250, 728
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	4 cut(s)	6, 224, 365, 680
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	3 cut(s)	68, 291, 363
Tru9I	TTAA	3 cut(s)	68, 291, 363
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	18, 139
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	5 cut(s)	17, 71, 75, 651, 673
XapI	RAATTY	2 cut(s)	6, 365
XceI	RCATGY	2 cut(s)	215, 458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.