Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Forward (+)

21142100 .. 21188264

Gene Structure 46165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG112300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGGTTGCACATATCAATATTGGAAACTTTACTGGTTGAAGTTGTAATGTTACATGATCCACGTCTTCTGTCTCTCATGTCGCACCCCTATTATTTCCAACTTAACAACTTCAACTATGCGTATGTCAATGTTCCTCAAGAAATCAACAGGCTGAGGTGCGGGGTGAACTATCACGCTCTTAAATTTTTTCCCGAGATAGAGCAGATGGCTGATTTATTGGCATCAAGGATGAGAAACCGCACTGGAAGTTCCAATCCTTATATAGCCATGTCGAGTTTGGAGTGTGTTACTGTGGAAAAAAGATTGGAAATTGCAGGTTCTTATGTAGGGTTTGCCGCCAACAGGTTTATTTCTATGATAAAAACTATGACTGATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

127

Amino Acids

14.68

Weight (kDa)

7.82

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	34 - 91	1.5e-06	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AciI	CCGC	3 cut(s)	162, 241, 339
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	41, 115
AjiI	CACGTC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	65
BmsI	GCATC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	39, 250
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	39, 250
BsiHKCI	CYCGRG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	3 cut(s)	162, 241, 339
BspCNI	CTCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	39, 250
BssMI	GATC	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	308
CviAII	CATG	3 cut(s)	56, 79, 271
CviJI	RGCY	3 cut(s)	154, 212, 269
CviKI_1	RGCY	3 cut(s)	154, 212, 269
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	194
FaeI	CATG	3 cut(s)	59, 82, 274
FatI	CATG	3 cut(s)	55, 78, 270
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	59, 82, 274
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	140, 194
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	10, 317
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	59, 82, 274
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	5 cut(s)	20, 136, 231, 303, 331
LweI	GCATC	1 cut(s)	233
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	51, 289
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	59
MluCI	AATT	2 cut(s)	185, 312
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	2 cut(s)	147, 150
MseI	TTAA	2 cut(s)	105, 183
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	59, 82, 274
PkrI	GCNGC	1 cut(s)	340
SaqAI	TTAA	2 cut(s)	105, 183
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	58
SetI	ASST	5 cut(s)	8, 67, 161, 322, 350
SfaNI	GCATC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	185, 312
SsiI	CCGC	3 cut(s)	162, 241, 339
SspI	AATATT	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	185, 312
TauI	GCSGC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	105, 183
Tru9I	TTAA	2 cut(s)	105, 183
TscAI	CASTG	1 cut(s)	250
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.