Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001747.1

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Forward (+)

17556 .. 19081

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001747.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgttgggcatcagatgttgggcatcagatgttgaactctctggcagtatacctaacttcataggaaattggtcaaagcttacttccttgaggtttcaaggaaactcctttgaaggtcctataccatctgcactttccaatctgacttctctgacagagctgtatataactgacttatctactaccaatgggagctcttctcttgggtttattaaggatatgaagtctctatctgtcttagtgctaagaaataacaacatttctgattcaattccttccaacattggagaataccaaagtttatctcagctggacttgagcttcaacaatctaactggacaaataccagactcgctgtttaacttgagttctctttccatcctgtttcttggaaacaataagttgaatggtactctacctgaatctaaaagctcatctcttctcaatgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

150

Amino Acids

16.17

Weight (kDa)

4.69

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	49
AfaI	GTAC	1 cut(s)	412
AgsI	TTSAA	6 cut(s)	35, 98, 113, 270, 325, 406
AluBI	AGCT	6 cut(s)	79, 160, 195, 310, 321, 432
AluI	AGCT	6 cut(s)	79, 160, 195, 310, 321, 432
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	197
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
Bbv12I	GWGCWC	1 cut(s)	197
BccI	CCATC	2 cut(s)	133, 386
BcoDI	GTCTC	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmsI	GCATC	2 cut(s)	18, 32
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpuEI	CTTGAG	3 cut(s)	109, 337, 385
Bse1I	ACTGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	319
BspQI	GCTCTTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	340
BssNAI	GTATAC	1 cut(s)	50
Bst1107I	GTATAC	1 cut(s)	50
Bst6I	CTCTTC	2 cut(s)	202, 444
BstDEI	CTNAG	3 cut(s)	238, 245, 306
BstF5I	GGATG	1 cut(s)	378
BstMAI	GTCTC	1 cut(s)	231
BstZ17I	GTATAC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	411
CviJI	RGCY	6 cut(s)	79, 160, 195, 310, 321, 432
CviKI_1	RGCY	6 cut(s)	79, 160, 195, 310, 321, 432
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	238, 245, 306
Eam1104I	CTCTTC	2 cut(s)	202, 444
EarI	CTCTTC	2 cut(s)	202, 444
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	197
FaiI	YATR	6 cut(s)	50, 62, 122, 165, 167, 221
FblI	GTMKAC	1 cut(s)	49
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	3 cut(s)	266, 350, 422
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	5 cut(s)	14, 28, 144, 153, 265
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	107, 285
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	238, 245, 306
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	6 cut(s)	27, 296, 321, 360, 395, 432
LweI	GCATC	2 cut(s)	18, 32
MboII	GAAGA	2 cut(s)	189, 431
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	2 cut(s)	67, 270
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	1 cut(s)	84
MseI	TTAA	2 cut(s)	213, 360
MspA1I	CMGCKG	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	266, 422
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PpuMI	RGGWCCY	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	213, 360
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	197
SfaNI	GCATC	2 cut(s)	18, 32
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	3 cut(s)	88, 316, 364
SmoI	CTYRAG	3 cut(s)	88, 316, 364
Sse9I	AATT	2 cut(s)	67, 270
SstI	GAGCTC	1 cut(s)	197
TasI	AATT	2 cut(s)	67, 270
TfiI	GAWTC	2 cut(s)	266, 422
Tru1I	TTAA	2 cut(s)	213, 360
Tru9I	TTAA	2 cut(s)	213, 360
TspDTI	ATGAA	2 cut(s)	49, 236
VpaK11BI	GGWCC	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.