Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003062

Physical Location & Seq

Genomic Coordinates Reverse (-)

5357918 .. 5361475

Gene Structure 3558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCCGAAGGCTCCTCCGATCCTCCTCTTGATCTGTATGTCAATGTTCCTCAAGAAATCAACAGGCTGAGGTGCGGGGTGAACTATCACGCTCTTAAATTTCTTCCCGAGATAGAGCAGATGGCTGATTTATTGGCATCAAGGATGAGAAACCGCACTGGAAGTTCCAATCCTTATATGTATGTACATTCTTACATTTTAGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

69

Amino Acids

7.84

Weight (kDa)

6.02

Isoelectric Point (pI)

66.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	14 - 63	4.6e-07	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003062)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07951
malus_domestica	MD12G1248200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318681 RchiOBHm_Chr1g0319091 RchiOBHm_Chr2g0125271 RchiOBHm_Chr4g0426301 RchiOBHm_Chr7g0187311
rosa_laevigata	RLG00000006896 RLG00000028895
rosa_multiflora	Rmu_sc0001747.1_g000005 Rmu_sc0001877.1_g000012 Rmu_sc0001904.1_g000006 Rmu_sc0002983.1_g000016 Rmu_sc0006382.1_g000008 Rmu_sc0007285.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011350 Rroxscaffold_1G00037350 Rroxscaffold_1G00045990 Rroxscaffold_1G00049060 Rroxscaffold_1G00070310 Rroxscaffold_3G00222330 Rroxscaffold_4G00307450 Rroxscaffold_5G00385990 Rroxscaffold_6G00407860 Rroxscaffold_6G00428470
rosa_rugosa	Rorug01G0107800 Rorug03G0135100 Rorug03G0135200
rosa_samantha	Rh2AG155600 Rh2AG341400 Rh2BG161900 Rh2BG322800 Rh3BG144800 Rh3BG291400 Rh3BG291500 Rh4CG112300 Rh5DG415000
rosa_wichuraiana	Rw6G014080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	75, 154
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	1 cut(s)	186
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	107
BbvCI	CCTCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	4, 15
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	107
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	19, 31
BspACI	CCGC	2 cut(s)	75, 154
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	19, 31
BstAUI	TGTACA	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	22, 34
BstMBI	GATC	2 cut(s)	19, 31
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	185
CviJI	RGCY	5 cut(s)	5, 12, 67, 125, 203
CviKI_1	RGCY	5 cut(s)	5, 12, 67, 125, 203
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	21, 33
DpnII	GATC	2 cut(s)	19, 31
EaeI	YGGCCR	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	107
FaiI	YATR	4 cut(s)	39, 177, 179, 183
FauI	CCCGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	3 cut(s)	29, 53, 107
Hpy8I	GTNNAC	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	19, 31
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	2 cut(s)	49, 144
LweI	GCATC	1 cut(s)	146
MalI	GATC	2 cut(s)	21, 33
MboI	GATC	2 cut(s)	19, 31
MboII	GAAGA	1 cut(s)	95
MluCI	AATT	1 cut(s)	98
MnlI	CCTC	5 cut(s)	25, 33, 36, 60, 63
MseI	TTAA	2 cut(s)	96, 208
NdeII	GATC	2 cut(s)	19, 31
NlaIV	GGNNCC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	96, 208
Sau3AI	GATC	2 cut(s)	19, 31
SetI	ASST	2 cut(s)	74, 205
SfaNI	GCATC	1 cut(s)	146
SgeI	CNNG	9 cut(s)	41, 65, 76, 88, 101, 119, 121, 153, 171
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	75, 154
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	96, 208
Tru9I	TTAA	2 cut(s)	96, 208
TscAI	CASTG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.